Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPP2R5A Gene 0 133.22 13.98 34.11 42.48 74.07 41.07 38.66 30.45 27.15 22.96 114.38 138.11 135.87 125.26 101.64 64.67 101.18 4.74 12.22 15.14 63.17 108.46 45.39 2 261461 Transcript 0 148.57 17.52 34.23 57.67 119.78 75.23 63.20 41.15 35.42 32.27 184.26 260.60 286.26 179.48 124.06 90.69 153.16 5.67 13.37 16.92 69.50 154.61 66.45 3 498123 Transcript 0 4.79 0.92 2.98 9.48 1.61 0.55 5.19 1.94 1.67 2.06 2.04 1.61 4.33 0.80 4.12 1.35 2.99 0.56 1.44 3.53 0.00 0.00 1.33 4 479259 Transcript 0 2.59 1.38 0.00 0.28 2.74 0.27 2.73 0.37 0.00 0.00 3.28 4.86 2.95 10.26 3.68 0.43 2.08 0.27 0.00 0.92 3.23 0.92 0.85 5 498129 Transcript 0 0.98 0.47 0.00 0.22 0.02 0.22 0.92 0.56 0.38 0.00 0.23 0.76 1.37 0.81 1.36 0.00 0.78 0.00 0.34 0.98 0.25 0.00 0.00 6 IG2_AR2 ActiveIntergenicRegion 0 0.00 0.53 0.00 0.53 1.41 5.78 0.70 2.03 0.00 0.45 7.62 1.87 7.11 11.08 9.54 7.03 7.21 0.00 2.51 2.80 6.37 0.55 2.32 7 ER1a ExonRegion 1 7.38 1.92 4.04 2.51 3.99 10.21 3.67 3.91 6.59 4.97 51.59 9.65 19.26 77.87 26.73 32.89 50.88 4.49 5.93 4.17 75.74 25.93 29.35 8 E1a_E6a KnownJunction 0 14.45 0.00 14.22 18.08 25.04 44.63 21.68 6.49 13.14 15.77 115.19 61.97 40.42 155.75 62.30 81.35 128.94 23.88 4.80 5.18 125.78 98.71 59.58 9 E1a_E7a NovelJunction 0 0.00 0.00 1.71 0.00 0.00 4.94 2.16 0.00 4.05 3.33 7.95 0.00 0.00 15.72 0.00 0.00 19.73 0.00 0.00 3.13 14.21 8.76 11.69 10 ER2a ExonRegion 0 1.88 0.45 1.26 4.11 5.35 1.22 7.05 0.57 0.41 0.38 0.00 3.95 8.75 0.60 1.82 1.98 0.00 0.00 0.71 0.94 0.49 0.46 0.00 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 0 4.74 4.14 0.00 0.84 4.83 0.82 5.94 1.11 0.00 0.00 2.88 9.03 8.86 13.65 11.04 1.28 2.77 0.80 0.00 2.76 4.26 2.77 2.54 15 E3_Da NovelBoundary 0 38.97 68.15 51.45 83.01 27.42 14.03 55.82 61.94 46.76 66.67 23.32 11.70 23.05 8.53 10.51 32.98 36.47 91.99 19.58 55.42 18.59 28.47 45.07 16 E3a_E6a KnownJunction 0 3.04 0.00 0.00 0.00 3.40 0.00 2.25 0.00 0.00 0.00 6.95 5.55 0.00 17.13 0.00 0.00 3.46 0.00 0.00 0.00 5.44 0.00 0.00 17 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.62 2.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER5a ExonRegion 0 9.58 1.84 5.96 18.97 3.23 1.11 10.39 3.89 3.33 4.13 4.08 3.23 8.66 1.60 8.24 2.69 5.98 1.12 2.88 7.06 0.00 0.00 2.66 20 E5_Da NovelBoundary 0 43.49 3.35 4.85 19.54 3.90 0.00 8.17 7.68 7.35 5.43 4.84 23.56 21.75 2.24 8.90 6.66 0.00 1.78 0.00 3.26 0.00 0.00 3.16 21 E6_Aa NovelBoundary 0 7.26 0.00 2.96 22.08 11.12 24.99 35.64 11.67 2.95 2.95 0.00 12.15 0.00 2.47 4.94 4.19 4.30 0.00 7.81 2.56 0.00 0.00 0.00 22 ER6a ExonRegion 1 42.18 8.85 16.07 36.92 49.07 45.95 46.80 21.56 31.30 22.99 204.87 154.32 221.50 210.77 78.30 106.39 178.75 7.70 15.46 17.13 118.59 124.57 68.14 23 E6_Da NovelBoundary 0 9.33 3.16 0.00 18.58 12.14 0.00 10.07 9.94 2.31 0.00 4.69 6.30 32.63 4.94 9.64 0.00 3.55 1.70 4.80 16.68 0.00 3.00 0.00 24 E6a_E7a KnownJunction 1 88.68 8.75 15.76 24.37 46.26 99.66 49.33 26.45 35.47 25.71 328.93 177.36 179.70 224.85 82.21 119.28 291.72 13.10 8.85 11.89 188.36 194.36 110.72 25 I6 Intron 0 6.62 3.39 2.60 14.33 7.16 3.19 16.29 3.22 1.22 2.02 2.62 11.65 12.44 2.63 5.57 1.76 4.02 0.99 4.65 9.39 0.69 0.94 1.33 26 I6_SR1 SilentIntronRegion 0 6.91 3.72 2.70 15.39 7.46 3.83 17.93 3.25 1.44 2.01 2.78 12.13 13.57 2.72 4.78 2.07 3.02 0.88 4.44 10.47 0.48 1.18 1.15 27 E7_Aa NovelBoundary 0 16.74 2.50 3.31 21.61 0.00 2.90 10.60 3.53 1.39 1.48 7.48 20.11 0.00 0.00 10.51 0.00 16.92 0.00 0.00 14.13 0.00 0.00 0.00 28 ER7a ExonRegion 1 70.97 14.63 20.63 37.69 53.20 42.70 39.10 26.08 40.98 24.85 207.94 223.39 301.45 236.39 89.51 126.99 218.22 8.48 24.02 17.88 158.45 147.13 77.73 29 E7_Da NovelBoundary 0 9.19 3.35 4.41 11.25 7.64 2.78 16.61 2.30 3.56 4.81 2.42 0.00 34.25 2.47 4.45 0.00 13.37 0.00 8.94 9.08 0.00 0.00 4.18 30 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E7a_E9a KnownJunction 0 48.60 13.16 20.22 57.47 78.18 44.92 31.84 36.68 67.74 31.80 161.67 300.10 361.18 217.61 104.70 157.39 241.61 4.06 20.71 32.09 146.47 158.72 62.49 32 E8_Aa NovelBoundary 0 7.19 6.18 5.50 13.82 0.00 2.56 23.23 2.55 0.00 0.00 5.21 12.30 19.32 3.00 11.87 4.27 4.68 1.99 4.80 8.37 0.00 3.06 4.35 33 ER8a ExonRegion 0 5.88 2.82 0.00 1.34 0.11 1.35 5.52 3.38 0.00 0.00 1.37 4.57 8.21 1.76 6.04 0.00 4.68 0.00 2.04 5.85 1.50 0.00 0.00 34 E8_Da NovelBoundary 0 3.78 3.35 5.32 27.14 7.81 4.43 25.08 5.22 1.74 1.50 2.68 6.30 19.97 2.24 8.90 7.69 0.00 2.11 4.80 5.62 4.94 0.00 4.35 35 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER9a ExonRegion 0 89.80 16.22 20.78 45.75 110.42 63.99 59.73 31.06 44.62 25.37 228.41 252.60 308.74 217.98 108.50 137.10 207.92 6.56 12.81 19.15 168.93 151.45 80.49 37 E9_Da NovelBoundary 0 24.89 0.00 5.14 19.11 11.04 0.00 11.61 4.68 0.00 2.71 4.69 0.00 21.91 2.24 4.45 0.00 0.00 0.00 9.04 0.00 6.05 2.63 0.00 38 E9a_E10a KnownJunction 1 114.54 27.30 25.75 46.05 57.72 63.71 51.32 24.89 39.76 28.18 219.53 164.30 252.42 189.83 34.86 112.53 221.32 4.10 17.13 14.06 135.54 130.49 69.14 39 I9_SR1 SilentIntronRegion 0 8.52 2.38 2.61 14.76 14.94 1.71 18.12 1.73 5.38 1.99 2.52 19.48 21.05 6.25 3.64 4.22 6.03 0.72 1.71 7.88 2.14 5.16 1.27 40 I9_AR1 ActiveIntronRegion 0 11.83 1.71 0.51 15.89 13.16 2.21 16.81 4.99 2.46 2.01 10.80 17.60 22.96 3.93 8.20 8.33 3.11 1.24 3.33 9.27 1.85 6.74 2.85 41 E10_Aa NovelBoundary 0 16.15 6.71 5.20 13.68 11.97 0.00 28.66 2.01 2.84 4.84 16.53 36.76 13.64 6.71 11.25 15.72 8.32 0.00 0.00 6.26 9.02 6.25 0.00 42 ER10a ExonRegion 0 84.71 21.16 30.74 51.32 66.40 66.65 56.62 33.14 43.09 29.47 200.38 208.62 251.87 238.57 104.55 132.35 178.57 4.08 11.40 26.35 118.27 163.85 81.03 43 E10_Da KnownBoundary 0 128.39 20.85 34.98 63.43 99.83 61.95 79.58 42.02 45.98 30.60 215.48 212.47 369.13 241.57 126.46 145.60 183.64 10.53 13.65 23.52 72.90 205.19 91.85 44 ER10b ExonRegion 0 110.52 16.55 25.51 63.16 131.17 56.04 74.78 37.06 42.19 34.04 213.89 232.49 388.24 190.87 116.69 130.60 206.77 8.94 8.79 17.74 68.05 195.98 81.58 45 E10_Db NovelBoundary 0 0.00 0.00 3.67 14.15 4.07 0.00 52.02 0.00 0.00 3.98 0.00 23.86 13.15 7.12 19.28 19.23 0.00 0.00 8.75 12.14 8.96 4.90 0.00 46 E10b_E11a KnownJunction 1 131.50 20.85 23.12 74.35 201.27 89.44 79.32 39.35 45.83 42.58 181.15 314.50 613.43 169.88 113.48 82.37 156.33 3.32 0.00 14.00 44.17 233.54 45.07 47 ER11a ExonRegion 1 88.19 15.05 18.28 52.68 181.82 85.58 78.40 36.24 38.47 34.79 183.11 322.98 508.40 170.67 104.06 99.47 152.83 8.84 16.46 20.11 38.05 167.79 61.23 48 E11a_E12a KnownJunction 0 101.80 21.71 15.32 40.35 175.13 104.71 81.83 32.04 26.39 27.35 176.47 313.60 254.85 175.29 89.75 106.30 171.86 9.58 7.44 11.95 23.23 144.76 56.08 49 I11 Intron 0 9.86 1.99 5.90 15.56 13.87 3.31 19.29 2.32 2.90 1.15 10.16 15.28 25.18 7.54 9.28 4.91 8.43 1.80 3.35 11.19 2.65 5.79 3.75 50 I11_SR1 SilentIntronRegion 0 9.90 1.99 5.92 15.62 13.93 3.32 19.38 2.33 2.92 1.16 10.21 15.35 25.30 7.57 9.32 4.93 8.47 1.80 3.36 11.23 2.66 5.81 3.77 51 E12_Aa NovelBoundary 0 34.90 0.00 3.08 18.51 20.46 16.58 10.38 6.94 0.00 7.20 4.69 6.30 19.97 7.77 0.00 0.00 13.84 1.58 0.00 24.10 5.50 5.57 0.00 52 ER12a ExonRegion 0 125.40 16.06 24.10 44.66 121.29 102.41 68.53 38.41 36.89 34.50 190.65 272.16 314.32 181.47 97.79 87.15 156.47 4.42 16.72 16.44 47.75 151.68 65.17 53 E12_Da NovelBoundary 0 12.67 0.00 0.00 17.98 16.72 2.38 35.82 6.08 0.00 4.75 7.48 0.00 57.14 7.30 0.00 0.00 4.39 0.00 9.13 21.03 0.00 11.39 3.67 54 E12a_E13a KnownJunction 0 193.66 18.75 25.37 47.55 119.69 90.12 84.48 39.92 33.48 29.36 215.84 167.00 235.54 206.72 103.59 62.55 177.56 3.98 17.51 15.21 45.53 220.38 86.99 55 I12_AR1 ActiveIntronRegion 0 5.55 2.18 1.11 12.07 7.59 2.10 14.27 2.56 2.29 3.88 4.07 19.92 27.92 5.24 9.11 3.97 4.66 0.34 2.39 8.32 0.65 5.12 1.82 56 E13_Aa NovelBoundary 0 0.00 0.00 2.93 3.40 3.14 0.00 27.34 0.00 3.10 2.98 4.42 18.76 39.12 2.47 0.00 0.00 21.41 0.00 0.00 5.05 2.41 9.25 15.71 57 ER13a ExonRegion 0 134.16 23.16 35.44 47.30 83.10 53.52 51.78 50.38 37.33 37.78 222.00 280.85 402.56 177.75 118.74 83.88 191.82 4.86 10.97 19.66 59.50 150.94 66.51 58 E13_Da NovelBoundary 0 7.56 0.00 3.37 17.18 0.00 5.45 21.24 9.69 5.24 0.00 0.00 11.40 28.24 4.94 0.00 7.69 8.04 0.00 0.00 2.88 3.15 0.00 7.17 59 E13a_E14a KnownJunction 1 180.55 36.90 36.46 45.05 53.99 65.53 38.82 47.69 34.78 35.19 219.63 390.88 552.07 190.65 164.66 98.52 149.79 4.68 9.60 20.71 86.49 123.08 70.94 60 I13 Intron 0 10.55 4.24 5.19 15.78 11.23 4.08 17.41 3.41 2.85 3.71 4.46 15.34 17.81 7.09 9.73 7.37 9.20 2.67 4.75 10.90 1.98 3.99 5.04 61 I13_AR1 ActiveIntronRegion 0 3.42 4.01 3.84 15.71 7.02 3.29 20.69 1.59 1.62 2.38 1.36 24.05 21.48 5.82 5.96 3.47 9.62 1.79 1.14 11.32 1.05 3.73 4.22 62 I13_SR1 SilentIntronRegion 0 9.54 1.91 5.29 15.31 10.30 2.79 18.27 2.49 2.08 4.79 2.26 18.02 21.92 7.82 5.68 6.17 5.50 1.62 3.41 10.17 0.79 3.92 1.84 63 I13_AR1 ActiveIntronRegion 0 12.14 2.86 9.78 23.65 14.28 5.26 16.05 2.88 7.27 4.76 6.19 6.64 23.42 9.51 8.62 1.87 6.84 1.38 0.00 15.76 3.01 2.01 3.28 64 E14_Aa NovelBoundary 0 21.11 5.92 8.13 34.63 34.89 0.00 52.64 6.00 1.62 1.58 2.32 18.01 48.05 4.47 4.45 11.54 0.00 0.00 4.80 17.45 9.45 5.51 4.18 65 ER14a ExonRegion 0 140.27 16.07 37.53 43.48 83.94 64.22 48.23 45.89 47.73 35.13 222.97 380.57 399.02 212.76 130.78 112.59 179.09 6.63 24.86 27.03 112.95 145.44 70.19 66 E14_Da NovelBoundary 0 25.12 17.63 10.91 45.15 22.75 4.43 30.25 7.93 3.53 11.60 4.37 18.01 40.58 6.71 19.28 8.29 7.95 1.53 0.00 26.78 0.00 0.00 4.27 67 E14a_E15a KnownJunction 0 106.32 6.05 46.33 52.01 149.07 44.92 57.15 31.13 48.03 33.90 212.63 291.70 235.05 244.28 155.26 79.89 199.91 2.16 17.41 22.12 89.82 176.05 48.74 68 I14 Intron 0 9.49 12.16 6.14 40.21 19.49 2.74 26.46 6.26 3.44 8.94 4.69 20.98 18.81 6.18 15.21 10.01 4.30 2.93 20.83 21.45 1.65 0.78 2.19 69 I14_SR1 SilentIntronRegion 0 9.53 12.43 6.33 41.42 19.78 2.71 27.14 6.38 3.50 9.15 4.81 21.78 19.38 6.35 15.72 10.35 4.47 2.96 21.24 21.96 1.71 0.81 2.20 70 E15_Aa NovelBoundary 0 7.19 15.06 19.78 48.48 17.06 10.05 45.53 18.28 4.80 9.75 7.74 26.26 0.00 9.48 27.44 8.46 13.28 2.45 0.00 14.89 0.00 0.00 4.35 71 ER15a ExonRegion 0 137.12 17.23 46.60 80.68 142.95 83.39 85.34 48.77 41.79 40.74 188.73 329.58 268.39 199.20 151.16 99.54 149.39 3.17 11.79 28.76 67.80 164.15 77.28 72 E15_Da NovelBoundary 0 40.67 30.46 9.17 45.32 56.96 11.87 47.30 15.85 6.68 4.11 2.05 24.91 12.99 4.59 8.90 3.85 0.00 0.00 0.00 12.46 0.00 2.57 4.35 73 E15a_E16a KnownJunction 0 221.37 12.83 58.07 62.40 129.12 129.70 81.39 59.89 40.65 39.89 193.42 331.76 252.26 165.70 168.98 126.80 143.71 0.00 13.27 2.49 68.39 140.41 111.65 74 I15 Intron 0 13.65 8.34 6.42 9.52 12.55 2.15 14.75 1.51 1.08 2.00 3.40 6.27 29.92 1.57 8.60 1.74 1.94 2.70 1.87 14.97 1.29 1.22 0.00 75 I15_SR1 SilentIntronRegion 0 14.35 8.83 6.78 10.04 13.31 2.28 15.56 1.60 1.13 2.13 3.61 6.65 31.74 1.60 9.13 1.74 2.05 2.82 1.98 15.88 1.37 1.30 0.00 76 E16_Aa NovelBoundary 0 19.56 3.16 7.84 42.98 11.12 2.90 25.75 9.00 2.69 1.56 17.79 38.71 7.30 2.47 4.45 0.00 0.00 0.00 7.53 40.72 0.00 0.00 0.00 77 ER16a ExonRegion 0 219.13 23.78 42.20 104.88 147.65 113.17 82.61 49.52 42.04 40.02 222.71 268.43 250.33 215.87 162.13 99.33 168.42 5.37 17.10 30.17 75.70 171.86 71.33 78 E16_Da NovelBoundary 0 19.93 9.54 23.06 30.93 34.97 0.00 31.62 5.91 3.59 5.83 7.69 40.81 28.08 2.24 18.79 7.60 4.39 2.57 4.42 15.98 0.00 3.12 3.50 79 E16a_E17a KnownJunction 0 254.71 24.54 34.98 80.98 151.10 85.41 52.47 55.37 34.14 31.35 198.16 301.30 209.24 132.44 156.99 88.87 143.81 0.00 7.53 19.11 77.35 177.03 69.83 80 E17_Aa NovelBoundary 0 2.82 6.58 7.07 20.14 20.37 2.27 24.07 6.08 3.10 1.45 4.90 43.96 14.12 5.00 15.20 6.75 0.00 0.00 0.00 9.14 2.66 0.00 12.46 81 ER17a ExonRegion 0 205.49 19.86 43.02 82.47 132.61 70.33 65.38 58.43 35.33 28.47 196.44 306.80 227.47 175.87 156.75 97.58 143.30 4.91 19.36 19.63 78.92 144.03 81.10 82 E17_Da NovelBoundary 0 22.97 9.14 25.69 32.53 19.27 2.27 23.49 0.00 8.65 5.88 11.79 45.61 27.27 10.36 4.45 4.27 9.54 2.07 0.00 14.13 5.07 20.57 3.76 83 E17a_E18a KnownJunction 0 157.95 16.25 46.07 82.24 117.23 83.30 90.75 46.95 25.90 29.92 170.15 198.66 141.71 223.38 93.33 77.24 125.20 2.57 26.07 5.05 78.64 131.65 57.79 84 I17 Intron 0 24.80 4.37 10.27 22.40 20.50 8.24 20.81 7.88 8.27 6.17 14.02 25.23 41.92 11.84 12.66 7.46 8.01 3.40 9.13 17.07 3.77 8.56 5.59 85 I17_AR1 ActiveIntronRegion 0 21.17 6.85 5.88 20.83 11.31 9.29 23.05 5.05 7.96 3.87 6.86 24.38 46.11 8.25 12.92 5.28 4.23 1.94 6.09 10.88 0.00 10.26 4.39 86 I17_SR1 SilentIntronRegion 0 25.57 4.06 10.97 23.09 22.24 8.25 20.74 8.35 8.44 6.56 15.21 25.61 42.15 12.50 12.82 7.77 8.70 3.64 9.58 18.31 4.32 8.43 5.85 87 E18_Aa NovelBoundary 0 31.41 7.89 5.97 19.94 31.75 0.00 39.13 16.80 10.85 4.22 14.74 37.81 27.11 2.30 10.01 4.36 3.65 2.07 4.80 12.21 0.00 5.51 15.37 88 ER18a ExonRegion 0 292.77 25.29 73.77 70.90 125.73 52.78 54.22 54.48 42.25 37.45 126.25 176.44 126.34 143.78 184.05 76.27 113.93 5.89 18.35 22.04 56.65 174.26 52.19 89 IG3 Intergenic 0 4.34 2.40 1.91 8.96 6.43 4.16 11.97 1.12 0.80 2.61 3.21 13.11 9.75 6.17 5.79 4.15 4.76 1.00 5.98 11.61 0.67 0.91 2.44 90 IG3_SR1 SilentIntergenicRegion 0 4.85 2.37 1.67 4.55 8.12 5.47 9.72 0.81 0.52 3.56 1.63 17.68 14.42 5.38 8.37 3.19 2.29 0.32 2.58 14.96 0.67 0.00 1.72