Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MRPL20 Gene 0 118.05 63.54 94.67 72.96 76.61 62.97 45.47 78.54 48.79 104.98 161.94 70.67 45.58 212.31 346.01 220.19 186.22 47.77 62.23 54.37 84.59 93.22 92.45 2 344843 Transcript 0 9.00 6.08 6.26 5.91 3.51 6.20 5.79 8.30 1.88 11.89 11.48 8.66 2.72 16.36 28.65 11.16 4.91 2.40 1.91 5.84 4.14 7.03 2.90 3 482352 Transcript 0 38.82 18.02 19.03 23.59 32.99 25.79 26.52 19.79 13.00 28.19 23.32 20.51 21.96 38.63 46.66 60.52 30.35 18.22 20.71 18.33 24.58 20.17 33.13 4 487659 Transcript 0 31.22 8.56 17.80 12.34 26.10 19.93 14.10 17.33 11.36 24.86 21.70 22.68 30.64 37.23 51.73 39.15 29.66 12.94 8.77 6.96 20.07 16.46 20.19 5 477686 Transcript 0 0.00 0.00 1.83 4.00 3.90 0.00 0.00 0.00 5.15 0.00 2.68 18.91 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 3.15 2.63 0.00 6 492508 Transcript 0 52.64 15.14 23.13 24.83 19.11 18.60 18.68 29.91 14.01 35.96 34.53 18.00 12.17 41.46 58.67 64.96 34.19 15.06 5.84 16.30 25.47 27.24 28.01 7 493287 Transcript 0 17.56 0.00 2.51 1.43 8.57 0.00 3.80 3.86 7.75 8.00 8.00 0.00 20.29 19.37 38.94 4.36 12.16 6.80 0.00 0.00 5.00 5.69 20.23 8 IG10 Intergenic 0 6.43 5.88 4.33 7.83 25.79 13.19 10.79 11.07 10.37 13.56 7.88 15.67 16.32 18.84 13.13 8.15 5.63 0.95 2.13 2.99 1.63 3.09 2.39 9 IG10_SR3 SilentIntergenicRegion 0 9.01 8.44 5.78 10.64 37.12 18.62 15.45 15.74 13.67 16.37 9.66 23.08 23.62 25.32 16.24 10.49 8.29 1.10 2.78 3.25 1.93 4.55 3.21 10 IG10_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 3.09 3.44 7.73 0.00 0.00 4.87 3.26 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1a ExonRegion 0 7.41 4.83 4.19 0.91 4.35 7.64 4.96 0.00 0.31 1.77 3.62 0.00 4.49 9.00 10.88 5.08 4.54 0.00 0.00 0.62 4.32 1.56 1.10 12 E1_Ac KnownBoundary 1 683.75 340.99 38.14 14.32 226.57 446.11 175.11 18.32 8.91 16.33 195.52 24.31 12.66 335.63 1779.47 973.25 558.77 22.88 201.14 105.59 135.85 184.62 353.23 13 ER1b ExonRegion 1 336.43 206.22 48.46 37.97 112.14 241.98 104.83 26.16 15.66 56.88 130.29 6.69 8.74 223.39 919.96 539.31 317.79 24.86 129.15 65.18 93.56 129.84 243.61 14 ER1c ExonRegion 1 867.64 503.83 168.88 114.15 272.60 495.74 236.67 81.50 58.16 170.71 372.00 23.48 25.44 720.72 1969.69 1400.95 756.71 99.55 388.81 167.38 258.70 396.18 669.82 15 E1_Ad KnownBoundary 1 965.58 511.95 282.10 248.12 291.51 351.45 235.78 165.04 111.57 318.50 435.43 65.87 52.76 789.87 1245.57 1371.78 619.92 200.14 447.82 167.27 314.69 421.29 730.45 16 ER1d ExonRegion 1 449.33 298.43 241.43 156.35 247.53 195.78 166.12 151.07 110.39 250.17 480.59 59.32 56.19 482.60 790.68 595.71 667.16 162.98 241.51 134.25 269.28 179.96 281.58 17 E1a_E2a KnownJunction 1 144.10 62.42 203.84 103.05 63.41 36.91 13.34 153.74 83.56 224.11 728.66 99.48 82.30 240.86 581.62 182.86 1173.82 36.35 36.33 100.73 437.38 47.64 57.79 18 E2_Ab NovelBoundary 1 88.61 55.45 369.38 218.29 20.71 24.47 19.61 243.08 150.14 401.26 599.68 95.58 45.29 304.32 571.61 246.52 707.53 103.34 62.21 200.32 307.03 141.76 88.86 19 ER2a ExonRegion 1 100.53 50.10 304.56 166.77 40.26 31.76 12.58 206.16 124.02 336.04 763.85 127.13 65.66 316.70 598.58 224.26 1074.89 86.93 58.06 165.67 420.01 112.98 80.76 20 ER2b ExonRegion 0 173.05 92.61 498.75 371.52 135.38 75.89 59.01 332.81 198.33 469.56 897.54 199.98 141.39 1203.64 2360.48 1983.31 1044.90 320.49 569.82 306.53 392.58 517.93 842.52 21 E2_Da KnownBoundary 0 13.04 0.00 29.39 22.01 4.16 11.58 6.62 36.19 18.17 52.30 28.01 42.76 55.03 45.79 72.32 73.48 34.32 31.71 17.32 11.95 10.63 19.41 38.24 22 E2a_E2c KnownJunction 0 0.00 0.00 1.83 4.00 3.90 0.00 0.00 0.00 5.15 0.00 2.68 18.91 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 3.15 2.63 0.00 23 E2a_E2e KnownJunction 0 114.24 86.04 495.37 399.98 493.46 185.46 163.40 324.90 205.38 385.07 586.99 281.49 112.33 882.63 1694.67 1073.82 597.19 316.41 280.01 273.69 261.75 323.86 405.13 24 ER2c ExonRegion 0 25.87 3.32 17.53 6.19 11.04 13.90 7.77 16.07 12.36 31.99 21.82 19.62 24.82 38.90 57.23 35.01 28.51 14.36 7.23 6.57 24.08 13.70 19.33 25 E2_Ac KnownBoundary 0 20.08 0.00 4.82 3.90 15.28 20.10 8.52 4.27 3.27 13.70 9.90 6.30 18.99 29.02 18.54 21.36 20.38 11.03 7.91 3.20 0.00 5.76 16.30 26 ER2d ExonRegion 0 19.81 7.98 16.72 10.27 11.80 12.18 7.91 17.42 19.26 21.26 17.69 17.21 17.32 29.78 43.00 42.37 39.02 22.55 7.11 5.73 16.56 21.58 16.87 27 E2_Ad KnownBoundary 0 52.53 26.05 23.21 17.78 16.21 2.56 9.54 29.20 24.59 35.08 31.27 23.41 33.76 39.97 44.63 74.08 49.28 31.79 24.19 20.26 36.14 37.35 42.60 28 ER2e ExonRegion 0 28.03 15.99 19.86 11.14 13.98 31.78 20.00 21.28 20.89 28.04 20.53 18.14 32.35 42.45 66.28 68.56 39.21 22.62 11.26 10.53 23.14 30.07 29.52 29 E2_Db KnownBoundary 1 31.19 11.77 13.69 6.89 7.81 12.78 22.88 14.21 17.13 19.42 7.79 0.00 42.21 23.78 70.21 76.73 26.09 11.03 4.52 0.00 3.15 17.94 20.06 30 E2_Dc KnownBoundary 0 24.82 12.17 5.17 9.29 17.32 26.75 17.40 12.45 3.99 15.98 22.37 12.15 19.64 41.32 60.33 7.78 35.44 7.25 0.00 3.00 2.35 5.33 7.77 31 E2c_E2e KnownJunction 0 17.56 0.00 2.51 1.43 8.57 0.00 3.80 3.86 7.75 8.00 8.00 0.00 20.29 19.37 38.94 4.36 12.16 6.80 0.00 0.00 5.00 5.69 20.23 32 ER2f ExonRegion 1 36.72 10.61 11.77 9.01 13.50 24.72 20.20 20.52 16.16 24.78 21.43 6.02 49.35 56.99 80.60 51.82 47.79 14.94 3.19 2.13 5.84 17.03 30.00 33 ER2g ExonRegion 1 36.57 13.80 18.07 18.48 41.17 25.96 20.43 18.58 10.36 17.74 21.57 25.73 36.46 35.56 46.23 43.30 30.81 11.53 10.32 7.35 16.05 19.23 21.05 34 E2_Ae KnownBoundary 1 46.67 37.62 23.24 21.58 60.87 24.99 30.21 16.39 7.18 16.33 31.22 50.87 67.69 32.14 58.22 43.92 25.15 13.97 4.80 3.26 8.71 19.96 28.26 35 ER2h ExonRegion 0 123.25 176.02 451.46 323.64 649.03 494.79 267.17 311.30 199.25 427.36 720.82 345.40 201.31 841.91 1280.85 647.23 668.62 200.08 182.43 213.15 341.78 290.12 241.26 36 E2_Dd KnownBoundary 1 42.16 17.50 20.87 29.33 65.53 39.47 14.79 25.30 17.33 42.12 16.85 30.16 49.83 56.98 48.09 54.52 21.69 6.34 16.28 8.37 16.06 15.31 20.15 37 E2d_E3a KnownJunction 0 19.19 11.58 15.76 4.89 0.00 10.90 12.54 8.50 5.44 18.51 18.48 12.00 0.00 15.48 26.08 30.68 12.25 0.00 0.00 5.43 17.92 11.57 20.91 38 E2d_E3b KnownJunction 0 52.97 404.73 445.58 290.64 568.51 650.76 421.22 300.83 167.48 446.71 583.78 317.80 160.22 923.31 1552.02 484.40 614.96 90.20 120.47 191.24 275.53 256.26 169.79 39 ER2i ExonRegion 0 38.82 18.02 19.03 23.59 32.99 25.79 26.52 19.79 13.00 28.19 23.32 20.51 21.96 38.63 46.66 60.52 30.35 18.22 20.71 18.33 24.58 20.17 33.13 40 E2_De NovelBoundary 1 179.59 123.53 41.04 55.54 149.75 91.25 114.43 79.11 31.37 53.13 71.12 83.88 112.33 74.34 93.83 130.31 102.01 42.82 123.02 96.00 102.67 121.55 153.57 41 I2 Intron 0 39.80 9.19 14.99 22.01 33.62 18.83 12.72 21.58 11.19 17.83 19.37 24.85 33.80 49.42 58.32 43.20 22.77 11.32 7.85 10.66 12.67 13.86 17.61 42 I2_SR1 SilentIntronRegion 0 23.14 8.23 16.05 15.04 27.81 19.27 9.91 15.77 7.41 17.20 11.98 19.06 22.70 42.49 51.32 35.34 15.80 12.76 8.21 8.21 13.10 13.01 12.39 43 I2_AR2 ActiveIntronRegion 0 72.54 13.26 17.99 43.87 52.23 26.12 23.11 41.95 23.92 27.33 34.36 46.10 70.92 68.80 75.52 58.49 40.90 12.12 9.02 15.05 12.80 19.00 30.22 44 I2_AR3 ActiveIntronRegion 1 46.11 8.83 13.81 10.68 31.99 12.52 7.16 9.78 3.01 9.55 22.13 12.80 11.04 57.84 72.59 59.76 19.31 11.34 8.73 14.71 17.84 13.53 17.56 45 E3_Aa NovelBoundary 0 53.94 17.96 30.45 37.06 39.90 7.33 19.39 51.63 27.98 38.52 24.48 25.36 26.78 50.39 74.66 89.72 34.13 17.33 20.89 42.63 25.82 14.57 35.43 46 ER3a ExonRegion 0 86.09 18.71 30.51 44.76 38.21 26.30 24.83 51.31 22.58 53.41 50.58 24.00 24.34 67.45 91.26 99.25 56.13 30.11 11.67 27.17 33.03 42.90 35.11 47 E3_Ab KnownBoundary 0 110.91 33.81 22.00 41.62 32.77 25.33 32.64 81.29 23.52 46.71 32.64 39.01 19.64 67.57 79.36 67.42 26.18 29.76 17.04 25.89 40.34 17.51 23.65 48 ER3b ExonRegion 0 381.97 476.10 469.17 358.13 262.58 300.25 231.03 351.81 215.61 466.87 630.52 390.24 178.41 1090.14 1602.16 565.07 740.96 112.24 180.58 233.67 352.00 416.42 207.59 49 E3_Da KnownBoundary 1 1066.11 641.20 572.45 443.80 249.75 169.85 88.99 396.69 252.43 450.85 896.91 450.00 153.56 1171.94 1554.24 440.40 1030.67 115.36 199.35 274.01 475.56 373.10 215.71 50 ER3c ExonRegion 0 384.99 146.99 258.38 190.72 133.09 70.02 58.06 246.82 151.84 288.93 488.87 258.27 87.33 608.98 880.08 381.33 456.00 76.24 97.30 136.28 188.78 287.10 125.71 51 ER3d ExonRegion 0 10.58 7.32 8.33 10.90 2.68 4.77 6.62 16.59 3.46 22.02 19.33 17.32 0.94 23.71 46.42 17.24 5.28 4.80 3.82 11.06 3.97 12.50 4.70