Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NOL9 Gene 0 68.73 44.64 48.04 56.59 79.02 71.58 43.01 83.53 62.87 93.30 64.84 70.88 74.56 65.25 103.29 111.60 86.93 41.26 46.50 42.51 43.67 37.32 49.50 2 377705 Transcript 0 42.08 31.53 43.17 52.45 67.97 71.12 39.27 73.68 63.14 102.01 95.48 88.31 101.78 90.40 94.84 143.80 101.76 48.36 47.23 46.13 56.92 33.20 52.09 3 464665 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 4 460777 Transcript 0 8.69 5.72 5.72 12.46 11.99 6.61 12.17 17.81 11.76 13.35 18.85 18.38 40.35 20.49 31.01 27.51 25.01 9.74 8.23 16.52 4.68 6.80 10.20 5 464383 Transcript 0 10.69 13.45 6.91 12.14 15.94 4.91 7.45 12.05 8.38 13.48 8.01 11.00 10.60 9.69 9.04 19.69 21.56 3.75 8.73 6.56 9.14 6.03 5.84 6 462798 Transcript 0 18.52 11.61 6.18 12.85 17.55 9.18 14.05 17.60 16.04 19.24 24.43 21.91 25.76 10.23 13.64 19.56 28.97 10.00 10.20 7.39 9.96 10.84 10.92 7 ER1a ExonRegion 0 2.18 1.02 0.31 0.49 0.00 9.32 1.21 6.00 3.74 6.72 14.44 0.00 0.00 10.38 21.92 32.20 14.95 18.73 7.08 5.02 15.00 1.33 20.39 8 E1_Ab KnownBoundary 0 7.26 3.16 0.00 1.43 0.00 34.13 4.28 13.51 6.83 16.22 35.96 0.00 0.00 23.84 51.18 93.91 36.09 35.86 16.38 14.57 40.77 2.76 47.21 9 ER1b ExonRegion 0 3.45 4.91 7.48 4.40 3.93 10.07 4.61 14.25 15.71 31.00 29.40 3.33 4.21 34.42 36.27 68.75 41.53 40.37 33.70 13.27 40.13 7.52 33.72 10 E1a_E2a KnownJunction 0 6.96 15.66 22.21 11.25 11.29 16.81 25.66 23.45 33.10 47.65 53.54 19.06 35.71 65.98 54.64 46.74 69.19 16.71 4.80 27.55 18.84 5.69 15.37 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 51.62 30.81 39.73 36.65 23.29 50.13 26.68 48.09 53.64 87.93 90.94 50.06 47.05 93.17 93.02 102.58 116.07 54.52 40.22 49.93 77.41 32.00 50.06 13 E2_Ab KnownBoundary 0 75.94 52.69 61.85 76.11 26.49 58.38 39.44 82.07 71.56 127.03 135.51 82.23 137.33 76.58 94.57 116.89 119.96 56.50 97.51 63.60 72.59 48.74 60.01 14 ER2b ExonRegion 0 58.55 26.99 52.80 50.78 58.14 43.17 30.41 65.02 74.71 122.68 150.37 103.77 125.05 117.47 105.27 152.58 148.72 55.41 85.69 71.48 71.00 44.05 64.86 15 E2_Da NovelBoundary 0 7.19 6.51 12.15 13.09 37.86 13.74 26.06 6.94 3.94 8.92 0.00 0.00 0.00 2.47 0.00 4.02 0.00 1.91 8.09 6.14 0.00 0.00 11.52 16 E2a_E3a KnownJunction 0 16.30 12.50 42.84 54.34 69.95 33.96 46.15 79.11 82.38 152.74 149.51 97.53 116.23 149.10 134.50 115.53 166.25 42.24 53.55 53.12 77.53 52.60 107.64 17 I2_AR1 ActiveIntronRegion 0 15.50 4.37 6.91 9.02 9.29 10.73 4.90 1.10 3.35 5.77 0.73 0.00 1.90 1.71 7.92 1.61 6.82 1.27 1.72 4.74 3.04 0.00 3.17 18 E3_Aa NovelBoundary 0 12.37 6.31 7.63 8.62 19.69 7.04 30.38 13.27 3.01 5.78 0.00 0.00 0.00 2.30 5.69 0.00 0.00 2.53 0.00 2.62 2.90 2.39 0.00 19 ER3a ExonRegion 0 20.45 36.70 54.30 64.11 91.44 78.81 63.39 89.04 81.52 143.61 127.47 105.53 163.60 104.67 111.65 144.17 142.66 41.95 58.68 61.88 49.55 40.95 77.02 20 E3_Da KnownBoundary 1 17.41 0.00 16.14 36.86 4.33 20.10 16.52 38.20 36.52 48.35 12.27 19.21 101.94 28.31 66.14 76.82 43.29 4.06 12.99 11.44 8.46 23.33 26.97 21 E3a_E4a KnownJunction 0 13.93 40.45 12.89 30.67 59.42 98.13 59.18 55.57 46.53 102.59 104.18 125.59 108.60 100.30 43.76 173.03 112.11 23.21 57.51 52.73 41.51 28.78 53.35 22 E3a_E7a NovelJunction 0 0.00 3.22 2.93 3.83 3.65 0.00 6.09 4.23 6.31 7.68 2.63 13.05 13.64 2.47 0.00 3.16 7.67 9.16 12.71 0.00 0.00 10.72 4.35 23 ER3b ExonRegion 1 61.98 18.44 13.77 29.09 30.78 16.25 27.37 31.58 25.18 33.44 26.74 32.25 75.51 19.26 42.80 37.12 39.52 12.36 12.01 15.50 7.63 6.32 17.97 24 E3_Db KnownBoundary 1 12.37 5.39 5.14 13.82 8.66 10.90 11.08 27.64 18.11 18.29 10.06 26.56 54.05 9.12 41.54 36.83 21.69 15.92 20.24 12.02 11.31 0.00 16.48 25 ER3c ExonRegion 0 8.69 5.72 5.72 12.46 11.99 6.61 12.17 17.81 11.76 13.35 18.85 18.38 40.35 20.49 31.01 27.51 25.01 9.74 8.23 16.52 4.68 6.80 10.20 26 E3_Dc NovelBoundary 1 19.41 32.82 4.94 14.72 28.44 14.42 31.05 23.41 14.93 10.58 4.79 66.47 32.30 7.00 33.75 44.35 25.81 3.98 0.00 17.00 14.15 3.12 22.02 27 I3 Intron 0 14.88 6.66 4.72 9.66 15.98 8.34 9.31 14.02 10.99 10.39 11.85 20.44 16.47 9.87 17.39 23.72 16.91 5.63 6.06 9.33 7.68 4.96 10.40 28 I3_SR1 SilentIntronRegion 0 14.92 6.68 4.74 9.69 16.03 8.36 9.34 14.06 11.02 10.42 11.89 20.50 16.52 9.91 17.44 23.79 16.97 5.65 6.08 9.36 7.71 4.97 10.42 29 E4_Aa NovelBoundary 0 47.27 11.31 19.57 24.74 28.61 24.76 23.54 40.70 23.84 29.25 28.11 30.91 21.75 18.66 27.32 53.06 34.88 16.25 12.61 8.50 0.00 21.19 19.21 30 ER4a ExonRegion 0 41.47 38.68 34.54 45.80 94.63 58.07 45.54 77.30 64.48 99.58 123.11 148.38 168.70 105.76 94.61 178.48 162.50 40.92 59.07 53.85 58.98 49.42 46.66 31 E4a_E5b KnownJunction 0 46.08 25.78 23.71 30.43 99.24 68.94 40.32 78.08 50.49 112.26 114.40 85.08 161.84 87.53 75.04 129.79 146.70 31.46 47.81 38.48 82.04 48.86 30.73 32 E5_Aa NovelBoundary 0 10.59 23.75 13.01 10.49 12.73 10.90 6.54 12.98 5.90 4.24 12.48 0.00 20.13 4.83 10.75 35.55 32.35 5.26 0.00 3.07 2.59 9.19 12.04 33 ER5a ExonRegion 0 10.69 13.45 6.91 12.14 15.94 4.91 7.45 12.05 8.38 13.48 8.01 11.00 10.60 9.69 9.04 19.69 21.56 3.75 8.73 6.56 9.14 6.03 5.84 34 E5_Ab KnownBoundary 0 16.82 20.92 13.66 31.73 23.51 16.92 20.09 17.58 10.62 25.41 15.32 5.70 19.48 7.42 13.35 37.08 35.53 6.14 26.45 6.01 13.53 6.25 19.38 35 ER5b ExonRegion 0 57.37 37.24 49.32 51.19 84.56 69.93 59.45 93.35 74.93 125.75 155.46 130.79 153.94 108.17 80.54 140.06 171.61 32.72 51.03 62.92 59.06 54.41 49.28 36 E5a_E6a KnownJunction 0 78.16 70.12 58.93 60.37 92.02 118.40 72.12 106.50 82.41 158.19 154.78 120.94 198.04 116.25 109.52 136.03 163.25 35.77 57.98 72.87 49.30 55.36 26.55 37 E5a_E7a NovelJunction 0 3.63 0.00 0.00 0.00 7.13 5.68 1.85 0.00 1.56 3.95 5.05 13.95 13.64 2.47 0.00 4.36 4.49 1.87 0.00 0.00 0.00 5.39 0.00 38 E6_Aa NovelBoundary 0 22.00 9.74 10.20 30.63 47.03 7.89 14.04 10.02 21.41 16.41 2.68 0.00 20.45 2.47 19.78 20.08 11.50 6.09 0.00 5.31 5.93 10.23 10.33 39 ER6a ExonRegion 0 65.59 60.86 59.01 54.20 117.19 133.21 88.33 114.11 84.44 149.71 163.84 183.60 214.45 109.79 114.72 206.38 140.69 42.57 54.57 59.03 37.35 70.03 43.18 40 E6a_E7a KnownJunction 0 44.75 64.13 55.11 52.54 186.50 84.61 86.07 121.87 73.58 149.19 144.67 179.16 233.10 137.15 119.79 155.60 96.12 36.89 49.88 64.62 23.35 38.70 31.07 41 ER7a ExonRegion 1 46.45 45.10 56.52 76.85 106.23 74.25 59.62 130.79 91.81 168.01 132.93 248.37 279.92 154.83 143.03 223.07 138.93 59.35 86.12 62.97 53.01 85.83 85.01 42 E7_Ab KnownBoundary 1 84.39 38.94 56.24 118.77 111.29 68.71 69.69 189.15 123.00 217.47 140.19 301.15 250.80 219.73 219.05 266.17 166.71 73.04 139.39 77.15 56.34 173.90 133.17 43 ER7b ExonRegion 0 68.96 66.51 47.23 77.44 100.05 80.65 51.77 154.82 106.93 179.12 193.09 170.09 199.93 134.79 145.62 177.99 216.26 65.36 72.72 71.51 87.50 77.76 67.37 44 E7a_E8a KnownJunction 0 68.75 66.70 50.21 66.33 91.09 52.19 43.50 117.76 91.14 143.71 114.98 79.83 138.79 108.72 102.97 163.89 112.20 57.25 49.79 47.17 74.75 35.09 39.61 45 ER8a ExonRegion 0 66.41 77.58 73.00 94.49 106.05 111.68 67.52 131.76 124.68 184.03 180.99 210.24 208.20 152.83 142.14 237.26 183.73 89.94 75.19 74.59 104.66 89.50 104.23 46 E8_Da KnownBoundary 0 55.86 6.18 13.69 35.63 11.71 5.79 9.98 32.28 30.64 38.36 47.54 17.26 0.00 24.25 24.72 29.82 44.04 12.10 7.91 14.96 5.56 17.15 27.49 47 E8a_E9a KnownJunction 0 20.67 51.57 74.95 88.40 109.17 124.93 52.47 136.45 117.97 210.28 167.57 233.48 148.69 142.68 82.95 120.99 121.27 58.86 52.14 43.72 62.95 58.17 37.30 48 ER8b ExonRegion 0 18.52 11.61 6.18 12.85 17.55 9.18 14.05 17.60 16.04 19.24 24.43 21.91 25.76 10.23 13.64 19.56 28.97 10.00 10.20 7.39 9.96 10.84 10.92 49 E8_Db NovelBoundary 1 14.00 9.34 11.65 13.45 4.24 2.16 7.60 25.51 20.05 17.33 17.06 29.71 42.04 2.47 56.49 43.49 13.65 10.57 4.80 4.99 11.92 11.57 11.35 50 I8 Intron 0 9.42 3.48 3.75 2.09 10.99 4.39 4.53 8.82 11.34 13.45 13.89 12.76 7.93 8.08 5.49 15.26 14.69 5.34 7.63 4.37 6.79 7.13 8.04 51 I8_SR1 SilentIntronRegion 0 9.61 3.55 3.83 2.13 11.22 4.46 4.62 8.99 11.57 13.73 14.15 13.02 8.10 8.24 5.60 15.57 14.99 5.45 7.77 4.46 6.93 7.28 8.21 52 E9_Aa NovelBoundary 0 10.45 15.26 13.36 23.44 15.20 4.71 21.20 23.17 33.54 30.30 25.32 6.30 19.80 7.48 9.64 19.14 26.09 10.90 29.55 3.00 9.02 16.35 12.46 53 ER9a ExonRegion 0 96.51 69.19 90.84 99.86 152.90 152.21 57.07 142.59 115.75 190.72 207.25 225.64 178.94 149.86 165.34 301.58 164.81 108.82 100.10 60.07 91.49 97.02 150.60 54 E9_Da NovelBoundary 0 56.75 46.44 72.79 93.00 97.28 101.82 32.64 108.68 81.97 126.71 102.03 186.96 164.44 121.31 137.09 206.10 110.99 73.79 67.77 50.62 73.89 50.95 88.78 55 E9b_E10a KnownJunction 0 54.82 20.06 70.96 103.98 106.79 114.42 52.95 106.75 93.81 151.42 138.46 154.55 138.14 122.90 136.72 195.50 107.06 79.59 75.77 50.81 59.43 56.82 87.07 56 ER9b ExonRegion 0 46.72 23.20 67.80 90.00 88.89 103.92 37.02 102.81 86.00 141.49 126.50 163.24 153.38 115.43 116.69 193.96 113.58 77.40 63.47 50.67 67.50 53.32 77.11 57 ER10a ExonRegion 0 47.09 51.37 68.54 60.45 74.70 83.43 45.42 90.78 82.86 130.86 114.10 118.57 118.73 108.05 123.91 164.55 113.27 53.69 56.60 53.07 78.50 37.06 64.01 58 E10_Da NovelBoundary 0 3.78 0.00 9.73 5.09 11.12 2.44 8.35 25.34 18.29 15.47 0.00 0.00 6.33 0.00 13.35 28.62 9.07 12.68 4.80 3.26 2.90 11.27 8.71 59 E10a_E11a KnownJunction 0 58.01 40.39 53.16 52.91 93.72 100.74 44.07 104.90 78.36 161.82 106.45 83.73 139.76 100.65 121.76 133.64 97.34 54.68 35.95 51.07 86.61 14.39 49.94 60 E11_Aa NovelBoundary 0 0.00 6.38 11.38 10.02 0.00 15.33 11.48 2.55 24.13 14.40 4.11 0.00 6.49 2.35 13.60 8.54 0.00 8.50 0.00 2.49 2.72 5.63 4.35 61 ER11a ExonRegion 0 34.62 31.11 56.97 60.69 83.11 78.81 36.34 76.77 69.13 105.61 98.02 86.01 87.36 87.48 102.93 152.31 97.13 54.52 45.12 48.14 72.56 25.47 43.50 62 E11a_E12a KnownJunction 1 58.45 40.58 56.65 95.16 58.15 61.21 49.24 94.80 93.58 85.45 109.66 55.82 106.65 120.55 133.01 263.01 95.18 84.07 73.60 75.04 42.87 41.39 90.31 63 ER12a ExonRegion 0 85.09 50.84 53.77 63.33 90.38 80.69 46.84 92.57 65.05 92.74 47.45 57.91 57.25 57.00 114.97 103.57 77.86 39.18 47.01 43.28 38.66 37.02 48.63