Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TSEN15 Gene 0 83.51 94.76 62.52 97.81 95.91 51.15 59.32 65.44 44.19 73.93 216.73 266.78 303.23 164.35 162.82 97.66 122.59 41.00 40.37 91.10 29.43 81.08 34.82 2 423085 Transcript 1 13.26 53.08 18.42 26.80 7.05 23.79 20.09 29.66 18.81 49.32 49.07 37.06 62.33 63.39 33.99 12.82 38.15 24.66 44.33 43.14 11.61 21.37 0.00 3 361641 Transcript 1 17.93 51.50 26.61 35.16 45.08 20.78 56.75 46.21 26.30 49.37 197.16 147.80 88.63 226.38 135.24 92.03 121.65 39.30 27.39 60.21 69.38 81.50 16.05 4 485209 Transcript 0 0.00 0.01 0.00 0.00 0.01 0.05 1.13 0.01 0.03 0.01 0.45 5.84 13.86 0.53 0.02 0.01 0.04 0.00 0.08 1.80 0.00 0.02 0.62 5 367518 Transcript 1 2.65 3.91 2.19 6.93 5.72 1.17 7.17 3.13 2.70 4.10 18.77 56.23 45.43 8.08 6.96 4.35 10.69 3.79 4.06 11.70 0.00 1.80 0.00 6 457455 Transcript 0 0.00 1.51 1.43 1.01 1.32 0.77 3.61 1.28 0.02 0.03 5.40 8.34 11.75 9.22 4.59 6.39 6.12 2.99 4.35 10.76 1.10 0.52 5.20 7 462677 Transcript 0 0.00 0.00 1.83 4.00 0.00 0.00 2.25 2.18 1.79 0.00 2.16 6.30 0.00 0.00 4.45 0.00 0.00 0.00 3.95 0.00 0.00 2.57 0.00 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.87 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 6.86 3.77 0.43 0.13 5.40 1.46 1.79 0.19 0.05 0.62 7.30 0.00 0.00 16.75 18.43 6.05 1.65 1.92 2.36 2.84 1.47 0.19 4.46 10 E1_Ac KnownBoundary 0 26.38 22.56 2.51 1.70 13.92 7.15 3.80 0.00 1.16 2.28 23.06 0.00 0.00 39.85 63.91 14.95 12.06 15.59 12.14 11.06 2.72 0.00 10.07 11 ER1c ExonRegion 1 23.31 24.83 16.93 13.57 20.72 51.85 24.96 12.30 15.28 27.50 98.91 7.28 20.70 86.21 90.66 70.99 85.68 19.21 29.38 50.78 31.82 17.33 24.78 12 E1a_E2a KnownJunction 1 3.56 26.31 35.72 28.83 8.23 22.54 2.25 23.66 20.69 50.63 291.18 31.21 75.64 145.98 108.29 60.58 181.58 30.26 23.25 82.84 80.50 26.70 31.33 13 E2_Ab NovelBoundary 1 2.67 15.52 4.64 6.66 3.06 2.27 4.50 8.09 4.51 11.71 166.15 10.80 24.84 69.63 26.58 26.92 95.09 8.29 6.59 39.69 26.93 7.29 21.26 14 ER2a ExonRegion 1 2.12 18.30 36.45 24.53 5.35 19.71 5.13 25.06 22.54 49.46 307.33 35.72 74.45 153.07 108.43 70.96 183.61 39.26 31.46 85.90 71.35 27.61 24.59 15 ER2b ExonRegion 1 8.79 18.92 52.47 31.31 18.65 18.50 13.20 33.63 30.84 80.94 407.31 92.10 90.11 256.71 190.52 127.98 256.47 75.93 91.12 136.23 79.53 56.89 47.08 16 E2_Ac KnownBoundary 0 20.74 12.70 73.80 40.99 50.08 19.14 24.73 38.61 32.75 98.88 381.10 140.60 137.65 356.53 308.43 193.11 273.21 94.51 159.44 153.02 75.68 86.95 60.95 17 ER2c ExonRegion 1 37.89 27.73 68.71 58.90 39.81 21.11 16.79 52.19 47.36 104.51 337.31 96.62 111.42 337.70 368.88 256.47 180.66 168.33 121.98 157.76 70.46 76.94 85.59 18 E2a_E3a KnownJunction 1 63.79 58.61 85.12 89.13 63.41 23.51 14.04 69.54 52.66 110.21 321.98 112.39 170.61 314.91 429.57 285.82 127.72 219.21 86.21 162.80 78.83 65.64 92.45 19 ER3a ExonRegion 0 29.21 57.72 64.57 73.77 59.06 62.46 38.35 61.12 51.54 87.10 336.37 162.90 162.67 272.71 195.49 156.21 222.06 123.85 74.46 127.02 85.56 76.97 55.13 20 E3_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 1.22 0.00 7.95 12.15 13.64 17.72 0.00 3.67 8.04 0.00 4.80 12.59 0.00 0.00 0.00 21 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E3a_E5a KnownJunction 0 0.00 0.00 1.48 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 0.00 4.36 0.00 0.00 4.80 2.68 0.00 0.00 0.00 23 E3a_E6a KnownJunction 0 17.93 51.50 26.61 35.16 45.08 20.78 56.75 46.21 26.30 49.37 197.16 147.80 88.63 226.38 135.24 92.03 121.65 39.30 27.39 60.21 69.38 81.50 16.05 24 E3a_E7a KnownJunction 0 13.26 53.08 18.42 26.80 7.05 23.79 20.09 29.66 18.81 49.32 49.07 37.06 62.33 63.39 33.99 12.82 38.15 24.66 44.33 43.14 11.61 21.37 0.00 25 ER3b ExonRegion 0 0.00 1.51 1.43 1.01 1.32 0.77 3.61 1.28 0.02 0.03 5.40 8.34 11.75 9.22 4.59 6.39 6.12 2.99 4.35 10.76 1.10 0.52 5.20 26 ER4a ExonRegion 0 0.00 0.03 0.00 0.00 0.03 0.14 3.39 0.04 0.08 0.04 1.35 17.53 41.57 1.58 0.07 0.04 0.12 0.00 0.24 5.40 0.00 0.05 1.87 27 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 I4_SR2 SilentIntronRegion 0 3.58 5.58 1.32 8.50 12.69 7.27 10.46 8.35 9.66 6.91 19.27 50.45 74.44 15.91 2.57 12.99 12.17 4.01 3.19 20.83 2.79 8.34 7.77 29 ER5a ExonRegion 0 4.63 1.76 1.45 5.91 15.85 10.42 13.85 5.39 5.72 6.12 23.24 57.76 30.55 14.76 1.22 6.91 14.16 3.81 3.97 14.97 0.96 1.69 6.38 30 E5_Da KnownBoundary 0 7.56 6.18 3.90 13.72 19.35 0.00 2.25 4.07 8.22 8.41 33.43 65.72 28.08 9.01 0.00 3.76 17.11 4.23 0.00 33.43 0.00 3.12 0.00 31 E5a_E6a KnownJunction 0 0.00 0.00 1.83 4.00 0.00 0.00 2.25 2.18 1.79 0.00 2.16 6.30 0.00 0.00 4.45 0.00 0.00 0.00 3.95 0.00 0.00 2.57 0.00 32 ER5b ExonRegion 1 2.65 3.91 2.19 6.93 5.72 1.17 7.17 3.13 2.70 4.10 18.77 56.23 45.43 8.08 6.96 4.35 10.69 3.79 4.06 11.70 0.00 1.80 0.00 33 E6_Aa NovelBoundary 0 21.63 25.26 8.37 31.86 30.14 10.68 23.76 23.58 1.36 4.32 23.01 12.60 46.75 24.25 4.45 8.37 21.32 6.76 0.00 9.27 5.75 13.90 15.37 34 ER6a ExonRegion 0 45.40 44.60 35.01 53.01 37.16 22.90 33.41 51.93 34.91 60.97 291.83 214.34 183.54 222.50 177.53 116.48 177.11 46.08 36.52 77.85 54.70 87.48 31.43 35 E6_Da NovelBoundary 0 18.67 56.17 6.27 22.87 7.81 4.49 14.79 15.40 11.11 18.00 15.69 48.62 40.58 25.66 11.37 41.27 11.87 15.63 8.56 9.78 11.06 0.00 4.27 36 E6a_E7a KnownJunction 0 48.53 62.23 35.13 52.37 19.95 33.84 27.87 64.98 27.14 51.98 293.86 230.18 239.27 239.45 176.77 71.09 148.39 20.77 22.40 77.15 43.31 83.58 27.49 37 I6 Intron 0 19.12 36.54 7.70 21.00 20.42 16.02 20.60 14.74 8.87 9.44 13.58 29.85 24.73 10.65 14.46 6.56 6.63 4.99 5.44 13.24 0.22 5.43 3.24 38 I6_AR1 ActiveIntronRegion 0 13.51 30.90 9.39 13.99 22.81 19.25 24.91 11.41 5.39 10.06 19.90 18.72 24.83 13.98 10.73 10.39 12.56 5.06 7.93 18.72 0.85 5.75 6.98 39 I6_SR1 SilentIntronRegion 0 21.34 38.96 7.18 23.73 19.78 15.03 19.28 16.09 10.22 9.32 11.47 34.16 24.97 9.55 15.95 5.26 4.57 5.02 4.60 11.42 0.00 5.37 1.94 40 E7_Aa NovelBoundary 0 48.53 43.61 9.61 23.51 35.74 5.34 30.83 6.24 17.13 9.35 9.16 69.92 42.69 7.06 9.64 4.36 4.68 4.56 0.00 22.56 0.00 11.39 0.00 41 ER7a ExonRegion 0 109.95 170.73 87.90 136.37 126.11 87.63 84.47 94.55 75.10 119.55 413.24 447.93 427.43 293.89 250.36 165.17 229.50 73.00 68.61 150.72 41.08 163.11 57.19 42 E7_Da KnownBoundary 0 146.54 234.89 131.37 166.68 178.61 66.55 114.56 139.41 89.55 171.06 384.89 477.46 583.24 458.77 324.50 279.67 248.34 89.71 108.14 169.96 34.97 275.67 68.29 43 ER7b ExonRegion 0 134.35 220.53 116.39 171.66 146.98 74.75 108.87 120.34 89.23 143.26 484.81 487.88 542.26 369.61 286.00 273.55 304.89 105.13 92.22 156.84 66.60 173.46 85.15 44 E7_Db KnownBoundary 0 106.24 159.12 111.47 182.43 120.97 49.91 129.49 82.97 70.05 120.07 234.22 305.95 473.18 260.58 255.89 119.37 168.96 67.44 51.67 159.15 69.31 89.95 54.03 45 ER7c ExonRegion 0 138.71 135.56 91.04 153.87 158.70 71.14 88.90 95.91 58.21 97.09 222.93 396.90 478.54 165.55 204.37 88.20 109.26 29.21 38.26 110.90 20.61 103.49 34.71 46 IG3_AR3 ActiveIntergenicRegion 0 2.12 0.00 0.00 0.00 2.68 0.00 2.65 0.00 0.00 2.29 1.93 16.02 0.00 1.30 0.00 0.00 0.00 0.00 0.00 2.13 0.00 2.08 0.00