Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATAD3C Gene 0 4.94 3.18 22.86 8.20 7.06 5.25 5.21 7.74 12.03 4.85 2.27 4.12 4.45 9.99 7.26 4.77 4.29 2.54 4.91 4.49 2.87 3.21 6.34 2 378774 Transcript 0 0.00 0.00 12.25 6.13 0.00 0.46 0.00 3.46 5.56 1.15 0.48 0.00 0.00 8.53 2.90 0.00 1.65 0.00 3.98 0.00 1.10 0.00 0.00 3 378785 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 435474 Transcript 0 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 475091 Transcript 0 0.00 0.00 3.84 0.00 4.29 0.00 0.00 1.21 0.90 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 6 484537 Transcript 0 5.89 1.84 20.91 8.81 5.33 17.76 2.96 7.59 16.27 11.69 11.41 1.73 0.00 29.40 20.64 27.37 17.20 20.96 7.25 6.99 16.54 3.61 1.12 7 461946 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 1.72 0.00 19.67 6.78 10.27 6.77 5.97 16.00 8.50 6.63 1.26 2.57 3.15 3.48 1.59 3.39 1.61 0.90 1.56 0.69 1.44 6.18 8.15 9 E1_Ab KnownBoundary 0 0.00 0.00 18.45 14.35 14.26 14.54 14.88 5.09 4.86 7.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 19.21 10 ER1b ExonRegion 0 0.00 0.00 13.54 5.62 10.50 5.23 5.46 5.10 4.42 4.04 0.10 0.00 0.00 1.38 2.10 0.00 0.00 0.00 0.00 0.00 0.00 3.13 9.40 11 E1_Da KnownBoundary 0 0.00 0.00 7.33 1.93 0.00 0.00 0.00 3.94 1.59 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 3.41 12 E1a_E1c KnownJunction 0 0.00 0.00 7.69 0.00 8.57 0.00 0.00 2.42 1.79 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 13 ER1c ExonRegion 0 11.58 10.37 16.80 11.39 12.93 8.14 13.17 10.86 11.63 8.17 8.95 10.55 11.54 11.13 15.38 17.08 14.21 6.31 11.95 17.82 9.15 6.78 15.62 14 E1_Ac KnownBoundary 0 3.41 0.00 22.56 13.02 4.16 4.71 6.14 6.78 7.49 7.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 7.60 15 ER1d ExonRegion 0 0.47 0.29 29.97 8.44 7.82 0.64 4.93 8.51 9.54 5.78 2.56 2.36 0.00 6.56 0.00 3.94 4.37 0.00 0.00 0.00 0.00 3.25 5.76 16 E1b_E2a KnownJunction 0 3.48 2.76 31.28 11.32 10.95 0.00 5.30 8.71 7.90 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 3.67 17 ER2a ExonRegion 0 1.40 2.30 30.89 6.44 8.17 4.36 6.04 14.34 9.40 3.29 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 7.67 18 E2a_E3a KnownJunction 0 0.00 0.00 28.44 5.49 6.62 2.67 4.33 26.00 13.54 2.58 0.00 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.68 19 ER3a ExonRegion 0 0.00 0.12 31.54 3.13 1.57 4.56 2.55 15.53 9.69 2.83 0.00 1.79 2.81 0.56 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.04 20 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER4a ExonRegion 0 0.50 0.66 20.09 3.54 0.87 1.90 2.31 4.64 5.45 3.21 0.57 0.58 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E4a_E5a KnownJunction 0 3.33 0.00 22.53 1.93 0.00 0.00 0.00 9.00 6.63 4.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER5a ExonRegion 0 0.49 0.00 28.69 2.88 0.00 7.89 5.91 7.37 5.93 3.40 0.16 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 25 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER6a ExonRegion 0 0.00 0.93 46.99 11.66 2.44 5.57 3.74 4.89 8.60 3.75 0.00 1.43 0.00 1.29 0.00 0.13 1.36 0.00 0.00 0.89 0.00 6.31 3.85 27 E6_Da NovelBoundary 0 76.16 22.56 217.76 93.49 54.58 124.42 27.56 112.42 100.90 131.33 221.90 44.86 25.16 259.76 214.60 221.91 123.98 121.54 59.30 69.48 122.26 102.99 95.52 28 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER6b ExonRegion 0 0.00 0.00 51.29 9.64 0.00 3.67 2.65 3.46 9.18 2.87 0.00 0.00 0.00 3.94 0.00 2.97 1.18 0.00 0.00 0.61 0.00 2.53 0.00 30 ER7a ExonRegion 0 0.00 0.83 23.16 6.83 1.09 1.48 0.64 3.44 5.56 1.43 0.00 0.00 0.00 0.45 0.00 0.76 0.00 0.00 1.30 0.00 0.00 2.65 2.09 31 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER8a ExonRegion 0 0.00 0.00 32.12 7.13 3.24 3.53 1.48 5.15 3.11 4.65 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.31 0.00 0.00 7.37 0.73 33 E8a_E9a KnownJunction 0 0.00 0.00 46.10 7.19 15.20 7.61 4.06 10.51 9.32 6.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.45 0.00 34 ER9a ExonRegion 0 0.00 0.00 41.09 10.17 6.33 2.32 1.86 8.40 6.38 7.61 0.00 0.00 0.00 0.00 0.00 2.09 0.00 0.00 2.06 0.00 0.00 2.00 0.33 35 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E9a_E11a KnownJunction 0 0.00 0.00 37.49 12.72 7.30 9.20 2.25 13.68 4.08 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 37 ER10a ExonRegion 0 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E10_Da NovelBoundary 0 20.60 0.00 11.83 9.66 4.33 7.55 3.97 6.33 21.67 19.50 32.32 0.00 0.00 25.60 14.83 19.40 17.48 10.90 7.91 2.49 30.52 30.92 19.04 39 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER11a ExonRegion 0 0.64 0.00 32.28 11.53 2.25 5.16 2.83 11.77 8.45 6.42 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 2.67 3.15 41 E11_Da NovelBoundary 0 0.00 0.00 14.34 2.93 0.00 0.00 0.00 3.49 2.46 2.82 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 3.67 0.00 0.00 0.00 0.00 42 E11a_E12b KnownJunction 0 0.00 0.00 41.07 9.49 11.46 15.16 2.16 6.08 8.19 5.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.69 3.76 43 E12_Aa NovelBoundary 0 17.41 0.00 4.58 3.20 3.74 5.45 2.08 0.00 11.34 3.06 0.00 0.00 0.00 25.19 0.00 0.00 4.39 0.00 0.00 0.00 0.00 0.00 0.00 44 ER12a ExonRegion 0 5.89 1.84 20.91 8.81 5.33 17.76 2.96 7.59 16.27 11.69 11.41 1.73 0.00 29.40 20.64 27.37 17.20 20.96 7.25 6.99 16.54 3.61 1.12 45 E12_Ab KnownBoundary 0 0.00 0.00 7.98 4.96 0.00 0.00 4.42 0.00 14.12 0.00 0.00 0.00 0.00 11.83 0.00 0.00 0.00 0.00 0.00 5.69 0.00 0.00 0.00 46 ER12b ExonRegion 0 1.39 0.21 43.03 13.93 8.47 7.91 4.29 10.81 27.47 12.84 1.24 0.00 0.00 17.33 2.99 2.35 6.60 5.65 0.76 3.62 2.60 1.93 4.78 47 E12_Ac KnownBoundary 0 7.56 3.16 46.36 14.08 7.39 0.00 2.25 14.42 35.76 11.63 0.00 0.00 0.00 36.67 0.00 0.00 8.23 0.00 0.00 0.00 0.00 0.00 4.35 48 ER12c ExonRegion 0 1.08 0.00 46.27 17.15 1.50 1.83 0.90 10.83 28.32 8.31 0.42 0.00 0.00 30.58 4.60 0.00 5.23 0.00 8.39 0.00 1.93 0.00 1.43 49 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E12a_E13b KnownJunction 0 3.11 0.00 51.77 20.51 0.00 0.00 0.00 17.54 28.65 7.06 0.00 0.00 0.00 38.32 4.45 7.69 0.00 0.00 12.42 0.00 0.00 0.00 0.00 51 I12_SR2 SilentIntronRegion 0 0.61 0.50 13.28 2.94 0.88 1.21 0.27 2.87 5.47 2.40 0.40 0.29 0.00 1.48 1.86 1.23 0.68 1.48 1.05 0.62 1.09 0.95 1.21 52 ER13a ExonRegion 0 0.00 0.00 24.51 12.27 0.00 0.92 0.00 6.91 11.12 2.29 0.97 0.00 0.00 17.05 5.80 0.00 3.30 0.00 7.96 0.00 2.20 0.00 0.00 53 ER13b ExonRegion 0 4.96 0.36 50.14 15.64 5.39 2.25 2.43 12.46 29.70 9.70 0.80 0.00 0.00 22.49 10.82 0.00 4.37 4.72 12.21 5.08 1.14 3.72 8.80 54 E13_Da KnownBoundary 0 30.08 2.83 49.88 23.11 33.87 8.63 6.32 5.96 35.82 9.54 0.00 0.00 0.00 41.09 14.71 3.85 4.77 12.44 53.08 8.63 0.00 2.82 23.65 55 ER13c ExonRegion 0 4.19 2.13 22.76 9.62 5.88 2.41 2.48 6.75 18.76 4.27 0.98 3.56 3.42 14.99 5.46 2.09 2.09 1.65 3.55 3.70 1.16 2.01 3.19 56 E13_Db KnownBoundary 0 42.38 55.19 19.60 18.91 49.24 7.95 46.28 33.56 21.04 13.75 7.74 21.31 31.33 22.72 6.06 24.95 9.44 19.73 9.13 18.54 18.66 31.54 84.08 57 ER13d ExonRegion 0 7.30 4.13 14.09 5.01 7.99 5.65 4.90 2.99 10.03 1.28 0.75 6.19 7.29 12.50 10.55 2.32 2.62 1.43 5.42 2.33 2.33 1.80 5.58