Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PANK4 Gene 0 34.73 16.00 23.47 23.77 19.90 23.39 10.91 36.37 35.23 46.55 57.07 17.50 14.59 65.34 67.46 54.22 54.21 32.80 23.62 22.60 33.72 32.79 39.22 2 425477 Transcript 0 4.06 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 5.32 0.00 0.00 0.00 0.73 5.45 0.00 0.00 0.00 0.89 1.84 0.00 0.98 3 378466 Transcript 0 0.71 0.00 0.00 1.36 0.89 1.22 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 486396 Transcript 0 0.00 0.00 1.71 2.06 0.00 0.00 1.85 0.00 0.00 1.13 0.00 0.00 6.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 491212 Transcript 0 1.59 0.00 0.56 0.00 0.00 0.24 0.23 0.78 0.40 1.21 2.83 3.29 0.00 0.99 1.35 0.65 0.29 0.12 0.97 0.37 2.30 2.06 0.38 6 468002 Transcript 0 2.01 0.24 2.05 0.73 1.26 0.41 0.63 0.61 2.45 1.61 1.81 0.81 0.02 2.73 3.77 1.36 0.78 1.84 1.50 0.75 1.04 2.21 1.39 7 487804 Transcript 0 2.88 0.65 1.15 0.64 2.26 1.31 0.56 4.91 1.56 0.77 3.24 0.46 0.00 7.16 4.66 5.88 7.22 2.05 2.70 0.00 2.80 0.22 4.04 8 471361 Transcript 0 3.43 0.54 3.32 7.38 2.84 3.47 2.58 6.05 8.43 5.39 5.93 1.46 0.51 2.75 9.75 2.61 4.78 2.97 2.11 0.56 2.93 3.98 4.10 9 ER1a ExonRegion 0 4.06 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 5.32 0.00 0.00 0.00 0.73 5.45 0.00 0.00 0.00 0.89 1.84 0.00 0.98 10 E1_Ac KnownBoundary 1 262.57 15.79 11.97 6.73 18.25 53.72 41.03 26.08 21.09 32.56 94.39 0.00 12.17 40.97 170.72 61.69 75.08 39.59 45.18 31.70 50.72 38.03 84.85 11 ER1b ExonRegion 1 96.94 4.39 4.02 2.62 8.03 15.18 18.01 6.57 8.94 15.05 56.36 0.52 0.00 18.39 86.34 31.27 35.65 7.83 13.63 7.74 27.24 19.59 30.54 12 ER1c ExonRegion 0 169.32 10.13 23.56 24.42 19.09 28.05 21.20 40.30 37.10 53.83 107.04 16.81 8.11 51.43 90.36 125.07 109.11 49.26 84.77 19.07 60.12 69.04 128.84 13 E1a_E3a KnownJunction 0 31.71 2.43 15.55 10.95 0.00 4.32 0.00 33.85 14.29 29.36 39.75 6.30 21.75 23.84 18.54 7.43 17.39 8.58 0.00 8.44 37.87 11.57 4.18 14 E1a_E4a KnownJunction 0 0.00 0.00 1.71 2.06 0.00 0.00 1.85 0.00 0.00 1.13 0.00 0.00 6.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.22 0.00 1.11 0.00 0.00 0.48 0.46 1.56 0.80 1.22 0.45 0.88 0.00 1.97 2.71 1.29 0.57 0.24 1.94 0.74 1.45 1.00 0.77 16 E2a_E3a KnownJunction 0 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 5.21 5.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 3.12 0.00 17 ER3a ExonRegion 1 12.24 10.76 23.68 19.41 20.25 16.37 5.38 63.58 61.34 75.36 195.15 36.67 24.24 94.67 77.60 60.80 185.09 39.92 61.14 61.60 106.36 46.99 46.84 18 E3_Da NovelBoundary 0 3.63 0.00 3.28 0.00 0.00 0.00 0.00 6.78 4.89 2.12 5.21 0.00 0.00 29.08 35.48 17.35 13.65 2.53 12.99 14.38 5.50 21.49 23.82 19 E3a_E4a KnownJunction 0 18.08 17.23 39.21 53.24 31.24 31.74 14.49 99.52 93.37 114.54 148.35 43.21 13.96 258.99 269.61 184.91 202.24 125.44 190.69 114.73 87.85 165.39 171.07 20 E4_Aa NovelBoundary 0 7.26 5.26 3.58 7.13 0.00 23.45 4.11 8.30 5.38 5.29 9.48 12.15 0.00 9.71 20.77 11.36 24.78 11.36 13.27 0.00 2.59 3.06 0.00 21 ER4a ExonRegion 1 11.74 8.36 45.67 76.94 46.12 40.61 11.77 108.77 92.03 113.88 128.59 63.37 72.23 188.93 190.22 386.59 112.83 196.06 189.79 65.57 80.94 129.06 310.80 22 E4_Da KnownBoundary 1 31.34 17.96 54.49 93.96 83.45 43.10 5.83 117.76 101.91 117.33 120.82 59.87 66.72 132.67 130.91 488.68 93.60 231.14 212.52 63.09 108.85 119.59 393.35 23 ER4b ExonRegion 0 16.44 20.53 41.08 49.35 43.13 55.79 26.07 94.14 92.28 120.21 186.72 96.49 76.83 180.45 178.79 183.08 151.80 129.19 100.12 54.39 100.83 117.73 127.91 24 E4b_E5a KnownJunction 1 56.68 47.62 55.00 42.09 24.02 40.26 20.49 73.44 93.23 120.91 197.63 109.99 44.64 121.55 105.45 58.62 189.62 84.90 43.30 64.11 122.32 45.68 35.68 25 ER5a ExonRegion 0 208.45 34.50 40.06 47.97 46.58 50.11 20.13 85.72 103.96 125.73 187.54 94.92 71.55 193.01 174.28 161.42 153.49 98.40 55.95 60.95 94.05 112.49 106.26 26 E5a_E6a KnownJunction 1 49.71 11.91 31.52 32.60 7.64 44.75 19.61 41.94 53.76 80.75 57.65 123.94 67.04 90.47 101.74 93.48 60.50 37.06 31.53 32.53 23.04 39.62 50.53 27 ER6a ExonRegion 0 28.20 12.00 25.11 29.28 20.37 19.17 13.79 39.85 41.74 51.67 62.89 46.23 49.37 97.83 71.00 53.27 46.74 33.92 17.23 27.61 30.09 36.32 41.46 28 E6a_E7a KnownJunction 0 25.04 15.39 35.54 31.63 42.61 27.60 12.19 48.75 42.82 64.33 68.91 35.11 65.42 102.42 66.38 31.96 66.67 47.01 16.38 44.68 45.84 40.48 48.06 29 ER7a ExonRegion 0 16.64 23.58 31.66 21.09 19.01 26.53 14.74 42.00 37.83 55.80 51.00 21.56 18.88 101.00 77.32 65.44 73.54 29.28 13.67 28.76 40.43 35.77 33.16 30 E7a_E8a KnownJunction 1 33.71 21.44 51.92 27.87 26.15 36.97 19.43 59.97 46.12 73.71 90.50 0.00 6.66 108.25 86.16 56.48 66.11 32.04 3.76 21.67 62.46 33.68 38.24 31 E8_Ab NovelBoundary 0 61.49 21.18 38.53 31.96 71.39 81.32 49.06 65.55 53.53 73.33 87.23 24.76 12.50 143.74 82.58 71.86 61.06 43.86 36.52 56.12 67.03 36.50 71.36 32 ER8a ExonRegion 1 36.40 20.27 38.52 25.08 37.73 52.57 28.47 58.59 48.79 68.05 85.56 2.02 9.38 131.72 86.55 62.81 62.72 34.12 21.45 38.01 59.57 34.86 55.11 33 ER8b ExonRegion 0 29.54 24.11 30.19 29.77 21.23 42.84 15.83 50.92 54.68 58.33 70.24 14.61 12.32 96.50 78.84 59.41 81.18 43.72 19.29 38.55 54.49 45.20 41.60 34 E8_Da KnownBoundary 0 24.15 33.15 45.68 42.65 30.98 60.42 12.19 93.16 76.85 75.24 114.56 11.55 41.23 165.58 128.07 121.51 120.15 58.82 39.62 43.78 68.88 85.05 91.59 35 ER8c ExonRegion 0 37.13 21.74 32.92 33.11 41.15 36.23 18.21 73.30 64.39 73.14 98.99 18.24 29.14 132.11 123.66 87.41 99.24 59.76 33.05 47.72 70.55 59.16 57.96 36 E8b_E9a KnownJunction 0 38.60 33.94 38.20 35.43 60.27 56.62 21.46 60.63 60.71 77.79 79.86 18.46 50.65 127.97 96.67 69.30 83.40 74.16 26.26 58.80 56.96 54.99 62.14 37 ER9a ExonRegion 0 32.29 22.54 32.44 45.86 40.82 32.02 16.31 58.75 64.11 84.87 98.01 21.86 34.09 111.59 101.90 96.01 87.43 59.13 32.55 49.35 49.21 56.36 72.59 38 E9_Da NovelBoundary 0 0.00 0.00 1.42 1.47 0.00 0.00 0.00 6.20 6.42 6.34 5.21 0.00 0.00 9.71 18.67 20.51 8.04 0.00 0.00 0.00 6.30 2.94 8.71 39 E9a_E10a KnownJunction 0 26.60 42.76 28.24 46.85 28.52 32.48 28.18 51.88 59.84 95.66 124.14 12.30 36.69 113.84 103.71 89.81 79.48 50.08 34.92 65.45 58.81 61.42 53.35 40 E10_Aa NovelBoundary 1 3.11 3.35 2.51 3.23 0.00 0.00 1.77 6.57 6.05 4.11 7.74 6.30 0.00 4.83 38.82 7.35 0.00 4.44 0.00 2.75 0.00 0.00 11.44 41 ER10a ExonRegion 0 29.82 28.71 29.88 30.75 33.70 36.15 18.82 41.64 52.41 77.52 96.51 19.08 27.95 95.68 79.77 65.92 93.18 49.01 24.63 42.28 63.41 49.03 50.42 42 E10a_E11a KnownJunction 0 38.45 22.63 28.12 18.25 22.67 36.51 18.11 42.06 47.05 70.03 61.75 19.36 13.31 85.00 49.57 96.73 98.92 40.83 15.34 17.96 30.70 23.82 38.93 43 I10 Intron 0 6.78 2.11 6.54 6.79 4.92 5.23 2.93 7.47 8.06 14.66 14.02 2.11 3.10 20.35 18.31 10.78 11.98 5.26 2.93 4.01 8.05 7.61 9.00 44 I10_SR1 SilentIntronRegion 0 8.15 3.04 8.19 9.95 5.95 5.50 3.50 8.99 9.73 23.03 15.21 4.04 4.95 22.10 22.93 12.28 18.73 4.11 4.74 2.24 8.58 14.98 9.71 45 I10_AR1 ActiveIntronRegion 0 5.01 2.41 8.45 8.16 5.68 6.75 3.86 10.73 7.84 17.06 16.84 2.94 4.28 24.45 20.84 14.65 10.53 7.07 1.69 5.09 8.77 4.94 10.51 46 I10_SR2 SilentIntronRegion 0 6.92 1.44 4.54 3.83 3.53 3.95 2.22 4.45 8.02 8.27 10.59 0.74 0.99 17.12 12.54 5.87 9.02 4.55 2.57 4.07 7.01 5.03 6.06 47 I10_AR2 ActiveIntronRegion 1 15.74 3.80 5.49 3.38 12.10 7.14 0.00 6.69 4.65 10.40 18.82 0.00 0.41 13.10 15.14 14.73 8.11 5.78 2.91 0.74 5.99 10.24 10.15 48 I10_AR3 ActiveIntronRegion 0 5.82 0.00 2.82 6.00 0.54 3.67 0.00 8.64 6.61 9.35 7.15 0.00 4.69 22.98 11.61 14.12 8.75 5.08 3.19 8.40 21.27 0.42 24.23 49 I10_AR4 ActiveIntronRegion 1 5.57 0.74 4.22 7.11 3.87 4.76 2.39 4.54 4.46 11.01 16.71 0.00 3.29 16.33 25.14 13.83 11.52 5.60 3.50 6.22 7.35 6.71 13.48 50 E11_Aa NovelBoundary 0 19.56 0.00 8.63 4.76 7.56 5.05 6.54 4.31 11.63 5.64 17.11 0.00 0.00 16.36 28.18 14.36 7.48 6.80 0.00 17.83 15.63 6.18 3.84 51 ER11a ExonRegion 0 40.85 26.33 34.09 33.94 23.33 36.91 17.86 41.74 43.10 79.22 69.67 14.79 19.15 86.73 107.35 75.47 96.66 34.94 20.01 38.58 50.29 41.11 60.94 52 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E11a_E13a KnownJunction 0 79.20 49.73 36.19 52.21 39.39 42.36 31.44 51.10 59.03 96.97 63.49 12.60 33.11 93.35 112.12 51.95 105.00 52.44 29.46 35.92 35.52 20.64 32.35 54 ER12a ExonRegion 0 6.03 0.72 4.69 2.19 3.79 1.24 1.88 1.82 5.55 4.84 5.44 2.44 0.07 8.20 11.32 4.09 2.34 5.53 4.51 2.26 3.11 6.64 4.16 55 E12_Da NovelBoundary 0 0.00 0.00 2.84 5.19 0.00 0.00 4.11 6.98 5.03 6.02 9.63 0.00 8.28 15.19 19.66 11.88 4.58 3.94 0.00 2.94 14.39 2.82 3.24 56 E12a_E13a KnownJunction 0 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER13a ExonRegion 0 48.49 26.75 43.01 41.07 42.31 46.84 23.93 47.28 61.72 81.19 89.04 18.41 17.92 92.40 104.84 74.09 71.37 45.08 16.79 40.06 58.81 32.15 50.77 58 E13b_E14a KnownJunction 0 73.94 29.99 67.00 47.05 73.68 75.07 24.07 66.87 65.91 104.87 91.34 18.16 27.60 90.71 120.40 112.71 72.18 67.57 22.21 44.55 76.91 21.92 81.35 59 ER13b ExonRegion 0 61.38 23.39 53.92 44.98 46.83 75.19 21.18 68.27 72.87 103.22 76.35 17.32 14.07 90.14 113.15 92.14 75.92 51.74 15.93 37.23 73.82 37.50 66.07 60 ER14a ExonRegion 0 60.11 24.81 50.98 43.61 48.16 72.25 18.54 66.03 68.92 101.62 79.25 17.32 14.07 87.05 114.31 93.32 75.92 53.22 19.11 33.19 71.40 33.75 70.48 61 ER14b ExonRegion 1 53.91 24.23 54.09 46.12 42.52 52.30 18.36 75.78 57.60 88.27 99.28 9.75 14.24 101.99 126.47 62.88 77.35 56.12 23.53 46.27 54.22 32.91 65.17 62 E14a_E15a KnownJunction 1 64.53 46.24 66.50 63.63 53.90 52.81 35.99 86.54 73.26 79.40 101.34 5.40 0.00 121.37 123.37 38.88 73.12 61.68 25.13 61.94 64.25 55.60 67.10 63 E15_Ab NovelBoundary 1 73.94 33.02 53.99 43.38 41.68 26.01 22.30 62.72 72.28 77.36 82.65 0.00 12.99 100.07 91.48 47.59 76.30 56.04 56.38 26.78 58.19 46.90 63.51 64 ER15a ExonRegion 1 52.99 34.95 50.97 47.95 37.26 36.00 23.05 77.14 73.37 83.60 94.21 0.16 4.52 112.24 104.87 36.00 74.82 63.58 42.94 40.27 65.87 47.77 65.37 65 ER15b ExonRegion 1 41.62 42.33 40.06 27.30 40.01 39.17 16.52 55.16 42.91 63.87 73.65 5.58 3.56 107.87 90.73 60.99 83.79 37.52 18.83 25.12 47.05 40.00 45.22 66 E15_Da KnownBoundary 0 9.71 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.34 4.63 0.00 0.00 7.06 0.00 8.03 8.60 1.70 0.00 0.00 0.00 0.00 0.00 67 E15a_E16a KnownJunction 0 91.35 68.34 68.18 44.25 48.47 77.29 26.28 77.79 71.44 84.13 91.97 12.60 18.99 109.72 90.61 96.90 86.96 41.87 22.97 34.96 50.78 56.03 60.86 68 ER15c ExonRegion 0 2.88 0.65 1.15 0.64 2.26 1.31 0.56 4.91 1.56 0.77 3.24 0.46 0.00 7.16 4.66 5.88 7.22 2.05 2.70 0.00 2.80 0.22 4.04 69 E15_Db NovelBoundary 0 0.00 0.00 5.09 1.80 0.00 0.00 0.00 5.34 0.00 4.43 13.32 15.30 7.14 14.54 0.00 0.00 16.18 2.40 0.00 0.00 5.07 2.82 7.51 70 ER16a ExonRegion 0 90.33 61.59 57.13 52.71 84.38 90.41 28.63 64.32 84.23 91.96 92.30 22.19 10.47 122.82 103.72 102.96 92.25 52.83 47.44 38.41 42.34 67.71 73.52 71 E16a_E17a KnownJunction 0 96.98 80.78 54.70 75.58 102.80 89.10 34.14 60.87 89.29 94.58 100.60 50.72 15.10 131.14 151.68 85.62 98.92 62.35 79.25 50.81 42.81 83.52 114.47 72 ER17a ExonRegion 0 72.26 65.68 58.35 60.68 51.43 84.83 23.12 54.52 71.76 84.57 86.21 25.54 18.20 94.30 118.55 76.74 64.43 54.77 47.84 37.70 46.41 62.42 64.14 73 E17a_E18a KnownJunction 0 71.64 67.22 46.95 66.79 27.59 85.29 23.10 54.42 62.85 77.82 59.44 13.05 6.82 61.16 96.30 67.25 45.54 51.36 41.41 36.43 39.72 56.82 20.66 74 ER18a ExonRegion 0 75.99 45.57 58.27 72.93 43.65 54.98 27.08 73.90 80.16 103.14 84.22 31.83 9.38 112.57 126.72 84.63 76.11 55.26 42.23 40.53 55.43 73.16 53.61 75 E18_Da KnownBoundary 0 14.30 0.00 6.98 10.62 0.00 7.50 8.08 8.71 8.94 9.70 9.16 0.00 0.00 0.00 5.56 4.02 9.54 5.02 0.00 0.00 0.00 7.59 7.51 76 E18a_E19a KnownJunction 0 120.98 54.66 68.33 90.96 58.06 60.99 15.46 94.55 75.06 103.23 100.66 38.26 13.47 122.61 141.29 121.85 110.61 70.97 49.32 50.49 48.19 76.66 93.98 77 ER18b ExonRegion 0 3.43 0.54 3.32 7.38 2.84 3.47 2.58 6.05 8.43 5.39 5.93 1.46 0.51 2.75 9.75 2.61 4.78 2.97 2.11 0.56 2.93 3.98 4.10 78 E18_Db NovelBoundary 0 17.41 0.00 7.89 14.38 11.80 0.00 0.00 16.80 10.27 15.93 12.21 0.00 0.00 9.18 4.45 0.00 4.58 4.44 17.32 0.00 0.00 8.94 3.59 79 ER19a ExonRegion 0 60.56 57.12 51.27 53.22 35.29 53.91 15.14 77.99 62.28 76.38 76.15 26.02 10.26 111.65 134.61 78.16 74.42 49.96 36.65 45.99 37.22 52.87 46.17 80 E19a_E20a KnownJunction 0 80.24 74.72 52.51 48.91 66.72 77.06 22.96 76.89 76.19 72.47 78.81 17.71 12.82 89.23 110.39 53.75 94.90 36.23 36.61 48.70 55.72 43.66 18.10 81 ER20a ExonRegion 1 53.59 30.92 41.01 36.96 33.58 39.33 17.92 56.09 49.85 57.06 67.01 4.39 8.56 102.32 145.69 53.37 62.43 30.18 26.22 37.10 50.78 47.92 21.28 82 E20a_E21a KnownJunction 0 33.04 22.89 53.72 44.82 59.76 31.74 24.07 70.32 51.97 57.86 69.28 12.60 8.28 123.37 134.12 59.30 59.56 61.14 13.74 32.60 25.08 36.13 33.80 83 I20 Intron 0 9.79 2.45 2.69 4.76 3.95 3.56 3.19 6.04 4.69 8.25 14.25 1.88 2.81 14.25 16.55 12.95 9.07 6.46 2.99 6.42 3.54 6.28 5.90 84 I20_SR1 SilentIntronRegion 1 9.88 2.49 2.77 4.96 4.15 3.71 3.32 6.22 4.86 8.52 14.90 1.98 2.91 14.43 17.29 12.99 9.47 6.80 3.15 6.75 3.73 6.54 6.09 85 I20_AR1 ActiveIntronRegion 0 8.52 1.92 1.23 1.17 0.00 0.87 0.81 2.88 1.48 3.25 1.93 0.00 1.04 11.41 2.58 12.88 1.47 0.00 0.00 0.00 0.00 1.56 2.53 86 ER21a ExonRegion 0 25.96 12.88 29.08 26.30 13.12 13.72 8.62 35.96 24.92 41.16 35.58 5.59 4.49 51.77 63.79 36.06 37.11 21.80 11.88 13.66 19.80 15.31 18.72 87 ER21b ExonRegion 0 0.71 0.00 0.00 1.36 0.89 1.22 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00