Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZBTB37 Gene 0 5.27 7.64 3.15 10.34 12.65 14.61 14.86 7.74 13.28 9.74 14.71 24.44 21.81 24.96 5.72 15.50 18.25 25.41 13.91 61.30 14.91 8.58 11.63 2 367704 Transcript 0 3.52 1.03 0.36 0.50 0.78 0.18 1.27 0.25 0.72 0.72 1.22 0.35 0.00 2.94 0.83 0.29 0.32 1.89 1.57 4.19 1.64 0.20 0.29 3 490000 Transcript 0 2.79 6.10 1.96 9.26 13.82 14.02 10.49 5.78 8.71 7.75 4.24 12.98 12.29 6.29 1.13 3.19 2.42 3.52 3.11 17.89 1.13 5.03 3.01 4 432989 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 427304 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 367702 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 327714 Transcript 0 5.64 1.36 0.00 0.00 1.78 4.28 4.41 1.15 2.88 0.76 3.22 0.00 0.00 8.12 0.00 11.89 8.80 11.70 12.74 14.18 2.94 2.08 9.79 8 367701 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 367703 Transcript 0 7.41 12.17 3.05 4.00 8.49 27.88 12.63 2.55 18.43 12.60 12.79 7.50 0.00 8.18 0.00 8.20 25.71 43.53 4.71 95.11 22.86 3.06 24.41 10 ER1a ExonRegion 0 10.55 0.00 1.07 0.00 2.35 0.54 1.55 0.75 0.55 0.50 1.70 1.05 0.00 1.57 2.50 0.87 0.97 1.61 0.00 0.62 1.96 0.61 0.86 11 E1_Da NovelBoundary 0 14.37 0.00 0.00 0.00 3.90 0.00 2.12 5.09 0.00 2.44 4.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 1.85 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 1.69 0.00 0.00 1.42 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 14 ER2b ExonRegion 0 5.48 1.36 0.00 0.00 0.62 1.46 4.75 0.44 2.00 0.97 2.58 0.00 0.00 5.46 0.00 11.74 6.86 15.11 9.56 9.27 1.92 0.91 7.53 15 E2a_E3b KnownJunction 0 20.97 2.96 0.00 0.00 7.72 18.46 21.90 3.86 6.54 2.95 11.69 0.00 0.00 29.43 0.00 35.12 32.16 33.29 42.73 39.56 8.09 8.76 27.23 16 E2a_E4a NovelJunction 0 5.63 6.38 0.00 0.00 8.49 5.79 22.04 0.00 0.00 0.00 4.63 0.00 0.00 0.00 0.00 4.27 0.00 5.97 0.00 22.18 5.56 2.82 3.84 17 ER2c ExonRegion 0 15.39 2.96 0.00 0.00 5.35 12.84 13.72 3.46 5.39 2.29 10.37 0.00 0.00 22.89 0.00 30.80 24.61 28.56 29.54 32.50 8.81 6.25 20.56 18 ER3a ExonRegion 0 5.64 1.36 0.00 0.00 1.78 4.28 4.41 1.15 2.88 0.76 3.22 0.00 0.00 8.12 0.00 11.89 8.80 11.70 12.74 14.18 2.94 2.08 9.79 19 E3_Ac KnownBoundary 0 19.63 6.18 1.83 1.93 12.99 2.10 7.07 4.93 16.78 5.78 9.00 0.00 0.00 7.06 0.00 35.46 15.05 34.82 21.37 62.57 13.84 5.82 11.44 20 ER3b ExonRegion 0 17.68 2.89 0.00 1.23 12.95 13.31 10.85 3.46 12.43 4.44 9.66 0.00 0.00 20.54 0.56 36.05 21.30 34.09 32.16 51.27 11.09 8.87 18.09 21 ER3c ExonRegion 0 3.27 1.44 0.49 2.82 1.31 2.46 4.29 3.83 13.35 3.36 9.62 13.86 8.87 15.20 3.18 19.45 15.92 18.18 17.91 40.54 8.05 4.95 8.67 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 1.70 3.31 0.00 2.25 2.34 12.88 0.00 10.90 0.00 28.08 9.65 0.00 12.73 0.00 17.04 38.12 31.38 9.08 2.45 0.00 23 E3a_E4b KnownJunction 0 2.74 0.00 1.36 1.27 0.00 0.00 10.60 9.16 7.90 4.30 14.69 18.16 0.00 19.19 0.00 53.23 17.48 32.33 22.87 50.30 2.59 13.72 34.23 24 ER4a ExonRegion 0 0.53 0.00 0.61 1.70 2.68 0.46 2.98 3.89 13.90 0.86 16.91 5.41 21.11 12.59 0.00 18.58 3.30 24.48 39.82 37.77 10.47 7.29 6.61 25 ER4b ExonRegion 0 4.70 5.96 2.48 4.60 6.03 7.35 13.88 10.12 12.66 7.14 19.57 28.97 24.68 25.27 6.31 21.94 13.82 39.45 20.24 69.00 23.25 10.96 15.61 26 E4_Ac KnownBoundary 0 0.00 5.53 4.85 15.28 7.47 2.33 13.78 4.64 8.68 4.92 14.64 37.96 34.58 21.60 0.00 20.85 11.97 52.40 16.47 74.78 38.49 16.90 19.63 27 ER4c ExonRegion 0 0.77 8.23 4.05 9.71 4.32 8.64 13.42 6.51 15.50 9.21 19.18 29.72 30.40 36.54 7.67 27.44 22.98 47.74 15.59 87.25 20.94 8.17 22.08 28 E4_Da KnownBoundary 0 0.00 9.08 1.18 3.40 3.48 4.77 0.00 0.00 10.24 5.37 2.37 0.00 0.00 7.89 0.00 10.60 4.30 18.99 3.58 41.67 13.78 3.12 11.87 29 E4a_E4d KnownJunction 0 7.41 12.17 3.05 4.00 8.49 27.88 12.63 2.55 18.43 12.60 12.79 7.50 0.00 8.18 0.00 8.20 25.71 43.53 4.71 95.11 22.86 3.06 24.41 30 E4_Ad KnownBoundary 1 7.56 0.00 4.61 0.00 0.00 13.63 12.59 0.00 6.13 1.67 4.53 11.85 6.49 4.65 0.00 0.00 24.59 19.81 0.00 34.90 2.72 0.00 3.41 31 ER4d ExonRegion 0 4.23 8.13 3.68 5.45 8.03 29.34 15.23 1.73 18.53 10.32 15.46 17.32 23.45 38.98 0.00 20.80 34.66 53.58 12.74 87.23 19.83 2.08 20.56 32 ER4e ExonRegion 0 3.60 6.79 3.11 7.97 7.35 11.32 11.97 8.65 12.64 10.36 18.14 23.55 14.75 38.19 5.83 19.65 30.81 39.23 17.44 72.34 24.44 7.11 17.37 33 E4b_E5a KnownJunction 0 2.82 5.66 4.38 7.69 0.00 13.40 17.93 4.93 9.46 8.89 28.95 24.76 19.97 34.43 24.97 23.24 18.42 36.93 7.53 68.77 37.19 2.57 17.93 34 E4b_E6a KnownJunction 0 0.00 3.09 0.00 1.50 0.00 0.00 2.25 0.00 1.62 1.67 1.95 0.00 0.00 7.24 0.00 0.00 0.00 4.06 4.71 11.95 2.97 0.00 0.00 35 ER5a ExonRegion 0 2.41 4.07 5.48 7.18 5.19 6.73 11.98 1.33 9.31 5.32 15.13 23.08 16.65 31.52 5.45 10.79 19.11 33.57 14.30 78.40 20.96 8.60 16.68 36 E5_Da KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 1.94 0.00 0.00 1.67 0.00 0.00 0.00 2.41 0.00 3.16 0.00 0.00 0.00 2.88 0.00 3.00 0.00 37 E5a_E6a KnownJunction 0 7.41 0.00 3.02 7.66 0.00 4.77 10.47 1.85 13.14 2.61 10.11 23.71 6.66 21.96 5.19 3.85 21.79 24.91 3.67 69.86 17.05 9.12 7.60 38 ER5b ExonRegion 0 0.00 0.00 0.00 0.97 2.17 1.43 1.34 0.00 0.00 0.62 0.00 0.21 0.00 0.44 0.00 0.28 2.67 0.15 0.00 0.74 0.00 0.60 0.00 39 ER5c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.41 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER5d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER6a ExonRegion 0 4.83 3.76 2.20 6.99 2.56 6.29 10.63 4.12 10.57 6.02 15.87 15.00 16.50 33.08 7.43 19.07 26.58 39.20 20.98 80.39 23.15 8.43 10.38 42 E6_Da KnownBoundary 0 0.00 5.13 0.00 1.93 0.00 2.61 1.81 2.55 1.79 4.67 9.79 6.30 14.77 24.31 4.45 11.88 21.69 39.59 4.71 59.70 16.43 7.23 3.41 43 ER6b ExonRegion 0 6.01 5.24 3.42 5.72 5.79 8.75 11.26 3.97 7.43 4.96 22.50 25.13 23.06 27.14 11.48 14.53 24.23 30.63 10.26 77.58 18.86 6.30 12.94 44 E6_Db KnownBoundary 0 2.74 12.96 1.42 10.45 17.06 9.60 9.72 4.56 12.96 4.92 23.64 49.37 37.82 39.50 13.35 10.51 22.91 12.81 4.24 89.10 14.15 0.00 6.91 45 ER6c ExonRegion 0 8.50 6.10 2.26 6.83 7.84 8.26 20.23 2.22 9.12 5.62 17.70 41.73 44.61 25.47 7.40 19.03 26.17 12.08 10.76 69.93 14.85 4.86 6.68 46 E6_Dc KnownBoundary 1 2.74 10.06 1.24 7.09 8.49 0.00 16.65 2.42 9.98 5.78 17.00 50.42 79.22 38.20 0.00 7.86 42.92 19.65 16.47 63.34 8.46 2.27 11.95 47 E6c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER6d ExonRegion 0 3.57 10.61 0.21 2.75 2.68 2.64 13.26 1.30 3.94 1.90 19.84 37.07 37.23 27.15 9.97 12.63 14.13 7.68 7.37 44.71 2.62 6.77 11.20 49 E6_Dd NovelBoundary 0 3.63 0.00 0.00 7.26 17.32 2.90 15.15 4.03 6.60 4.19 20.06 43.06 45.78 11.77 14.22 3.25 9.07 18.32 13.37 82.77 11.18 5.57 7.60 50 I6 Intron 0 7.99 9.98 3.24 13.81 14.44 17.76 27.11 6.46 11.21 8.89 13.08 33.39 40.23 19.90 5.43 10.85 16.51 13.94 13.53 61.56 7.29 10.23 8.53 51 I6_SR1 SilentIntronRegion 0 6.75 2.63 0.66 5.42 3.46 5.23 18.73 5.30 4.30 5.01 17.73 26.44 41.85 27.89 7.01 18.96 17.41 19.15 17.82 63.85 15.74 6.83 9.54 52 I6_AR2 ActiveIntronRegion 0 6.22 5.39 3.59 3.98 4.91 8.61 20.83 5.27 4.94 6.85 12.39 31.89 52.62 23.80 5.99 10.24 14.97 14.12 9.18 59.77 9.23 5.14 7.37 53 I6_SR2 SilentIntronRegion 0 7.37 5.20 2.25 6.74 6.90 12.47 24.94 4.52 8.45 3.11 15.09 35.46 45.58 25.85 2.26 11.72 25.48 17.95 7.78 62.33 10.51 7.32 6.71 54 I6_AR3 ActiveIntronRegion 0 5.32 3.41 4.90 12.30 14.68 7.48 26.87 4.48 7.91 4.99 14.16 20.59 31.06 17.21 0.00 3.78 14.99 18.33 10.24 53.88 5.48 5.29 0.95 55 I6_AR4 ActiveIntronRegion 0 6.26 5.66 1.75 11.92 9.87 8.85 31.80 2.78 13.74 5.88 16.00 37.07 32.52 21.98 3.24 9.96 22.31 18.14 11.85 69.14 5.38 8.88 4.24 56 I6_SR3 SilentIntronRegion 0 5.28 5.66 3.56 7.96 6.40 8.26 26.24 6.65 6.10 7.38 14.32 23.33 16.72 21.92 4.41 8.82 18.13 13.46 14.17 60.71 7.71 7.49 11.38 57 I6_AR5 ActiveIntronRegion 0 6.34 8.41 3.66 11.58 9.35 11.91 26.98 8.03 8.83 8.62 13.10 46.94 34.76 14.81 6.25 10.85 21.00 8.07 17.68 66.35 3.79 9.10 7.72 58 I6_SR4 SilentIntronRegion 0 4.56 4.93 1.28 6.62 4.48 10.77 24.95 3.99 3.26 5.45 11.87 28.00 17.23 16.86 5.31 10.74 18.41 12.56 10.98 36.74 9.51 7.47 11.27 59 I6_AR6 ActiveIntronRegion 0 7.58 8.89 1.94 12.03 15.48 16.52 25.73 7.70 6.61 8.17 13.01 44.98 63.39 18.94 8.14 10.82 12.01 11.42 10.97 66.98 5.49 7.70 7.57 60 I6_SR5 SilentIntronRegion 0 8.56 8.33 3.03 15.08 11.44 13.41 25.79 5.04 7.75 7.38 11.57 39.03 50.61 17.59 5.53 8.53 13.45 8.32 9.47 49.74 5.00 9.36 7.78 61 I6_AR7 ActiveIntronRegion 0 7.47 12.17 3.66 16.82 12.96 15.48 22.49 4.47 11.99 6.70 10.45 31.34 34.89 16.00 6.86 10.87 12.73 12.61 13.36 65.90 6.67 11.78 8.92 62 I6_SR6 SilentIntronRegion 0 11.48 12.92 3.90 19.41 19.84 24.32 29.65 7.02 15.70 10.60 12.86 28.82 41.94 20.58 6.12 12.67 17.66 17.88 15.68 66.22 8.27 13.37 9.61 63 I6_AR8 ActiveIntronRegion 0 5.84 21.67 3.38 20.07 35.19 44.69 38.90 8.51 19.51 16.65 13.64 33.06 36.10 19.37 4.41 9.97 12.18 11.07 22.45 60.01 7.04 15.94 11.25 64 I6_SR7 SilentIntronRegion 0 5.79 15.71 4.11 20.20 30.03 33.92 26.25 16.78 20.60 24.10 12.33 42.80 51.21 15.02 1.89 5.20 4.07 6.24 8.65 43.20 3.95 10.98 3.40 65 I6_AR9 ActiveIntronRegion 0 5.79 16.62 2.52 7.43 33.64 27.95 21.59 5.81 12.80 8.15 12.06 47.74 33.89 15.29 1.74 7.17 6.29 7.54 5.65 32.37 0.97 10.31 3.60 66 E7_Aa NovelBoundary 1 3.04 14.87 1.21 17.35 16.21 23.51 32.02 4.11 2.37 6.10 9.84 27.01 60.06 33.26 0.00 13.07 0.00 3.40 4.33 63.21 3.15 6.18 3.33 67 ER7a ExonRegion 1 6.50 18.29 5.88 27.78 41.46 42.05 30.31 17.33 26.12 23.25 11.03 38.93 36.88 17.46 3.38 9.57 7.25 6.88 9.32 53.67 3.38 15.09 9.02