Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf70 Gene 0 0.94 2.25 21.30 13.69 3.44 37.25 2.70 21.13 19.10 18.34 0.09 0.19 0.00 0.34 1.20 0.40 1.17 9.98 8.19 5.66 15.83 6.28 9.90 2 425828 Transcript 0 0.00 0.00 1.74 0.65 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 3 441484 Transcript 0 0.27 0.14 1.37 1.18 0.17 3.97 0.60 1.79 2.39 2.72 0.12 0.28 0.00 0.00 1.48 0.19 1.95 3.18 2.67 1.85 2.57 0.40 3.55 4 378733 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 6 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.73 8.94 0.00 5.87 0.00 3.59 7 E1a_E2b KnownJunction 0 0.00 0.00 3.34 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E2_Ac NovelBoundary 0 3.70 2.76 7.63 5.79 0.00 6.81 0.00 15.53 12.04 19.10 2.68 0.00 0.00 0.00 0.00 0.00 4.77 14.22 4.14 5.94 25.21 5.02 4.35 9 ER2a ExonRegion 0 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 2.20 3.70 0.00 1.77 0.37 0.00 2.94 10 ER2b ExonRegion 0 0.00 1.44 4.47 3.05 0.00 6.26 0.00 4.07 2.76 5.60 0.00 0.00 0.00 0.00 0.00 0.00 3.30 8.37 2.62 5.26 9.20 4.66 2.94 11 ER2c ExonRegion 0 1.94 2.92 15.27 13.15 0.00 76.60 2.62 15.30 16.70 20.26 0.00 0.00 0.00 2.64 0.00 0.00 3.99 10.47 11.88 18.44 21.21 21.01 25.94 12 E2a_E3a KnownJunction 0 2.82 5.85 29.45 26.94 3.74 102.55 9.32 30.97 33.39 38.12 0.00 0.00 0.00 0.00 0.00 0.00 4.77 11.61 17.13 16.49 34.41 24.49 10.59 13 E3_Aa NovelBoundary 0 3.04 5.85 23.30 5.96 4.24 9.60 0.00 8.63 9.03 7.01 0.00 0.00 0.00 0.00 5.19 3.93 0.00 2.57 0.00 0.00 8.40 0.00 0.00 14 ER3a ExonRegion 0 0.14 7.39 22.78 21.67 7.68 63.22 3.42 23.25 29.53 28.22 0.00 0.00 0.00 0.00 0.00 0.00 0.71 15.58 8.60 6.01 24.53 5.47 11.33 15 E3_Da NovelBoundary 0 3.56 0.00 7.24 0.00 4.33 2.16 0.00 11.50 11.40 14.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.86 0.00 2.36 18.66 0.00 0.00 16 E3a_E4a KnownJunction 0 0.00 5.59 36.22 20.38 12.05 61.73 4.28 24.85 20.43 24.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.99 4.80 0.00 33.17 6.12 15.28 17 I3_AR1 ActiveIntronRegion 0 0.19 1.08 10.06 2.85 3.16 12.43 1.13 13.07 15.05 11.21 1.54 0.63 0.15 0.45 3.98 1.70 1.75 13.16 6.19 6.30 6.35 4.21 4.61 18 ER4a ExonRegion 0 1.03 1.88 53.04 33.74 6.95 62.79 4.62 48.87 41.18 37.59 0.00 0.00 0.00 0.61 0.50 0.00 0.81 21.63 14.34 10.66 30.25 13.91 18.25 19 E4a_E5a KnownJunction 0 0.00 0.00 37.96 13.05 7.89 83.76 2.16 45.67 40.88 39.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.42 3.58 13.68 17.42 11.88 8.02 20 ER5a ExonRegion 0 1.79 3.49 30.22 15.81 4.42 50.38 3.79 30.38 23.61 24.35 0.00 0.00 0.00 0.45 0.35 0.99 0.56 10.96 8.92 5.99 19.68 7.41 11.09 21 E5_Da KnownBoundary 0 6.96 5.79 3.10 0.00 17.15 55.99 4.42 6.94 13.66 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 4.52 6.14 12.54 6.25 3.93 22 ER5b ExonRegion 0 0.00 2.65 4.12 0.00 6.57 26.12 1.08 7.23 10.85 5.70 0.00 0.00 0.00 0.00 0.00 0.27 0.00 8.01 2.99 2.77 8.08 2.97 1.69 23 E5_Db KnownBoundary 0 0.00 0.00 4.61 0.00 0.00 5.05 0.00 5.09 3.07 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.63 0.00 0.00 0.00 0.00 0.00 24 ER5c ExonRegion 0 0.54 0.27 2.34 2.36 0.35 7.94 1.20 3.58 4.77 4.11 0.25 0.56 0.00 0.00 2.95 0.38 1.70 2.67 5.33 1.92 4.78 0.81 4.17