Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP1-102G20.3 Gene 0 7.33 4.49 3.45 4.05 3.09 2.31 3.20 5.28 3.09 2.69 0.92 13.10 7.35 1.54 4.05 14.82 4.68 2.61 0.67 7.38 0.93 0.65 0.46 2 452442 Transcript 0 4.13 1.28 0.86 1.12 1.23 0.71 1.40 0.83 1.11 1.07 0.00 5.00 2.88 0.63 1.62 4.26 2.45 0.53 0.13 3.70 0.36 0.09 0.12 3 448686 Transcript 0 7.62 8.88 3.82 5.55 4.39 3.73 5.53 12.88 5.08 4.52 2.15 19.48 10.49 2.35 4.79 21.87 4.34 4.21 1.08 8.67 1.02 1.61 0.82 4 ER1a ExonRegion 0 6.03 1.98 0.89 0.00 5.20 4.45 3.23 0.00 1.79 0.00 0.00 8.41 0.00 1.21 0.99 11.32 7.95 1.30 0.00 4.13 2.14 0.00 0.00 5 E1_Da NovelBoundary 0 2.82 3.03 1.21 0.00 22.07 0.00 2.21 10.47 4.60 1.37 2.68 17.11 19.15 7.42 6.30 11.54 4.30 2.57 0.00 5.75 0.00 3.12 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 Ix Intron 0 11.49 4.64 3.82 7.03 6.82 1.90 4.29 5.67 5.97 2.99 0.70 19.94 9.29 3.14 4.47 21.23 8.52 1.95 1.40 10.45 1.39 0.98 1.48 8 Ix_AR2 ActiveIntronRegion 0 16.14 2.99 7.79 11.14 6.51 0.82 4.47 3.62 6.09 3.31 0.00 25.02 6.14 2.79 5.92 15.18 8.65 1.63 1.71 7.58 0.65 1.54 3.48 9 Ix_AR1 ActiveIntronRegion 0 21.17 10.46 7.35 6.04 5.35 0.00 2.65 3.46 4.76 2.29 0.00 16.70 16.08 1.62 0.00 8.49 3.30 0.00 0.00 9.12 0.00 0.00 2.94 10 Ix_SR1 SilentIntronRegion 0 11.70 5.45 3.14 6.92 7.12 2.22 4.35 6.49 6.42 3.28 0.83 20.52 10.13 3.18 4.36 23.48 9.21 2.19 1.30 11.54 1.49 0.94 1.12 11 E2_Aa NovelBoundary 0 138.02 16.51 10.56 16.48 21.22 19.70 11.97 12.57 8.94 6.80 2.68 11.10 0.00 11.48 16.69 42.64 18.61 7.05 0.00 15.21 3.03 0.00 3.33 12 ER2a ExonRegion 0 7.78 2.02 7.86 3.99 2.66 3.04 1.75 2.55 1.83 0.54 1.28 6.41 3.84 0.44 4.07 13.93 3.32 3.37 1.05 4.23 0.80 0.00 0.00 13 E2_Da NovelBoundary 0 16.23 3.09 1.80 20.64 7.81 0.00 6.23 9.98 13.54 5.21 4.74 18.31 0.00 11.54 25.47 85.53 13.18 5.64 8.38 13.49 0.00 0.00 0.00 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Aa NovelBoundary 0 3.19 13.02 1.83 8.89 7.89 5.79 12.45 7.19 8.07 5.10 4.95 0.00 20.29 4.36 4.45 27.09 17.77 0.00 4.42 0.00 0.00 0.00 0.00 16 ER3a ExonRegion 0 1.16 3.32 0.78 5.74 2.56 0.00 0.34 2.82 0.96 2.99 0.65 21.16 8.32 0.89 7.40 24.57 7.86 3.28 0.00 6.26 1.83 0.62 0.74 17 E3_Da KnownBoundary 0 3.19 6.71 1.83 12.59 6.79 0.00 2.16 4.15 1.50 7.49 2.68 30.31 0.00 4.77 9.64 24.95 12.72 4.56 0.00 8.95 2.72 3.12 4.18 18 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3b ExonRegion 0 7.62 8.88 3.82 5.55 4.39 3.73 5.53 12.88 5.08 4.52 2.15 19.48 10.49 2.35 4.79 21.87 4.34 4.21 1.08 8.67 1.02 1.61 0.82 20 E3_Db NovelBoundary 0 33.56 5.53 5.23 6.29 18.17 0.00 6.05 14.91 8.88 6.12 4.84 42.76 6.82 0.00 0.00 3.25 8.70 2.36 4.80 31.83 0.00 2.51 0.00 21 Ix Intron 0 13.48 7.69 7.21 11.11 9.03 5.74 7.17 8.59 8.49 4.19 1.31 21.22 15.10 2.78 7.67 32.08 8.99 4.19 1.82 14.45 1.20 1.45 1.60 22 Ix_AR2 ActiveIntronRegion 0 16.33 24.42 4.49 11.74 20.08 12.32 10.06 10.41 4.78 3.98 0.00 41.70 19.70 3.01 3.39 6.51 7.16 0.14 0.00 9.14 1.18 1.69 0.00 23 Ix_SR1 SilentIntronRegion 0 13.59 7.05 7.32 11.20 8.73 5.33 7.01 8.59 8.71 4.26 1.36 20.75 14.76 2.79 7.89 32.76 8.83 4.38 1.93 14.70 1.24 1.41 1.69 24 Ix_AR1 ActiveIntronRegion 0 8.29 13.54 6.07 8.28 9.16 12.78 9.84 7.35 5.14 2.28 1.00 19.16 21.93 2.26 4.96 32.74 15.32 1.89 0.00 11.40 0.00 2.38 0.22 25 E4_Aa NovelBoundary 0 31.04 27.43 5.35 21.08 11.38 11.13 0.00 7.48 9.43 2.93 0.00 6.00 13.31 7.06 10.75 29.65 7.76 0.00 0.00 9.52 0.00 0.00 0.00 26 ER4a ExonRegion 0 15.22 3.91 1.16 0.00 0.00 0.00 4.33 3.41 0.00 2.21 0.00 9.49 7.64 0.06 8.03 7.74 4.15 0.00 0.00 8.13 0.00 0.00 0.00 27 E4_Da NovelBoundary 0 48.08 11.97 7.81 8.42 16.64 7.84 12.67 8.91 9.98 4.51 0.00 18.61 33.76 0.00 18.54 22.56 13.56 0.00 0.00 9.46 0.00 2.69 0.00 28 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 Ix_AR3 ActiveIntronRegion 0 20.65 6.85 6.58 13.21 10.57 1.07 6.61 16.16 13.68 6.55 0.90 17.46 13.97 2.55 12.93 37.97 12.66 2.35 1.84 11.12 0.00 0.97 1.36 30 E5_Aa NovelBoundary 0 3.33 0.00 8.72 7.52 3.14 5.79 4.50 6.57 3.18 6.85 2.00 12.00 16.56 5.12 4.45 0.00 0.00 2.28 4.80 9.01 0.00 0.00 0.00 31 ER5a ExonRegion 0 2.00 0.96 0.02 2.95 3.79 0.00 1.85 2.38 3.44 4.08 0.00 14.47 3.60 1.22 0.00 4.18 3.12 1.75 0.00 6.07 0.00 0.00 0.00 32 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 Ix Intron 1 5.80 4.18 3.75 9.73 9.16 2.51 4.76 4.85 5.98 3.22 0.00 12.86 18.93 2.06 5.55 8.14 5.08 0.47 0.55 7.65 0.00 0.36 0.00 34 Ix_SR1 SilentIntronRegion 0 5.83 4.20 3.78 9.80 9.22 2.53 4.79 4.88 6.03 3.23 0.00 12.94 19.06 2.07 5.59 8.19 5.12 0.47 0.55 7.70 0.00 0.36 0.00 35 E6_Aa NovelBoundary 0 0.00 2.83 6.65 15.65 7.13 0.00 4.50 15.12 7.06 1.67 0.00 24.01 0.00 0.00 0.00 11.79 12.72 0.00 0.00 3.00 0.00 0.00 0.00 36 ER6a ExonRegion 0 9.81 3.37 4.84 6.00 0.89 1.21 1.77 0.85 3.68 2.25 0.00 7.65 11.79 2.53 3.96 10.85 4.37 1.22 1.05 11.27 0.73 0.69 0.97