Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP5-1116C7.1 Gene 0 41.43 42.36 8.03 14.22 24.03 18.77 16.88 14.35 9.25 14.58 0.35 5.01 0.42 0.48 0.18 0.00 0.59 3.55 0.00 18.53 18.79 80.82 79.89 2 417354 Transcript 0 23.02 27.26 7.49 8.85 18.63 13.84 9.06 12.17 6.28 7.95 0.23 3.26 0.47 1.04 0.05 0.00 0.64 4.20 0.00 17.91 24.22 82.14 103.79 3 ER1a ExonRegion 0 3.06 3.12 2.86 2.21 0.00 11.86 3.83 1.86 2.44 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.32 0.00 5.37 9.64 7.54 30.80 4 E1_Da NovelBoundary 0 0.00 6.45 1.83 0.00 0.00 0.00 3.67 2.55 2.43 2.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 5.94 17.42 5.57 7.26 5 E1a_E2a KnownJunction 0 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 11.13 11.76 0.00 2.14 11.23 5.78 10.44 5.40 0.00 4.49 0.00 6.03 0.00 0.00 0.00 0.00 0.00 4.34 0.00 5.59 12.72 15.31 54.01 7 Ix_SR1 SilentIntronRegion 0 11.34 11.99 0.00 2.18 11.46 5.91 10.66 5.51 0.00 4.58 0.00 6.15 0.00 0.00 0.00 0.00 0.00 4.43 0.00 5.69 12.97 15.62 55.12 8 E2_Aa NovelBoundary 0 27.34 8.88 5.82 13.52 7.30 21.07 14.04 10.64 6.80 2.61 0.00 0.00 6.82 0.00 0.00 0.00 0.00 5.97 0.00 12.21 34.16 28.11 54.80 9 ER2a ExonRegion 0 12.15 20.22 9.43 6.05 6.19 1.81 9.87 13.16 1.54 5.73 0.05 0.00 3.28 0.98 0.00 0.00 2.31 0.25 0.00 32.32 61.73 59.97 63.88 10 E2_Da NovelBoundary 0 0.00 0.00 6.53 1.66 8.06 0.00 11.22 10.60 4.92 8.09 0.00 0.00 6.82 0.00 0.00 0.00 0.00 15.63 0.00 28.06 31.20 75.62 101.50 11 E2a_E3a KnownJunction 0 21.11 18.48 11.56 12.52 17.32 2.61 2.16 21.89 3.59 12.52 0.00 0.00 0.00 4.94 0.00 0.00 0.00 1.62 0.00 29.21 43.80 190.56 239.27 12 Ix Intron 0 8.02 21.10 2.78 5.49 9.54 5.95 10.68 6.02 6.47 7.44 0.43 1.79 2.72 0.34 0.10 0.22 0.32 2.67 0.31 10.36 6.61 40.88 39.36 13 Ix_SR2 SilentIntronRegion 0 0.00 7.08 0.00 3.06 11.40 5.53 7.72 7.13 6.15 2.08 1.17 0.00 2.72 0.00 0.00 0.00 0.00 3.78 0.00 11.63 9.44 22.22 70.86 14 Ix_AR1 ActiveIntronRegion 0 6.72 13.35 2.96 4.97 9.86 5.40 12.80 3.63 5.36 6.01 0.63 0.94 1.30 0.32 0.27 0.19 0.43 3.57 0.00 10.10 9.41 36.40 42.71 15 Ix_SR1 SilentIntronRegion 0 10.13 28.64 3.09 6.23 9.05 6.41 9.67 7.52 7.31 9.25 0.18 2.65 3.71 0.41 0.00 0.27 0.30 1.88 0.58 10.37 4.25 46.88 32.35 16 E3_Aa NovelBoundary 0 16.97 14.14 3.70 18.48 11.29 10.39 7.51 12.65 9.92 11.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 20.52 5.31 80.09 57.11 17 ER3a ExonRegion 0 29.36 49.20 9.11 10.55 32.90 21.30 9.93 17.75 11.27 8.31 1.21 8.66 0.00 0.83 0.00 0.00 2.16 7.18 0.00 22.34 31.13 156.13 296.64 18 E3_Da NovelBoundary 0 24.00 18.75 4.61 5.23 4.24 6.98 14.40 6.90 2.66 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.32 0.00 16.43 3.15 47.03 31.84 19 E3a_E4a KnownJunction 0 23.26 33.48 7.89 7.03 35.48 33.22 10.25 10.43 9.29 2.93 0.00 6.30 0.00 0.00 0.00 0.00 0.00 12.56 0.00 15.60 14.58 58.29 47.97 20 Ix Intron 0 12.14 20.42 3.53 7.38 9.82 5.93 12.98 6.79 8.78 11.00 0.00 1.88 2.10 0.42 0.47 0.20 0.11 2.30 0.21 14.90 7.13 54.90 43.88 21 Ix_SR3 SilentIntronRegion 0 11.02 23.51 2.67 8.53 9.73 5.46 12.38 9.51 10.05 9.64 0.00 1.38 0.00 0.00 0.00 0.00 1.28 2.49 0.00 11.83 3.12 65.99 37.26 22 Ix_AR2 ActiveIntronRegion 0 16.01 25.98 4.63 6.80 10.75 6.88 13.23 4.35 10.98 13.96 0.00 2.07 1.35 0.00 1.25 0.35 0.00 4.91 0.00 20.82 14.90 83.83 76.15 23 Ix_SR2 SilentIntronRegion 0 7.14 20.60 0.72 5.14 3.94 1.34 8.42 7.63 7.00 8.50 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 15.68 6.64 32.98 39.27 24 Ix_AR1 ActiveIntronRegion 0 13.11 18.55 2.16 8.01 8.83 4.49 14.74 7.39 8.92 9.99 0.00 2.48 4.38 0.43 0.23 0.33 0.00 0.30 0.00 15.57 4.08 44.87 38.80 25 Ix_SR1 SilentIntronRegion 0 8.41 15.85 4.58 7.37 10.93 7.39 11.87 7.70 6.34 9.94 0.00 1.53 1.46 1.03 0.00 0.00 0.00 2.07 0.75 9.09 3.77 36.48 19.46 26 E4_Aa NovelBoundary 0 17.41 13.35 6.24 7.39 30.05 10.11 32.28 14.01 11.98 17.30 0.00 6.75 0.00 0.00 0.00 0.00 0.00 1.87 0.00 8.76 0.00 31.60 31.24 27 ER4a ExonRegion 0 72.18 66.33 10.00 23.56 38.51 26.07 27.37 20.08 14.21 26.12 0.36 7.86 0.00 0.49 0.38 0.00 0.00 2.49 0.00 20.52 8.62 102.49 47.95