Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PGD Gene 0 176.87 262.32 346.14 211.42 299.62 346.48 397.53 347.73 261.54 335.65 1162.37 249.20 427.00 676.05 886.25 690.69 693.48 290.71 375.91 255.91 439.15 439.27 314.44 2 491493 Transcript 0 0.00 0.00 1.46 0.00 0.43 0.29 0.63 0.00 2.64 1.09 0.00 0.00 0.00 0.00 1.36 0.47 0.53 1.76 1.02 1.70 1.09 0.00 0.00 3 487775 Transcript 0 1.43 1.36 3.13 0.34 3.14 1.63 5.17 1.85 3.10 2.09 4.98 2.15 2.98 2.94 4.48 6.48 11.08 8.97 2.67 4.18 5.38 2.19 3.70 4 490057 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 377062 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 477958 Transcript 0 2.69 1.81 7.84 2.93 1.93 1.83 17.21 3.65 6.89 5.57 23.52 3.73 5.21 5.73 7.09 5.12 10.27 4.88 1.33 5.08 8.63 6.30 1.47 7 270776 Transcript 0 2.12 2.03 3.68 2.73 5.35 1.83 2.65 1.73 2.47 2.29 9.66 0.00 9.38 12.99 11.61 0.00 3.30 3.70 3.19 2.13 2.20 0.00 2.94 8 483936 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 465632 Transcript 0 2.60 8.80 4.78 0.82 6.55 14.32 16.61 1.62 6.54 5.91 9.39 0.03 0.21 4.45 5.82 7.57 7.90 4.80 10.74 8.98 10.77 7.94 7.19 10 460189 Transcript 1 3.56 5.99 3.13 2.06 0.00 8.29 36.88 4.27 4.28 4.73 49.12 0.00 0.00 14.42 5.81 4.27 17.77 14.05 13.18 5.62 8.65 17.64 14.17 11 493288 Transcript 0 4.87 3.04 11.85 9.39 12.54 10.81 19.96 11.09 11.29 12.54 26.95 8.39 14.89 14.26 19.14 19.34 19.94 20.16 10.64 8.12 23.04 24.49 12.09 12 498356 Transcript 0 2.67 2.05 2.31 0.51 12.84 3.70 9.03 3.25 2.32 1.73 5.86 8.10 9.61 7.38 2.89 6.00 3.40 3.27 0.00 3.22 1.67 3.68 4.45 13 496718 Transcript 0 27.93 32.47 37.36 23.36 36.75 44.95 50.63 34.68 26.16 30.69 112.30 22.22 45.00 63.14 81.21 85.25 72.00 25.89 41.04 24.03 41.90 46.24 37.23 14 IG32 Intergenic 0 8.90 33.35 29.86 23.74 54.75 36.01 67.01 50.98 76.20 27.32 1.95 3.43 3.80 1.50 3.01 3.36 2.17 20.38 16.55 21.36 3.67 3.79 6.01 15 IG32_SR1 SilentIntergenicRegion 0 4.52 15.91 16.29 14.36 36.01 21.87 45.85 27.79 41.20 14.82 1.12 3.41 2.96 0.87 2.28 3.09 1.43 16.21 14.96 16.81 2.05 2.08 4.58 16 IG32_AR1 ActiveIntergenicRegion 0 15.87 69.26 49.19 37.64 81.82 45.11 102.33 80.29 124.75 56.35 4.35 3.69 5.49 2.28 3.81 4.97 4.71 29.47 18.47 32.27 8.03 6.56 10.39 17 IG32_SR2 SilentIntergenicRegion 0 11.50 40.52 39.59 30.93 70.16 50.94 83.36 69.14 101.08 31.61 2.02 4.03 4.60 1.68 3.66 3.50 1.98 23.69 19.69 24.52 3.90 4.60 6.59 18 ER1a ExonRegion 0 0.00 0.00 2.91 0.00 0.85 0.58 1.27 0.00 5.29 2.18 0.00 0.00 0.00 0.00 2.72 0.95 1.05 3.51 2.03 3.39 2.18 0.00 0.00 19 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER2a ExonRegion 0 21.82 18.93 3.35 2.83 11.63 48.81 50.87 5.92 7.41 10.94 48.47 0.00 0.00 82.08 53.67 64.70 33.26 10.59 23.77 17.43 43.82 27.97 31.96 21 E2_Ad KnownBoundary 0 62.38 162.54 26.79 9.72 75.13 219.65 238.66 25.38 23.29 36.51 101.45 6.15 0.00 138.27 133.14 125.27 100.42 56.00 115.02 37.97 101.62 85.54 71.36 22 ER2b ExonRegion 0 55.56 90.49 17.77 7.16 39.47 161.37 156.56 17.28 15.13 24.08 100.51 4.33 0.00 182.71 141.44 133.00 97.38 36.03 88.39 35.64 99.72 59.90 64.61 23 ER2c ExonRegion 0 89.80 168.79 31.16 8.18 79.13 256.99 243.23 27.90 19.94 30.15 160.43 4.33 6.70 249.65 191.07 194.46 138.64 62.56 141.98 57.14 145.76 100.01 106.14 24 ER2d ExonRegion 1 276.87 538.71 105.27 61.03 402.62 919.25 1048.37 96.31 83.79 127.09 664.86 8.39 17.44 597.17 677.17 647.92 601.18 140.95 336.06 281.65 368.16 278.61 353.96 25 E2a_E3b KnownJunction 1 446.23 935.23 233.79 163.15 988.88 1754.50 2114.55 225.41 210.18 312.62 1340.44 22.21 51.46 543.00 955.93 1101.85 1009.63 421.25 478.88 589.51 551.18 387.61 545.38 26 ER2e ExonRegion 1 360.30 778.55 175.04 106.41 667.91 1422.46 1599.85 165.40 154.67 241.82 1130.45 5.99 27.06 675.26 871.49 872.89 899.88 177.95 442.03 488.21 532.45 367.50 484.09 27 ER3a ExonRegion 0 2.60 8.80 4.78 0.82 6.55 14.32 16.61 1.62 6.54 5.91 9.39 0.03 0.21 4.45 5.82 7.57 7.90 4.80 10.74 8.98 10.77 7.94 7.19 28 E3_Ab KnownBoundary 0 0.00 0.00 1.54 0.00 4.33 0.00 3.89 0.00 4.17 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.38 3.07 8.59 0.00 0.00 29 E3_Ac KnownBoundary 0 0.00 0.00 4.29 0.00 0.00 0.00 7.68 1.93 0.00 1.40 2.32 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 6.26 0.00 2.39 3.76 30 ER3b ExonRegion 1 330.18 708.36 191.57 108.12 659.13 1357.01 1566.25 180.91 179.50 258.82 1107.55 4.33 26.58 474.24 678.89 827.24 871.44 180.46 374.81 504.25 503.91 338.92 451.26 31 ER3c ExonRegion 1 107.40 277.77 174.25 89.40 298.05 560.96 609.99 171.56 160.69 231.11 548.88 44.10 70.83 167.72 253.88 271.62 350.96 109.05 128.98 214.14 238.64 129.11 148.08 32 E3_Da KnownBoundary 0 27.71 35.45 70.96 23.71 62.14 85.80 64.30 78.86 56.94 74.33 167.25 42.46 104.54 81.99 77.14 80.66 99.30 35.86 22.78 36.43 86.30 63.50 28.77 33 E3a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E3_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 14.48 1.77 0.00 1.62 0.00 5.21 6.30 6.82 0.00 0.00 0.00 0.00 5.14 0.00 3.00 3.15 0.00 4.27 35 E3b_E4a KnownJunction 0 3.26 0.00 4.79 1.40 0.00 0.00 12.50 0.00 4.66 1.26 4.95 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 2.94 0.00 2.76 0.00 36 E3b_E4b KnownJunction 1 43.64 60.98 105.35 34.63 96.18 77.23 113.72 119.44 78.47 140.27 506.92 139.40 89.77 183.65 191.61 120.91 303.41 45.27 64.10 100.03 251.50 126.81 49.94 37 E3b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER3d ExonRegion 1 33.38 50.53 109.15 37.01 74.92 97.76 101.95 126.44 98.05 135.86 483.37 122.89 121.58 167.03 174.97 110.88 264.07 55.15 53.91 89.69 231.05 110.11 51.96 39 ER3e ExonRegion 0 1.43 1.36 3.13 0.34 3.14 1.63 5.17 1.85 3.10 2.09 4.98 2.15 2.98 2.94 4.48 6.48 11.08 8.97 2.67 4.18 5.38 2.19 3.70 40 ER4a ExonRegion 0 2.12 3.62 10.89 4.47 3.86 3.67 21.92 7.30 9.13 9.88 42.09 7.46 10.42 11.46 14.18 10.24 20.54 7.39 2.65 7.21 17.26 9.84 2.94 41 ER4b ExonRegion 0 39.84 93.98 282.95 167.57 228.51 241.66 248.30 292.07 261.68 351.56 1365.41 225.88 242.26 711.66 867.15 728.65 777.52 334.45 375.91 358.02 533.86 459.40 351.90 42 E4a_E5a KnownJunction 0 30.30 267.85 375.27 204.80 1052.55 1454.22 1322.58 384.99 316.63 381.92 1578.66 409.18 676.74 878.57 957.17 825.00 744.18 312.31 367.54 341.70 521.40 546.26 289.89 43 E4a_E6a KnownJunction 0 3.56 5.99 3.13 2.06 0.00 8.29 36.88 4.27 4.28 4.73 49.12 0.00 0.00 14.42 5.81 4.27 17.77 14.05 13.18 5.62 8.65 17.64 14.17 44 ER5a ExonRegion 0 75.91 468.15 412.69 217.59 740.65 1315.89 1366.19 417.74 350.94 436.35 1917.44 381.71 603.88 929.59 939.70 828.10 991.12 368.26 443.88 366.25 728.49 579.12 332.78 45 E5a_E6a KnownJunction 0 167.14 763.42 470.21 245.36 368.59 685.91 889.57 468.33 385.73 503.20 1904.64 342.41 531.46 1041.09 1211.57 857.13 1074.05 419.30 470.88 388.49 836.16 636.83 402.15 46 ER6a ExonRegion 0 245.40 451.60 465.05 240.32 307.23 386.46 436.62 448.27 390.97 524.41 1846.75 438.28 590.11 1159.91 1274.32 1009.51 1081.46 509.91 544.21 393.37 739.23 672.34 440.44 47 E6_Da NovelBoundary 0 94.02 135.70 214.39 112.71 83.19 103.58 99.37 217.28 190.48 234.10 547.93 127.84 204.37 364.59 361.46 495.00 438.90 246.77 223.72 183.38 295.60 291.17 150.41 48 E6a_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E6c_E7a KnownJunction 0 305.61 290.94 485.05 254.68 406.20 429.75 384.48 517.00 456.77 506.94 1941.23 351.26 689.73 1159.17 1553.00 1159.78 1118.37 594.69 641.15 477.08 858.64 762.66 496.64 50 ER6b ExonRegion 0 226.47 274.53 472.07 248.05 322.43 376.39 317.09 506.00 435.38 495.75 1888.93 385.32 695.30 1156.37 1396.95 1169.53 1135.51 615.76 617.96 452.13 823.09 695.90 477.94 51 ER6c ExonRegion 0 215.18 274.53 465.64 243.96 322.87 354.53 313.78 504.71 427.76 502.73 1949.01 359.35 739.46 1137.97 1365.52 1210.65 1143.21 613.45 620.08 446.81 821.25 688.26 479.65 52 ER7a ExonRegion 0 197.71 260.56 494.40 270.28 354.84 403.15 385.25 526.02 431.43 517.43 2147.86 444.76 659.62 1284.93 1295.20 1179.17 1330.92 635.63 755.70 450.55 917.97 701.67 549.15 53 E7a_E8a KnownJunction 0 255.75 290.67 607.37 389.69 308.91 346.22 524.43 615.62 511.63 610.95 2240.36 462.45 719.92 1295.32 1523.83 1177.98 1363.16 652.64 762.00 477.01 871.18 709.76 581.66 54 E8_Ab NovelBoundary 0 232.19 280.34 434.49 292.70 233.79 347.30 363.59 418.38 424.24 454.13 1700.27 350.36 962.92 1049.15 1163.49 988.37 1054.60 518.58 465.52 393.73 589.97 487.60 435.10 55 ER8a ExonRegion 0 223.75 290.32 531.17 347.47 277.51 360.30 435.33 544.30 494.34 565.81 2330.80 446.14 948.73 1326.36 1437.50 1180.64 1376.79 672.58 683.94 466.16 855.14 670.10 563.28 56 ER8b ExonRegion 0 206.16 287.93 593.80 363.40 401.08 484.11 541.87 575.36 514.13 620.73 2323.06 416.39 880.66 1255.71 1528.02 1333.73 1357.16 688.12 777.98 513.17 898.24 704.63 609.66 57 E8a_E9b KnownJunction 0 231.82 341.32 634.37 388.83 530.31 612.20 609.93 639.52 568.17 695.38 2359.44 449.55 795.24 1270.89 1631.75 1289.75 1482.37 657.49 659.12 636.62 850.12 778.77 527.20 58 ER9a ExonRegion 0 4.87 3.04 11.85 9.39 12.54 10.81 19.96 11.09 11.29 12.54 26.95 8.39 14.89 14.26 19.14 19.34 19.94 20.16 10.64 8.12 23.04 24.49 12.09 59 E9_Ab KnownBoundary 0 14.97 0.00 19.81 11.25 26.91 16.18 17.36 9.73 11.98 19.05 32.64 6.30 19.97 9.71 19.53 18.80 8.79 27.11 8.56 17.58 27.43 13.90 11.69 60 ER9b ExonRegion 0 194.37 332.76 597.29 371.56 377.30 515.59 571.98 587.25 474.43 623.41 1938.02 399.07 803.71 1255.17 1392.65 1112.24 1166.76 443.61 683.36 501.97 753.20 682.52 494.73 61 E9_Ac KnownBoundary 0 276.05 415.98 716.56 480.86 350.68 705.28 689.29 602.52 496.61 695.83 1630.20 353.07 732.91 1242.34 1588.85 1045.02 1025.81 421.17 641.62 528.15 634.64 709.45 485.03 62 ER9c ExonRegion 0 145.54 339.22 488.90 329.93 431.77 692.39 636.22 513.32 412.31 558.49 1649.68 391.78 780.78 1110.64 1294.05 947.54 1088.04 392.10 468.75 411.85 617.25 688.55 416.68 63 E9a_E11a KnownJunction 0 180.77 429.46 474.05 282.71 792.53 840.43 835.74 502.87 416.58 524.91 2023.62 431.84 933.87 1260.88 1337.54 1139.62 1159.14 533.75 599.64 378.01 732.62 748.89 450.80 64 ER10a ExonRegion 0 5.34 4.11 4.61 1.03 25.67 7.41 18.05 6.50 4.65 3.45 11.71 16.20 19.22 14.76 5.77 12.01 6.80 6.53 0.00 6.45 3.34 7.36 8.90 65 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER11a ExonRegion 0 254.35 430.85 474.59 270.27 701.45 692.50 743.66 503.77 439.41 535.60 2010.55 412.33 871.33 1211.63 1134.45 1257.98 1217.31 504.56 652.65 381.31 744.37 789.29 530.38 67 E11_Da KnownBoundary 0 327.02 381.31 344.96 177.93 669.10 553.15 739.15 352.05 312.00 359.28 1523.60 240.53 546.56 757.91 814.89 1020.16 1046.66 302.73 654.23 286.99 557.11 630.95 443.97 68 E11_Db KnownBoundary 0 299.31 416.70 349.07 274.79 543.38 423.85 590.46 419.28 299.51 404.30 1445.47 410.23 768.13 875.10 1009.46 1157.05 909.58 323.75 640.39 255.16 514.73 710.80 433.39 69 ER11b ExonRegion 0 352.58 524.49 555.81 346.40 748.32 665.06 819.53 611.44 488.69 615.12 2196.26 549.12 1285.85 1422.86 1500.43 1558.38 1396.28 547.86 907.83 378.01 776.26 969.36 652.18 70 ER11c ExonRegion 0 387.41 573.64 704.91 420.89 585.44 591.81 800.94 734.50 551.71 721.48 2498.34 604.64 1117.00 1678.38 1889.47 1711.90 1493.09 630.87 982.14 481.64 848.97 977.23 787.42 71 E11c_E12a KnownJunction 0 491.57 681.33 863.72 464.81 515.87 615.33 877.47 800.90 556.19 755.04 2784.86 490.36 706.28 1507.51 1794.06 1418.77 1829.08 576.99 1091.98 513.96 955.45 1001.11 629.13 72 ER12a ExonRegion 0 393.96 495.69 603.73 336.73 478.66 620.25 657.73 608.92 453.56 591.32 2110.90 567.71 798.11 1127.83 1314.44 1175.34 1336.59 454.12 671.80 378.67 811.24 810.30 497.56 73 E12a_E13b KnownJunction 0 878.45 857.48 973.77 589.90 901.44 1254.85 1218.10 941.46 633.70 821.65 2667.25 629.91 1098.95 1591.16 1972.69 1894.63 1710.98 564.97 1183.09 537.74 973.86 1118.31 940.79 74 ER13a ExonRegion 0 50.09 52.06 57.10 34.62 57.62 81.67 81.56 56.81 38.54 49.93 191.87 39.83 80.67 104.49 123.59 138.10 121.03 38.06 72.20 39.43 69.20 77.92 62.45 75 ER13b ExonRegion 0 482.63 650.97 753.53 461.78 829.21 943.55 1038.83 768.25 501.74 639.83 2238.02 601.58 1106.80 1493.21 1813.11 1593.63 1433.59 553.04 856.19 485.26 898.00 910.62 742.76 76 E13a_E14a KnownJunction 0 312.94 525.89 735.72 436.14 498.05 649.91 739.81 652.83 426.15 551.48 1379.03 478.36 608.73 902.82 1332.84 960.86 911.92 529.40 393.61 370.40 554.45 582.39 433.73 77 ER14a ExonRegion 0 280.28 514.97 719.41 441.72 526.69 575.08 714.50 638.57 468.71 610.35 2004.37 406.41 700.87 1092.04 1701.20 1358.00 1179.33 587.12 762.67 424.73 708.79 909.41 600.53 78 E14_Da KnownBoundary 0 0.00 18.48 3.08 2.00 7.89 0.00 17.97 9.00 6.13 2.82 2.68 0.00 0.00 5.30 4.45 15.81 0.00 5.55 14.21 0.00 2.59 6.25 3.16 79 E14a_E14b KnownJunction 0 557.73 738.55 931.63 502.67 774.70 728.90 934.31 806.57 558.30 720.25 2395.45 452.70 881.76 1477.32 2297.80 1409.20 1322.02 600.12 821.29 559.02 897.01 1073.91 679.58 80 ER14b ExonRegion 0 5.77 12.87 17.63 12.10 15.88 8.24 19.70 12.56 13.78 11.44 32.73 4.61 9.33 21.79 38.83 32.40 22.96 13.73 9.87 8.63 14.60 14.56 12.00 81 E14_Ab KnownBoundary 0 0.00 5.79 15.52 10.72 7.98 10.56 13.91 9.69 9.92 3.84 14.00 0.00 0.00 2.47 11.37 10.34 25.90 6.84 0.00 6.46 0.00 5.02 16.30 82 ER14c ExonRegion 0 517.54 612.52 858.70 527.48 559.73 575.11 697.17 802.42 543.98 717.63 2323.79 421.32 714.78 1198.34 1959.45 1391.82 1297.77 628.21 678.14 468.71 800.78 910.78 615.44 83 E14_Db KnownBoundary 0 615.37 582.86 636.64 376.58 628.44 711.18 853.49 601.90 385.88 597.54 2165.02 261.54 583.24 909.12 2242.17 1130.64 1064.61 401.48 546.56 457.71 696.85 859.90 496.47 84 E14_Dc KnownBoundary 0 277.68 344.94 506.13 315.28 539.56 404.71 568.29 634.31 375.89 442.87 1533.13 307.75 512.47 893.52 1729.41 904.63 1003.65 215.89 372.25 376.15 515.16 616.25 402.74 85 ER14d ExonRegion 0 418.88 495.55 740.90 453.47 590.61 580.98 733.84 836.65 510.10 706.65 2235.40 313.10 602.03 995.88 2121.21 1219.38 1226.13 410.54 529.06 483.17 742.35 894.21 548.48 86 ER14e ExonRegion 0 321.60 389.68 493.89 347.38 480.92 347.84 472.59 549.39 343.11 423.05 1379.18 356.83 637.83 861.26 1500.67 814.52 801.90 281.02 424.94 298.81 482.97 580.03 393.65 87 ER14f ExonRegion 0 2.12 2.03 3.68 2.73 5.35 1.83 2.65 1.73 2.47 2.29 9.66 0.00 9.38 12.99 11.61 0.00 3.30 3.70 3.19 2.13 2.20 0.00 2.94 88 IG33_AR1 ActiveIntergenicRegion 0 95.95 46.08 16.94 24.39 207.44 54.00 132.92 21.33 12.04 13.75 74.89 55.80 50.13 76.08 152.84 49.27 58.04 5.63 47.62 26.86 26.46 59.98 44.60