Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXO6 Gene 0 26.25 10.70 11.78 12.71 17.26 20.67 16.61 23.75 32.16 16.04 31.31 27.49 24.17 123.32 169.35 121.22 47.71 5.80 5.64 8.49 16.23 16.62 18.21 2 376749 Transcript 0 1.12 1.97 0.04 0.00 0.00 1.03 0.91 1.78 2.97 0.00 0.00 0.00 0.00 3.50 2.18 2.69 1.65 0.00 0.00 0.00 0.00 0.00 0.09 3 376753 Transcript 0 16.15 4.24 11.09 8.77 8.02 5.25 7.15 21.44 35.71 14.28 39.33 22.81 23.13 87.49 180.48 113.39 69.28 0.87 0.00 4.89 12.91 8.51 11.14 4 474239 Transcript 0 0.15 0.00 0.71 1.25 1.78 2.30 1.85 1.54 3.17 1.98 2.35 0.24 0.26 5.41 7.43 8.19 3.66 1.40 0.22 0.78 0.32 2.41 1.74 5 449067 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 1.12 1.97 0.04 0.00 0.00 1.03 0.91 1.78 2.97 0.00 0.00 0.00 0.00 3.50 2.18 2.69 1.65 0.00 0.00 0.00 0.00 0.00 0.09 7 ER1b ExonRegion 0 15.93 1.63 2.24 2.05 5.29 5.22 4.50 5.59 9.05 0.90 14.15 1.39 1.65 34.84 35.75 65.21 21.87 0.00 0.00 0.00 8.98 2.10 8.25 8 E1a_E3a KnownJunction 0 69.57 6.45 5.44 3.33 8.66 18.74 11.88 18.11 16.90 1.45 35.59 0.00 0.00 58.16 77.63 155.94 70.13 0.00 0.00 0.00 28.66 8.14 28.94 9 I1_AR1 ActiveIntronRegion 0 2.67 0.00 1.13 0.00 1.68 3.46 2.50 1.69 1.31 0.00 1.22 0.00 0.00 8.14 24.18 11.23 11.74 0.00 0.00 2.57 2.26 2.62 1.85 10 ER2a ExonRegion 0 0.45 0.01 1.11 0.64 0.00 2.46 1.35 3.65 5.60 3.49 0.46 0.73 0.79 8.64 8.19 9.51 2.73 2.80 0.65 0.43 0.90 0.83 0.00 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 2.84 0.00 0.00 0.00 0.00 5.37 0.00 0.00 7.06 14.09 11.79 4.30 0.00 0.00 0.00 0.00 6.25 0.00 12 I2_AR1 ActiveIntronRegion 0 0.00 6.10 15.93 4.54 5.80 1.83 7.28 6.63 18.53 9.94 1.93 4.33 0.00 2.98 21.28 12.88 0.00 7.70 0.00 8.87 0.00 2.08 5.87 13 I2_AR2 ActiveIntronRegion 0 2.12 6.10 13.34 5.25 3.47 4.69 8.88 3.52 19.99 16.31 0.64 2.89 2.26 4.69 8.92 11.67 2.20 5.06 0.00 5.99 0.00 2.08 6.53 14 I2_AR3 ActiveIntronRegion 0 1.15 1.70 6.88 6.21 12.36 16.26 13.29 3.09 17.89 12.31 1.42 0.00 0.97 4.62 8.30 7.89 1.99 2.24 2.39 3.38 1.65 0.87 2.74 15 I2_AR4 ActiveIntronRegion 0 4.19 9.05 7.29 5.02 9.18 10.10 11.76 9.91 14.01 11.30 0.69 0.00 1.39 2.41 8.42 4.94 2.30 0.99 3.07 3.58 1.58 0.69 3.78 16 E3_Aa NovelBoundary 0 19.63 6.71 14.40 5.29 0.00 8.74 25.44 3.70 8.65 8.97 0.00 12.30 0.00 4.94 9.64 4.19 0.00 1.70 0.00 0.00 0.00 0.00 3.41 17 ER3a ExonRegion 1 37.01 6.55 15.00 13.83 7.37 17.58 11.43 23.57 30.22 7.47 25.22 0.32 8.92 79.03 75.29 122.07 52.09 1.40 0.00 1.35 11.61 9.96 17.69 18 E3_Ab KnownBoundary 0 22.52 6.05 22.86 20.34 15.03 23.00 17.62 34.46 46.87 22.08 23.69 5.55 12.82 87.94 86.16 80.83 57.13 2.11 0.00 3.13 2.90 5.82 11.78 19 ER3b ExonRegion 0 19.05 5.99 9.55 11.88 12.57 21.58 15.79 21.29 40.15 16.99 38.32 31.67 16.98 140.22 162.96 130.49 52.97 3.55 1.97 2.40 13.84 15.69 15.50 20 E3_Da NovelBoundary 0 0.00 8.22 10.44 3.26 3.90 2.33 10.69 6.61 30.41 9.72 2.47 5.70 0.00 14.72 37.21 28.28 4.49 5.97 0.00 9.14 8.96 0.00 3.24 21 E3a_E4a KnownJunction 0 40.90 5.66 14.13 8.49 17.83 36.97 28.40 24.73 28.96 17.35 54.01 80.28 41.56 227.62 221.28 129.54 54.32 0.00 0.00 0.00 10.01 20.94 29.88 22 I3 Intron 0 4.51 2.28 6.24 3.53 9.30 11.93 11.43 7.51 16.71 9.29 1.52 3.85 3.22 8.70 10.61 15.16 6.84 2.37 0.54 3.82 2.71 1.40 4.77 23 I3_SR1 SilentIntronRegion 0 4.52 2.28 6.26 3.54 9.33 11.96 11.46 7.53 16.77 9.32 1.52 3.87 3.23 8.73 10.64 15.21 6.86 2.38 0.54 3.83 2.72 1.41 4.79 24 E4_Aa NovelBoundary 0 9.33 2.89 12.18 6.59 7.39 2.84 22.83 2.01 17.33 12.87 2.11 0.00 13.64 12.54 0.00 3.25 9.35 6.80 0.00 0.00 5.87 2.57 11.95 25 ER4a ExonRegion 0 47.18 10.97 21.45 16.39 30.51 36.08 28.01 40.27 48.74 25.50 65.20 72.31 45.79 220.47 269.84 233.91 80.21 4.52 2.71 3.89 21.48 32.58 20.30 26 E4_Da NovelBoundary 0 0.00 6.51 16.74 8.06 8.15 16.30 16.56 6.08 18.06 15.23 0.00 18.91 0.00 12.71 9.27 7.35 4.11 1.99 4.05 8.88 11.98 0.00 8.71 27 E4a_E5a KnownJunction 0 55.57 0.00 18.42 29.37 22.33 23.23 17.09 64.69 62.21 27.96 78.81 41.86 67.53 264.47 396.19 313.68 113.32 2.28 0.00 3.13 32.25 46.54 29.28 28 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 I4 Intron 0 3.90 3.94 13.28 3.35 6.49 7.82 13.09 5.74 15.35 10.61 2.06 2.42 1.50 4.21 5.51 8.36 0.32 4.81 0.62 4.95 1.92 0.61 5.41 30 I4_SR1 SilentIntronRegion 0 3.91 3.96 13.32 3.36 6.51 7.85 13.14 5.77 15.40 10.65 2.07 2.43 1.50 4.22 5.53 8.39 0.32 4.83 0.62 4.97 1.93 0.61 5.43 31 E5_Aa NovelBoundary 0 3.78 9.21 11.97 5.79 7.89 26.35 29.06 4.76 20.54 18.96 0.00 12.60 0.00 2.47 4.45 24.61 8.42 4.89 4.80 0.00 0.00 3.12 3.59 32 ER5a ExonRegion 0 33.40 8.09 25.16 27.31 27.57 36.50 23.25 55.20 67.49 29.80 62.66 75.63 53.74 285.44 324.00 316.69 101.85 2.98 6.50 3.30 22.45 41.84 31.54 33 E5_Da KnownBoundary 0 0.00 0.00 8.54 3.10 7.98 2.61 14.84 2.09 21.79 16.06 4.74 0.00 0.00 0.00 0.00 11.02 8.98 2.57 0.00 2.88 0.00 0.00 7.77 34 E5a_E6a KnownJunction 0 32.30 8.49 22.18 17.55 16.04 10.51 14.31 42.88 71.41 28.55 78.65 45.61 46.26 173.35 360.96 226.78 138.57 1.74 0.00 9.78 25.82 17.02 22.28 35 ER5b ExonRegion 0 0.00 0.00 1.02 1.03 5.35 1.61 4.20 0.97 3.92 2.46 1.23 0.00 0.00 0.51 0.00 3.26 3.94 1.40 0.00 1.92 0.05 0.15 5.23 36 E5_Db NovelBoundary 0 10.45 0.00 15.49 4.13 4.16 8.69 8.57 6.08 9.98 18.96 0.00 7.05 0.00 2.47 28.93 8.37 0.00 4.64 4.80 0.00 0.00 3.12 8.19 37 E6_Aa NovelBoundary 0 0.00 2.76 2.37 6.93 7.56 9.88 0.00 6.45 16.00 12.30 0.00 0.00 6.82 0.00 10.75 0.00 8.23 10.65 0.00 0.00 2.72 0.00 3.76 38 ER6a ExonRegion 0 43.39 9.66 21.58 26.00 19.06 26.46 17.65 50.29 61.54 28.29 72.63 43.04 50.83 229.66 344.76 259.17 103.81 6.67 3.33 7.02 26.96 33.63 18.96 39 E6_Da NovelBoundary 0 3.63 2.89 3.84 3.60 0.00 0.00 3.97 6.74 7.44 17.97 2.68 0.00 6.82 0.00 0.00 4.36 12.90 6.18 4.42 0.00 0.00 0.00 3.59 40 E6a_E7a KnownJunction 0 163.07 23.02 13.90 44.92 58.06 47.25 25.31 64.98 74.02 30.43 91.34 101.43 77.75 495.73 536.75 652.65 158.02 4.64 17.04 0.00 49.85 65.09 75.12 41 ER7a ExonRegion 0 34.74 6.78 15.43 17.59 23.64 28.48 15.85 36.20 47.53 21.42 39.58 30.04 29.29 203.21 306.72 157.23 61.25 4.29 3.51 7.20 24.27 19.22 22.39 42 E7_Da KnownBoundary 0 146.03 118.73 56.77 47.51 100.76 124.19 137.79 69.99 68.95 58.80 114.66 103.23 115.74 332.33 405.34 303.60 212.53 66.49 93.46 110.00 78.89 38.09 74.61 43 ER7b ExonRegion 1 32.28 35.55 11.28 12.09 26.62 22.08 32.17 10.76 13.70 15.90 13.98 23.81 29.53 34.74 68.06 43.79 29.04 17.00 21.44 31.36 18.52 15.92 31.82 44 ER7c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00