Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GORAB Gene 0 39.05 47.44 17.10 23.58 36.12 19.29 20.10 22.70 17.24 17.98 23.74 54.30 71.97 38.33 35.17 26.34 61.27 10.72 9.33 17.74 29.76 66.90 55.70 2 367763 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 1.39 0.00 3 367762 Transcript 0 1.16 0.22 0.99 1.45 2.89 1.19 2.96 1.42 2.55 0.20 1.59 3.36 11.63 2.04 1.49 1.19 8.02 0.33 0.00 2.12 0.57 4.69 6.36 4 498166 Transcript 0 0.00 12.70 1.54 11.72 4.33 0.00 9.01 0.00 4.08 4.38 5.05 6.30 0.00 0.00 0.00 3.85 3.93 8.66 4.24 3.07 5.13 8.08 0.00 5 464798 Transcript 0 1.56 5.73 3.62 3.33 4.66 3.62 1.36 5.10 3.42 3.52 0.87 4.98 8.48 1.72 3.14 2.00 2.31 1.42 0.14 1.43 0.07 7.91 9.54 6 465717 Transcript 0 11.33 3.11 0.95 4.10 8.64 2.19 6.09 2.78 3.87 2.67 3.67 12.05 29.22 12.30 2.82 8.17 17.03 3.03 0.62 6.39 6.15 8.57 13.49 7 498600 Transcript 0 20.73 18.94 6.70 12.81 14.66 3.88 18.94 10.79 7.50 11.17 10.76 17.64 38.57 9.43 5.44 6.45 21.20 6.15 3.91 7.63 6.00 14.11 17.55 8 475113 Transcript 0 13.44 4.31 2.88 1.90 10.58 2.81 2.85 2.72 2.34 1.74 3.28 4.79 13.79 11.10 5.49 2.75 6.80 0.76 1.40 1.48 6.14 3.28 8.10 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 1.39 0.00 10 ER1b ExonRegion 0 7.30 5.80 0.00 1.43 6.56 8.53 11.19 1.38 0.93 5.10 3.96 0.00 3.28 7.71 4.06 5.20 16.34 1.29 0.00 4.04 6.61 6.67 4.70 11 E1_Ad KnownBoundary 0 20.30 29.86 1.15 7.36 30.14 32.99 34.23 4.52 3.12 18.05 11.85 0.00 6.33 22.49 4.45 14.01 50.21 4.10 0.00 14.76 26.63 19.66 10.76 12 ER1c ExonRegion 0 12.60 12.69 0.00 3.63 10.70 15.89 17.09 3.37 1.24 12.45 5.80 0.00 4.69 13.07 8.70 7.22 26.09 3.70 1.06 9.02 8.81 12.90 5.87 13 ER1d ExonRegion 0 14.38 21.70 7.09 9.65 11.66 25.07 8.35 7.39 8.41 14.39 18.03 2.78 21.78 32.51 12.10 54.16 72.50 16.71 18.32 10.03 45.04 38.27 156.64 14 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.89 0.00 2.58 5.55 6.82 0.00 4.45 3.33 16.08 9.87 0.00 2.43 17.36 0.00 3.33 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 3.90 3.65 0.00 2.25 4.89 3.36 4.51 0.00 5.40 0.00 0.00 0.00 8.29 21.13 9.37 0.00 3.26 8.28 0.00 20.57 16 E1a_E4b KnownJunction 0 3.04 6.58 2.90 11.85 0.00 0.00 0.00 0.00 10.73 9.05 17.69 0.00 13.64 7.12 8.90 15.81 62.37 6.51 18.73 8.18 25.58 33.56 80.50 17 Ix Intron 0 0.68 1.29 1.14 0.64 2.51 4.02 2.90 0.81 2.30 2.67 4.23 1.12 9.67 11.69 1.39 7.44 25.82 4.60 2.99 3.99 12.40 6.52 17.58 18 Ix_SR1 SilentIntronRegion 0 0.68 1.30 1.16 0.64 2.54 4.07 2.94 0.82 2.33 2.71 4.29 1.13 9.79 11.83 1.41 7.53 26.14 4.66 3.03 4.04 12.55 6.59 17.80 19 I1 Intron 0 4.40 3.96 1.72 1.91 6.46 6.03 6.93 2.59 5.56 2.29 6.23 18.97 51.01 14.78 5.51 5.39 25.47 1.54 2.99 7.28 4.29 14.96 15.77 20 I1_AR1 ActiveIntronRegion 0 4.52 4.18 2.16 2.26 6.90 7.24 6.90 2.97 5.42 2.45 5.14 16.83 41.29 14.16 6.11 5.42 24.88 0.81 2.45 8.43 3.89 16.06 14.36 21 I1_SR1 SilentIntronRegion 0 4.16 3.42 0.56 1.00 5.40 2.93 7.10 1.65 6.02 1.91 9.17 24.89 77.41 16.62 3.99 5.36 27.41 3.50 4.47 4.35 5.39 12.26 19.64 22 E2_Aa NovelBoundary 0 3.78 12.43 1.48 3.76 24.19 0.00 9.45 2.55 0.00 4.84 2.37 31.51 65.90 21.78 0.00 12.30 43.01 2.40 9.04 6.39 9.02 19.35 56.43 23 ER2a ExonRegion 0 4.63 6.87 2.03 6.15 6.82 9.32 5.92 6.96 7.65 8.00 12.05 34.01 53.76 23.67 5.23 17.09 45.49 16.87 8.35 9.97 19.34 18.28 55.39 24 E2_Da NovelBoundary 1 0.00 2.70 4.76 3.93 11.63 4.77 12.50 11.58 2.86 2.34 9.00 0.00 28.57 14.19 5.19 0.00 31.23 9.29 0.00 0.00 20.14 5.76 11.69 25 E2a_E3b KnownJunction 0 0.00 12.70 1.54 11.72 4.33 0.00 9.01 0.00 4.08 4.38 5.05 6.30 0.00 0.00 0.00 3.85 3.93 8.66 4.24 3.07 5.13 8.08 0.00 26 E2a_E4b KnownJunction 0 0.00 3.22 3.31 4.43 0.00 5.62 0.00 3.90 3.04 3.84 2.11 0.00 8.28 0.00 0.00 0.00 4.77 4.27 0.00 0.00 0.00 0.00 25.10 27 I2 Intron 0 5.24 3.21 2.01 1.12 2.76 3.03 6.83 1.06 2.78 1.88 3.45 26.50 30.40 9.52 4.27 6.54 13.39 1.46 2.63 6.29 3.49 14.46 11.51 28 I2_SR1 SilentIntronRegion 0 5.24 3.22 2.01 1.12 2.76 3.03 6.83 1.06 2.79 1.88 3.46 26.54 30.44 9.53 4.28 6.55 13.40 1.46 2.63 6.29 3.49 14.48 11.52 29 E3_Aa NovelBoundary 1 20.15 15.00 3.05 4.10 12.56 7.95 16.52 0.00 2.92 2.79 0.00 46.52 59.09 18.72 4.45 6.92 22.25 3.98 0.00 5.62 8.59 23.70 15.45 30 ER3a ExonRegion 0 20.75 3.45 1.29 6.44 15.76 4.38 11.14 1.78 2.81 4.14 6.66 14.07 28.27 14.39 3.06 16.35 18.80 6.06 1.24 9.63 7.59 8.68 20.15 31 E3_Ab KnownBoundary 0 71.64 8.75 1.83 17.18 33.62 12.61 37.05 13.80 7.12 9.78 16.53 38.41 47.40 44.09 14.46 52.72 55.07 14.59 4.05 18.02 22.24 19.72 52.16 32 ER3b ExonRegion 0 28.56 15.30 10.51 17.24 27.26 13.66 20.85 15.62 10.43 16.11 18.44 52.30 70.10 27.74 7.29 34.76 59.48 14.85 8.18 17.35 23.33 41.07 41.48 33 E3a_E4b KnownJunction 0 12.67 30.46 13.25 15.42 28.86 4.94 29.99 19.76 15.57 16.04 16.37 61.52 82.46 30.84 13.35 30.50 90.79 11.57 8.38 24.86 23.66 48.13 25.35 34 I3 Intron 0 1.98 1.70 0.63 1.80 2.64 2.08 2.22 1.52 0.82 1.52 2.38 5.94 16.25 2.53 1.14 0.59 4.39 0.54 0.47 2.20 2.61 11.09 4.78 35 I3_SR2 SilentIntronRegion 0 2.56 2.46 0.79 1.76 2.54 2.07 2.98 1.78 0.64 1.48 1.84 6.05 22.99 2.64 1.31 0.51 5.42 0.72 0.00 2.76 1.71 13.51 6.35 36 E4_Aa NovelBoundary 0 9.93 11.97 0.00 1.53 0.00 5.34 2.16 1.68 0.00 1.42 0.00 5.85 13.64 2.47 0.00 0.00 16.55 0.00 0.00 0.00 0.00 25.60 4.35 37 ER4a ExonRegion 0 1.82 4.67 0.66 0.92 1.99 0.21 1.88 1.45 1.96 1.95 2.10 12.17 22.92 4.56 0.12 1.36 7.42 0.78 0.19 3.81 3.42 8.01 12.81 38 E4_Ab KnownBoundary 0 14.74 10.00 1.18 0.00 0.00 0.00 4.37 2.55 3.21 0.00 2.58 0.00 12.66 7.18 0.00 0.00 9.16 2.49 0.00 0.00 0.00 19.53 25.18 39 ER4b ExonRegion 0 24.44 23.65 21.98 39.28 44.05 23.37 25.00 32.69 28.30 33.77 60.15 75.77 140.21 75.10 37.85 75.77 157.03 48.39 22.50 34.94 80.11 92.54 166.70 40 E4_Da KnownBoundary 0 35.78 40.85 38.76 55.44 87.27 72.17 80.69 38.20 32.18 36.34 72.18 96.33 197.06 113.37 61.56 193.88 176.34 39.13 44.24 60.66 102.18 123.20 500.74 41 E4a_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER4c ExonRegion 0 47.85 78.42 22.37 30.67 49.78 33.88 36.28 28.17 30.53 30.73 48.95 86.55 140.29 80.67 36.87 52.80 138.90 24.64 13.65 33.27 79.75 79.39 111.85 43 E4_Db KnownBoundary 0 0.00 0.00 0.00 3.36 0.00 0.00 2.25 0.00 0.00 0.00 2.00 7.65 13.31 0.00 0.00 0.00 12.72 0.00 0.00 0.00 0.00 0.00 3.33 44 E4b_E5a KnownJunction 0 27.41 21.18 4.97 10.55 16.04 29.19 18.55 7.76 12.30 15.28 35.69 69.32 87.98 48.97 13.35 23.58 56.29 3.61 13.65 2.94 22.24 52.42 54.63 45 E4_Dc KnownBoundary 0 3.78 6.12 1.83 0.00 0.00 0.00 0.00 3.66 4.28 1.34 2.68 0.00 21.43 2.47 4.94 0.00 11.22 0.00 0.00 3.26 2.90 0.00 0.00 46 E4c_E5a KnownJunction 0 39.64 33.22 12.74 24.71 27.33 7.55 35.99 20.13 13.05 20.39 19.43 23.11 54.22 14.30 10.75 11.54 34.97 11.52 7.62 11.44 8.59 20.21 22.28 47 ER4d ExonRegion 1 32.81 38.13 12.25 26.92 31.44 19.71 31.11 24.20 21.92 21.79 25.13 29.22 87.94 33.29 10.88 8.92 61.89 12.93 10.35 11.17 22.59 24.48 38.18 48 ER4e ExonRegion 0 1.90 2.77 0.61 1.77 1.52 0.00 1.04 3.79 4.93 1.20 0.68 10.04 30.17 10.21 2.57 0.00 15.27 0.00 0.00 3.14 4.71 8.45 6.84 49 E4_Dd NovelBoundary 0 0.00 0.00 0.00 3.40 4.33 8.69 11.79 2.46 4.80 4.35 6.79 7.50 33.93 6.89 0.00 3.93 16.92 0.00 12.99 9.20 0.00 16.23 3.67 50 I4 Intron 0 8.98 3.87 2.69 4.64 5.91 3.91 3.67 2.81 3.65 2.34 2.60 7.55 19.64 6.47 3.65 3.02 10.48 0.51 1.46 3.40 2.85 9.26 7.61 51 I4_SR1 SilentIntronRegion 0 8.99 3.88 2.69 4.65 5.92 3.92 3.67 2.82 3.65 2.35 2.60 7.55 19.66 6.48 3.66 3.02 10.49 0.51 1.46 3.41 2.86 9.27 7.62 52 E5_Aa NovelBoundary 0 0.00 12.30 5.71 5.43 3.82 0.00 19.25 4.35 7.96 1.45 2.68 5.55 29.06 6.89 10.26 8.37 9.35 2.40 0.00 2.43 3.15 11.51 0.00 53 ER5a ExonRegion 0 63.18 53.79 21.17 40.57 44.33 38.29 30.36 33.81 32.38 35.24 68.43 97.96 171.78 99.26 57.57 65.94 155.53 33.91 16.02 36.96 76.68 101.28 103.13 54 E5_Da NovelBoundary 0 0.00 15.13 3.31 0.00 3.57 5.45 0.00 9.28 5.84 4.32 4.74 12.60 27.11 2.47 0.00 4.36 0.00 0.00 0.00 3.26 11.61 11.76 16.22 55 E5a_E6b KnownJunction 0 76.68 59.20 21.38 33.36 37.35 49.91 30.60 26.99 26.01 27.61 90.18 56.42 128.73 67.99 72.81 66.91 124.45 30.10 9.22 29.21 101.62 87.81 83.83 56 I5 Intron 0 5.29 3.82 1.61 1.85 5.26 4.20 3.38 4.61 4.05 2.86 2.16 10.86 23.61 6.81 3.86 3.23 14.73 0.43 0.19 4.00 2.59 12.17 8.97 57 I5_SR1 SilentIntronRegion 0 5.29 3.83 1.61 1.85 5.27 4.21 3.39 4.62 4.06 2.87 2.16 10.88 23.65 6.82 3.87 3.23 14.76 0.43 0.19 4.00 2.59 12.19 8.98 58 E6_Aa NovelBoundary 1 21.04 11.71 2.96 2.76 3.82 18.06 4.42 8.50 2.98 7.87 0.00 0.00 65.26 9.59 5.81 4.36 8.42 0.00 0.00 2.94 2.90 11.51 10.33 59 ER6a ExonRegion 0 13.44 4.31 2.88 1.90 10.58 2.81 2.85 2.72 2.34 1.74 3.28 4.79 13.79 11.10 5.49 2.75 6.80 0.76 1.40 1.48 6.14 3.28 8.10 60 E6_Ab KnownBoundary 0 17.11 9.54 3.02 1.43 15.96 0.00 3.93 2.38 3.12 1.56 4.63 5.85 28.73 24.02 9.64 4.19 7.95 0.00 4.80 3.00 0.00 6.25 16.73 61 E6_Ac KnownBoundary 0 105.65 66.76 19.63 34.96 52.29 60.53 28.44 33.72 25.26 29.95 51.86 63.92 54.38 71.22 32.76 67.67 104.82 24.50 24.94 35.60 85.44 85.67 86.99 62 ER6b ExonRegion 0 86.87 62.60 23.23 36.26 44.32 57.72 28.72 36.60 31.31 34.11 81.52 79.25 110.32 91.73 62.31 72.62 132.90 26.35 21.74 35.52 104.53 99.19 111.72 63 ER6c ExonRegion 0 59.70 91.35 22.44 45.93 46.36 34.00 39.30 34.05 31.15 26.28 63.92 104.80 94.72 86.49 51.26 50.02 151.02 25.14 28.18 30.88 112.22 97.07 94.32 64 E6_Da KnownBoundary 0 2.74 0.00 0.00 3.20 0.00 0.00 4.11 1.81 4.02 1.10 2.11 0.00 0.00 7.48 0.00 3.85 0.00 1.66 0.00 8.25 2.59 3.00 0.00 65 E6a_E7a KnownJunction 1 65.79 83.01 30.40 46.31 44.74 59.57 40.23 28.18 27.49 22.08 56.75 70.22 178.24 127.91 30.04 50.67 165.87 25.83 19.01 36.69 103.66 95.28 74.61 66 ER6d ExonRegion 0 1.16 0.22 0.99 1.45 2.89 1.19 2.96 1.42 2.55 0.20 1.59 3.36 11.63 2.04 1.49 1.19 8.02 0.33 0.00 2.12 0.57 4.69 6.36 67 E7_Aa NovelBoundary 0 16.08 5.79 8.52 5.73 23.01 0.00 5.74 4.23 5.32 1.32 0.00 6.30 0.00 6.95 0.00 0.00 3.65 1.95 0.00 0.00 2.53 5.76 0.00 68 ER7a ExonRegion 0 74.26 69.47 33.65 41.85 67.26 44.83 35.27 28.41 32.14 31.97 58.77 86.23 112.99 104.62 73.51 70.09 154.34 30.72 29.13 34.02 109.48 122.84 148.93 69 E7_Da KnownBoundary 0 111.06 88.08 36.60 49.08 116.47 43.72 58.29 46.54 49.88 51.15 65.60 99.18 76.13 105.72 71.82 44.35 186.91 47.96 23.53 36.75 81.92 134.84 152.03 70 ER7b ExonRegion 0 88.24 110.61 36.38 47.98 76.07 33.08 38.04 49.14 30.16 33.20 33.17 107.08 121.74 54.21 78.14 32.60 76.40 8.20 12.52 29.44 25.17 139.64 65.24 71 E7_Db KnownBoundary 0 6.22 19.08 1.30 3.73 34.47 5.56 5.56 5.59 3.27 2.31 0.00 0.00 20.62 4.59 5.93 0.00 0.00 0.00 0.00 3.00 0.00 20.82 3.59 72 E7_Dc KnownBoundary 0 0.00 9.14 5.41 4.00 3.65 7.89 0.00 12.77 6.11 1.45 0.00 15.00 6.82 2.24 9.15 0.00 0.00 0.00 0.00 3.07 2.72 11.39 4.35 73 ER7c ExonRegion 1 10.58 27.45 7.35 5.45 34.78 14.21 4.63 18.58 12.66 3.73 0.97 8.66 43.38 8.93 26.11 0.00 0.00 0.00 1.59 7.45 2.20 27.09 8.81 74 ER7d ExonRegion 0 4.68 13.96 7.56 5.56 13.99 5.24 4.09 11.40 7.21 6.71 0.51 14.95 17.16 5.15 9.43 2.74 2.18 0.00 0.42 4.29 0.22 23.72 3.52