Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIFAP3 Gene 0 58.83 208.21 69.22 144.31 157.98 248.38 80.91 134.45 278.32 239.94 156.78 133.80 157.32 121.37 122.12 114.50 143.01 59.48 44.74 136.88 51.15 108.29 55.25 2 490550 Transcript 0 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.04 0.06 0.03 0.02 0.00 0.02 0.00 0.00 0.04 0.01 0.01 0.02 0.01 0.00 0.00 3 361580 Transcript 1 19.69 93.23 17.86 44.11 115.23 221.03 50.55 42.76 107.17 111.96 123.87 12.77 14.85 90.06 62.31 97.80 131.65 100.14 72.19 142.47 69.19 58.62 66.66 4 367767 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 2.75 0.00 7.74 0.00 0.00 0.00 6.06 4.10 22.07 0.00 0.00 0.00 0.00 5.76 0.00 5 367765 Transcript 0 0.38 0.18 0.20 0.44 0.72 0.33 0.14 1.21 1.39 0.37 0.21 3.06 2.43 0.56 0.68 1.07 1.19 0.00 0.00 0.42 0.00 0.00 0.26 6 474292 Transcript 0 2.00 2.73 0.38 2.56 3.93 3.21 3.48 1.54 5.90 3.80 3.50 5.05 8.20 3.77 4.38 3.76 4.14 0.37 0.39 3.10 0.66 1.90 1.07 7 ER1a ExonRegion 0 0.00 0.00 0.01 0.00 0.00 0.02 0.02 0.02 0.07 0.11 0.07 0.05 0.00 0.04 0.00 0.00 0.08 0.01 0.02 0.04 0.03 0.00 0.00 8 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 9.23 55.70 4.75 15.41 41.57 262.10 31.20 17.70 41.94 31.24 11.42 1.68 0.00 19.07 12.49 13.26 26.56 58.96 36.04 63.22 57.13 19.02 34.12 10 E2_Ab KnownBoundary 0 2.89 33.42 14.69 18.91 42.53 210.90 21.29 38.86 79.66 63.93 6.90 0.00 0.00 11.83 10.26 7.69 24.78 107.78 3.67 34.64 19.21 44.15 11.10 11 ER2b ExonRegion 1 17.06 67.43 16.43 31.21 58.87 142.03 40.77 42.97 109.98 96.58 72.79 2.54 7.25 67.70 40.27 86.33 90.62 76.65 36.13 95.11 77.77 53.75 56.36 12 E2a_E4a KnownJunction 1 30.15 130.77 30.96 72.82 188.88 179.95 69.91 67.81 172.39 192.68 236.32 23.86 29.71 161.05 112.12 182.35 236.75 141.31 108.33 221.73 81.24 98.22 99.19 13 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 2.75 0.00 7.74 0.00 0.00 0.00 6.06 4.10 22.07 0.00 0.00 0.00 0.00 5.76 0.00 14 ER3a ExonRegion 0 0.76 0.37 0.40 0.88 1.45 0.67 0.29 2.42 2.79 0.74 0.42 6.12 4.86 1.11 1.35 2.14 2.38 0.00 0.00 0.85 0.00 0.00 0.53 15 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER4a ExonRegion 0 13.40 82.13 39.15 83.15 132.51 354.52 62.21 104.03 290.06 216.26 193.36 71.01 64.63 130.83 70.79 142.66 194.53 134.34 44.45 193.37 83.06 118.38 89.23 17 E4a_E5a KnownJunction 0 25.12 186.48 47.07 128.22 215.28 629.86 118.14 133.65 364.43 315.47 385.73 165.50 124.18 156.93 127.57 216.27 379.62 71.09 59.20 258.86 77.84 137.04 72.05 18 ER5a ExonRegion 0 28.40 129.15 44.15 118.02 140.42 293.42 85.76 113.62 335.39 273.01 215.90 181.20 161.61 137.98 84.10 130.75 206.15 60.58 39.91 212.52 56.19 122.50 53.35 19 E5a_E6a KnownJunction 0 35.12 191.87 45.98 125.89 218.85 409.14 153.42 130.82 349.42 307.52 225.16 158.75 206.80 185.06 157.12 192.26 282.09 83.74 57.79 271.97 80.50 188.91 99.79 20 ER6a ExonRegion 0 36.47 164.68 48.31 154.61 183.48 390.08 120.01 128.28 386.46 338.75 269.78 298.04 305.52 213.75 114.39 214.10 267.20 83.87 48.41 253.00 90.82 173.60 97.38 21 E6a_E7a KnownJunction 0 21.04 193.32 65.93 185.96 191.26 360.42 121.67 155.42 452.77 385.39 264.70 251.63 256.64 232.09 111.87 192.51 252.64 87.84 62.21 268.26 82.97 170.47 114.39 22 ER7a ExonRegion 1 38.17 194.64 58.70 156.65 177.15 253.25 101.69 152.23 421.44 358.68 320.96 324.44 289.33 254.63 106.37 171.63 305.68 86.90 55.95 224.57 111.30 161.06 86.40 23 E7a_E8a KnownJunction 1 46.97 261.93 50.53 145.60 214.35 381.31 105.68 135.26 419.27 317.91 192.79 243.53 217.52 233.27 80.60 198.15 202.52 89.37 79.63 232.21 51.34 147.08 96.97 24 ER8a ExonRegion 0 22.39 237.79 56.07 148.25 160.90 340.80 96.62 148.03 440.22 347.92 252.01 311.63 336.33 235.39 118.63 204.75 249.47 98.46 71.21 222.69 98.38 125.38 110.22 25 E8_Da KnownBoundary 0 32.45 312.71 72.08 187.49 183.87 337.25 140.61 170.29 490.91 396.86 321.24 362.52 356.47 233.80 173.06 228.91 336.79 95.01 80.85 250.36 138.81 165.09 136.32 26 ER8b ExonRegion 0 52.10 378.25 68.95 165.73 203.84 332.02 143.93 164.01 462.76 392.20 330.91 326.76 349.02 272.41 138.89 205.40 319.17 81.27 77.14 206.11 104.50 201.42 94.19 27 E8b_E9a KnownJunction 0 76.09 512.15 68.60 169.14 196.60 396.99 202.31 177.81 460.15 420.34 289.65 336.26 381.31 329.16 165.28 199.35 238.43 72.09 62.40 165.23 60.36 199.44 81.44 28 ER9a ExonRegion 0 68.39 415.14 65.39 164.44 204.02 342.44 155.86 179.93 410.36 372.13 246.10 314.39 358.51 207.60 101.43 189.17 232.99 63.96 61.92 204.85 67.79 159.00 88.69 29 E9a_E10b KnownJunction 0 103.20 622.92 85.98 239.60 338.54 477.34 262.33 247.88 489.75 447.55 300.50 313.45 446.40 231.56 179.62 269.07 313.14 78.93 85.65 208.88 90.26 216.46 87.50 30 ER10a ExonRegion 0 2.00 2.73 0.38 2.56 3.93 3.21 3.48 1.54 5.90 3.80 3.50 5.05 8.20 3.77 4.38 3.76 4.14 0.37 0.39 3.10 0.66 1.90 1.07 31 E10_Ab KnownBoundary 0 3.19 0.00 0.00 2.00 3.90 5.28 5.70 0.00 4.51 2.71 0.00 6.30 13.64 4.94 9.64 0.00 8.60 0.00 0.00 3.26 3.15 0.00 0.00 32 ER10b ExonRegion 0 62.16 496.61 77.92 207.10 247.34 389.76 156.17 221.22 477.41 431.24 269.88 355.90 474.55 240.44 147.49 190.13 281.25 64.22 72.29 234.26 96.06 227.81 92.56 33 E10a_E11a KnownJunction 0 75.64 631.66 91.01 222.02 264.01 403.69 161.72 237.49 481.68 436.86 282.18 374.52 372.38 211.43 187.77 176.88 329.87 64.67 78.31 228.38 111.08 218.66 71.71 34 ER11a ExonRegion 0 62.61 591.91 94.47 245.19 251.87 390.27 174.23 247.72 518.20 452.26 313.89 329.58 420.28 208.81 148.48 219.43 323.92 99.41 95.26 271.65 106.10 212.00 85.55 35 E11_Da KnownBoundary 0 89.87 663.50 101.45 254.38 361.46 619.53 242.85 280.25 547.48 437.53 322.45 384.13 456.79 212.55 200.51 208.66 359.33 112.59 98.73 299.07 149.38 255.22 102.78 36 ER11b ExonRegion 0 69.34 446.41 86.36 233.71 330.35 494.58 178.42 223.83 511.31 426.14 301.92 399.52 467.97 228.90 201.06 229.75 226.97 131.34 67.02 238.72 82.55 245.90 117.82 37 E11b_E12a KnownJunction 0 72.38 435.51 95.71 293.60 368.25 428.16 197.19 227.26 537.64 493.45 364.57 382.77 595.58 277.12 219.05 228.83 239.64 151.80 65.88 282.13 63.57 233.42 112.76 38 ER12a ExonRegion 0 81.41 440.39 102.07 267.94 259.65 402.57 132.77 246.64 548.33 476.48 355.59 314.99 440.23 252.47 203.53 245.54 351.98 149.62 96.09 297.62 102.98 233.56 105.34 39 E12a_E13a KnownJunction 0 89.87 495.50 90.77 228.64 360.02 372.91 156.95 173.54 469.27 394.98 277.70 376.02 357.93 240.75 176.77 211.31 237.21 122.66 53.27 227.55 85.81 171.03 111.91 40 ER13a ExonRegion 0 74.10 401.22 92.17 198.86 322.71 524.41 166.61 172.67 441.72 403.44 307.60 306.53 361.23 227.55 228.77 209.73 264.27 111.21 80.30 268.51 84.72 176.93 103.45 41 E13a_E14a KnownJunction 0 89.87 348.89 120.25 207.00 343.12 521.46 162.52 175.51 461.45 442.23 299.92 213.82 289.27 196.13 231.66 179.95 243.29 97.66 77.65 264.23 56.71 180.09 120.96 42 ER14a ExonRegion 0 84.14 217.33 127.39 201.72 260.21 437.00 136.88 195.33 470.50 415.71 308.39 295.71 359.15 199.89 217.14 216.23 271.10 94.61 74.93 282.26 68.62 176.33 84.60 43 E14a_E15a KnownJunction 1 122.61 331.98 127.35 215.26 410.53 665.41 176.17 233.42 464.87 447.20 279.39 447.00 371.40 182.24 274.93 240.79 316.88 92.07 70.40 290.95 84.70 165.09 108.24 44 ER15a ExonRegion 0 89.44 298.02 125.58 210.27 365.82 579.12 173.80 229.46 454.14 424.12 301.05 283.64 322.53 214.00 235.13 209.50 276.54 93.17 70.56 251.36 87.97 192.11 94.49 45 E15a_E16a KnownJunction 0 153.58 350.60 135.42 202.87 374.79 680.91 262.19 235.31 473.40 458.99 290.76 245.03 354.85 184.18 166.39 207.47 283.12 95.63 68.71 249.28 79.88 178.92 66.84 46 ER16a ExonRegion 0 95.21 245.25 122.87 224.87 295.41 489.96 161.86 226.21 456.33 449.30 299.55 262.51 311.15 220.56 224.86 195.01 275.60 92.28 79.40 228.43 76.52 197.67 97.60 47 E16a_E17a KnownJunction 0 198.63 254.95 162.35 275.79 356.62 773.19 236.40 232.97 545.28 500.76 289.18 245.33 239.43 235.27 268.99 202.68 312.20 102.85 56.57 276.63 95.63 251.49 124.89 48 ER17a ExonRegion 0 136.82 315.45 177.79 276.58 349.52 594.94 175.69 263.15 549.62 486.13 299.98 218.12 243.14 241.67 266.64 217.30 286.10 109.94 96.75 270.55 76.76 217.98 98.14 49 E17a_E18a KnownJunction 0 166.18 355.73 167.62 303.96 346.43 620.61 196.08 266.53 513.02 509.14 281.02 191.61 274.49 249.63 341.55 131.93 280.32 67.90 49.51 230.68 87.17 167.29 67.95 50 ER18a ExonRegion 0 115.98 362.74 183.71 300.84 317.66 523.30 185.17 265.64 526.77 471.90 283.86 267.42 311.29 212.23 239.84 166.80 226.06 76.52 88.10 240.79 72.81 201.05 94.60 51 E18a_E19a KnownJunction 0 150.32 409.40 186.24 319.01 373.85 544.12 227.13 254.62 576.53 435.54 237.64 252.68 263.62 264.35 332.65 212.85 160.73 92.36 99.49 200.83 61.04 191.11 102.09 52 ER19a ExonRegion 0 178.53 461.62 181.18 329.94 474.26 566.22 219.25 291.02 606.11 517.03 283.24 232.38 276.44 278.23 307.30 227.30 214.10 95.67 72.86 247.67 75.36 236.26 82.26 53 E19a_E20a KnownJunction 0 262.79 730.33 191.77 328.70 597.11 727.25 286.35 334.88 642.07 584.41 330.56 197.61 358.74 287.25 356.76 267.62 228.89 76.23 102.40 245.70 100.70 221.18 105.85 54 ER20a ExonRegion 0 195.73 575.02 163.17 332.83 359.75 534.10 168.75 301.01 581.59 495.00 272.71 221.65 243.04 261.43 303.65 235.66 264.80 109.49 97.19 236.20 104.37 230.29 112.88 55 E20a_E21a KnownJunction 0 291.24 684.02 299.49 450.89 498.30 658.54 231.41 418.96 715.99 670.29 306.50 106.68 157.94 338.28 404.72 343.59 395.14 154.70 77.46 324.51 143.76 284.12 172.01 56 I20_AR1 ActiveIntronRegion 0 23.63 14.91 4.90 17.04 13.38 14.67 6.62 11.23 16.06 10.32 1.93 4.33 0.00 0.00 7.74 2.97 4.40 1.85 0.00 4.26 0.00 2.08 0.00 57 ER21a ExonRegion 0 171.84 552.22 190.43 348.56 491.21 629.30 203.51 334.77 553.41 527.73 274.80 164.09 156.98 249.03 370.11 281.07 234.07 141.39 126.14 260.38 128.43 223.77 135.50 58 E21a_E22a KnownJunction 0 135.28 579.50 184.80 274.29 403.91 600.28 170.87 298.73 423.81 388.80 233.22 203.47 230.18 191.48 377.65 160.90 138.66 144.38 125.84 225.63 68.51 190.50 116.44 59 I21_AR2 ActiveIntronRegion 1 0.35 3.22 0.00 1.51 0.44 0.30 2.58 3.45 5.22 1.11 0.00 26.48 32.62 2.76 0.34 1.40 4.65 0.45 1.51 7.40 0.36 0.34 0.95 60 I21_AR3 ActiveIntronRegion 1 0.00 3.16 0.00 0.45 0.00 0.00 8.53 3.46 7.14 7.52 0.00 0.96 37.52 10.47 0.00 8.92 0.00 1.85 0.00 12.77 0.00 2.08 0.00 61 I21_SR4 SilentIntronRegion 1 1.41 7.88 0.72 6.89 4.77 1.91 6.19 2.00 7.79 3.34 2.13 17.75 35.37 5.20 0.94 4.18 5.34 2.43 1.06 22.79 1.57 5.54 2.89 62 I21_SR5 SilentIntronRegion 0 4.52 11.99 1.42 10.54 7.67 11.46 8.99 7.02 29.10 10.28 7.76 20.96 42.38 5.56 1.84 8.10 12.10 6.49 3.82 26.19 3.68 9.79 4.00 63 I21_AR6 ActiveIntronRegion 0 1.68 6.95 0.18 11.75 9.27 18.92 9.02 7.66 34.82 17.54 4.54 23.55 33.29 6.87 0.98 7.81 5.06 5.16 6.31 24.85 1.70 12.40 6.48 64 I21_AR7 ActiveIntronRegion 0 5.18 50.73 1.48 54.95 25.91 34.06 15.87 23.44 72.22 27.05 12.61 20.22 32.42 10.86 2.81 9.23 13.00 9.59 4.49 33.25 5.73 19.26 7.16 65 I21_AR8 ActiveIntronRegion 0 6.25 40.17 5.07 65.47 30.27 39.60 16.17 32.37 73.59 32.45 6.60 29.73 43.44 7.14 5.29 8.96 13.39 7.69 2.38 30.01 5.60 17.19 3.15 66 I21_SR8 SilentIntronRegion 0 16.21 62.29 4.60 106.04 44.82 57.07 20.47 47.97 94.91 39.16 22.59 21.13 40.40 8.72 10.91 15.35 12.34 8.26 3.70 39.64 10.13 22.19 2.94 67 I21_AR9 ActiveIntronRegion 0 15.34 56.01 9.34 114.16 61.74 59.88 23.17 44.06 98.86 44.41 15.91 18.32 52.52 7.98 12.31 13.66 8.91 13.45 9.34 41.54 6.76 22.04 7.02 68 I21_SR9 SilentIntronRegion 0 17.52 65.29 13.36 132.57 66.64 82.10 24.53 52.46 100.70 51.46 15.20 14.25 30.10 8.54 14.47 9.53 12.45 7.54 8.86 31.65 8.76 22.37 5.81 69 I21_AR10 ActiveIntronRegion 0 22.58 96.48 20.15 200.34 69.57 95.77 18.98 62.42 129.41 75.95 18.47 13.95 39.08 2.35 24.18 11.89 13.94 11.50 5.31 29.08 8.81 26.39 2.94 70 I21_AR11 ActiveIntronRegion 0 20.51 86.52 18.29 178.02 80.02 78.29 29.51 57.20 120.31 73.84 24.35 43.50 22.33 6.30 21.00 17.34 11.95 12.80 9.63 40.07 3.10 23.32 4.27 71 I21_AR12 ActiveIntronRegion 0 19.06 79.55 16.07 181.55 81.34 88.96 33.35 68.13 102.32 71.76 10.95 16.33 29.89 6.90 17.28 12.45 7.92 6.42 2.04 30.57 2.65 30.95 3.88 72 I21_AR13 ActiveIntronRegion 0 48.47 117.31 14.51 148.17 78.15 73.22 29.98 53.03 84.10 54.36 5.57 17.34 24.61 6.50 17.36 8.59 4.43 4.96 1.71 23.84 1.18 24.83 5.29 73 I21_AR14 ActiveIntronRegion 1 34.47 101.97 12.52 100.97 63.07 58.16 22.13 34.21 64.72 23.45 12.43 11.02 32.16 5.69 28.74 11.46 9.90 14.60 4.10 29.18 3.78 9.82 7.55 74 E22_Aa NovelBoundary 0 37.34 76.63 17.92 261.67 104.07 101.31 31.62 89.99 142.30 74.03 15.69 0.00 13.31 14.54 19.66 19.48 4.11 45.89 8.09 40.59 10.01 27.49 11.95 75 ER22a ExonRegion 1 170.10 410.70 184.78 399.56 258.84 308.89 93.26 325.74 530.94 422.90 211.33 79.96 138.42 147.68 299.85 159.35 143.80 93.30 70.20 187.64 61.30 168.24 82.97