Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DVL1 Gene 0 19.60 19.84 116.78 51.47 20.83 78.07 13.83 59.66 69.37 104.25 83.14 18.73 14.25 85.19 93.59 49.18 44.63 52.63 49.68 40.78 155.61 77.85 80.17 2 378888 Transcript 0 7.12 11.00 81.49 37.23 15.49 62.15 7.68 33.90 49.09 83.26 42.20 10.22 6.78 30.06 32.24 19.07 21.36 39.86 44.14 26.93 39.25 21.18 13.90 3 263743 Transcript 0 0.00 0.00 10.23 2.06 0.00 2.73 0.00 2.55 0.00 1.29 2.68 0.00 0.00 0.00 6.43 0.00 0.00 2.49 0.00 0.00 0.00 5.82 0.00 4 345100 Transcript 0 5.63 9.80 77.53 35.36 15.87 19.31 3.36 49.95 41.78 69.41 41.91 5.40 6.17 35.26 28.06 22.64 10.66 31.50 39.15 14.57 97.61 32.51 28.94 5 378891 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 472445 Transcript 0 2.83 0.52 16.22 3.31 0.90 5.66 1.45 4.34 6.78 9.24 5.76 3.72 3.78 9.19 7.59 8.46 4.67 11.24 10.94 4.26 27.48 6.03 9.66 7 IG5 Intergenic 0 5.24 0.38 3.72 1.98 1.09 0.75 0.87 2.83 2.83 3.97 5.82 5.19 3.47 21.10 32.82 8.39 16.67 4.23 4.70 3.60 5.80 1.63 2.86 8 IG5_SR1 SilentIntergenicRegion 0 5.35 0.39 3.80 2.01 1.11 0.76 0.89 2.88 2.88 4.04 5.91 5.30 3.54 21.51 33.46 8.55 16.99 4.32 4.79 3.67 5.82 1.67 2.91 9 ER1a ExonRegion 0 0.00 0.30 0.63 0.12 0.12 1.14 0.00 1.13 0.76 1.33 2.59 0.00 0.82 3.89 3.11 1.39 1.44 0.49 2.93 0.55 12.48 1.10 1.88 10 E1_Ab KnownBoundary 0 0.00 3.29 8.07 4.23 3.48 6.98 0.00 18.85 9.69 20.58 34.54 0.00 0.00 29.55 12.49 8.72 13.09 10.78 8.28 8.82 29.28 17.94 29.36 11 ER1b ExonRegion 1 7.74 9.61 49.30 18.57 4.60 30.18 3.47 31.97 37.67 60.64 58.12 2.92 5.29 45.51 51.95 25.27 41.80 30.59 33.25 24.92 98.70 46.57 52.28 12 E1_Ac KnownBoundary 0 3.19 11.84 83.05 36.26 7.30 43.67 6.32 79.56 63.02 92.51 113.34 18.76 6.17 57.80 69.60 78.18 80.79 30.72 73.88 26.91 193.92 66.01 79.56 13 ER1c ExonRegion 0 10.73 11.99 106.32 27.35 8.80 64.84 9.49 76.64 78.84 116.25 106.64 13.06 23.05 105.13 81.33 58.74 62.27 62.82 76.45 42.70 241.51 75.18 105.57 14 E1a_E2a KnownJunction 1 19.26 11.91 169.86 34.96 7.64 120.78 19.87 91.43 101.47 172.27 114.56 11.40 33.60 119.61 66.14 43.07 102.29 90.70 76.33 79.77 322.17 100.24 162.02 15 ER2a ExonRegion 0 22.71 8.98 145.26 51.95 1.76 56.06 8.17 82.92 93.06 126.03 132.85 18.12 21.44 113.53 96.16 59.27 85.30 91.09 62.30 59.42 210.99 102.09 124.98 16 E2a_E3a KnownJunction 0 7.41 9.47 163.27 72.75 3.48 30.89 5.74 98.08 87.12 95.74 119.24 36.31 19.64 61.51 102.48 37.60 52.45 101.56 59.11 47.11 145.18 99.32 110.03 17 ER3a ExonRegion 0 12.61 13.02 111.52 30.75 2.39 44.93 7.34 48.60 63.92 87.65 91.27 17.50 11.96 72.18 87.99 43.02 60.88 49.78 48.12 43.56 154.48 70.36 62.80 18 E3a_E4a KnownJunction 0 7.04 19.01 110.02 27.54 8.32 86.26 11.35 40.99 67.19 83.97 98.97 12.60 0.00 58.92 15.45 43.32 44.97 41.12 48.75 21.48 150.55 54.99 67.01 19 ER4a ExonRegion 0 14.08 22.55 102.35 30.09 14.72 82.77 14.23 36.81 45.14 72.50 83.17 21.27 11.45 84.06 94.90 58.30 45.67 53.48 37.15 44.80 148.28 65.03 79.09 20 E4_Da KnownBoundary 0 6.89 0.00 16.35 0.00 0.00 4.83 0.00 5.09 5.90 13.05 7.69 0.00 6.66 10.01 4.45 12.56 7.57 15.30 0.00 2.62 36.63 5.63 11.27 21 E4a_E4b KnownJunction 1 28.38 34.47 144.55 53.14 28.69 75.18 29.10 45.06 47.77 82.57 76.44 0.00 34.09 131.85 69.97 67.08 50.96 84.27 44.33 25.95 141.10 50.70 100.47 22 ER4b ExonRegion 0 2.83 0.52 16.22 3.31 0.90 5.66 1.45 4.34 6.78 9.24 5.76 3.72 3.78 9.19 7.59 8.46 4.67 11.24 10.94 4.26 27.48 6.03 9.66 23 E4_Ab KnownBoundary 0 2.96 0.00 17.27 8.26 4.33 5.45 0.00 4.93 5.38 4.19 5.05 0.00 6.82 12.13 8.90 14.95 0.00 3.90 4.80 3.13 19.71 8.94 3.50 24 ER4c ExonRegion 1 13.97 24.64 128.77 42.48 29.28 93.00 26.40 37.53 59.53 97.29 86.37 6.06 27.60 144.08 100.47 52.65 45.55 92.23 46.51 31.85 183.29 72.57 96.41 25 E4_Db KnownBoundary 0 20.30 31.77 162.06 61.76 38.03 118.85 31.58 48.80 90.13 127.94 100.66 12.60 6.82 125.85 125.35 41.87 38.15 115.28 48.57 50.56 194.29 113.34 123.78 26 ER4d ExonRegion 0 15.88 30.42 170.08 55.81 19.98 97.42 22.40 58.90 106.50 152.39 129.71 12.53 12.48 113.26 152.33 59.36 43.62 91.83 70.57 54.12 217.46 98.63 109.51 27 E4c_E5a KnownJunction 1 17.11 26.97 215.13 76.18 46.86 126.57 31.36 92.66 141.35 187.20 145.35 6.30 33.76 108.66 147.97 67.67 75.08 78.35 68.61 39.69 254.34 139.98 124.20 28 ER5a ExonRegion 0 23.50 22.20 169.33 62.25 33.53 102.99 22.05 80.53 111.21 153.38 139.80 13.34 22.59 135.80 120.25 66.54 82.86 67.91 53.70 49.59 249.56 106.22 140.00 29 E5_Da KnownBoundary 0 26.45 34.34 189.73 59.97 41.34 129.41 26.81 89.91 109.17 153.76 142.25 30.01 12.50 159.99 115.33 59.90 72.74 84.61 65.60 57.46 222.46 85.24 121.30 30 E5a_E12b KnownJunction 0 5.63 9.80 77.53 35.36 15.87 19.31 3.36 49.95 41.78 69.41 41.91 5.40 6.17 35.26 28.06 22.64 10.66 31.50 39.15 14.57 97.61 32.51 28.94 31 ER5b ExonRegion 0 15.62 21.69 135.12 48.31 37.46 86.15 18.42 46.63 73.78 134.93 106.44 20.59 26.37 120.55 156.73 42.80 51.93 25.58 52.95 39.24 198.28 107.69 96.26 32 E5b_E6a KnownJunction 0 14.82 31.24 170.46 74.05 57.39 108.97 18.24 68.88 90.51 171.08 87.76 17.71 56.65 90.29 196.68 38.62 40.77 38.22 51.58 50.94 169.46 134.71 115.92 33 ER6a ExonRegion 0 18.20 23.71 194.03 70.50 42.32 150.76 20.60 96.69 121.98 186.67 118.85 29.69 34.24 114.89 161.77 66.96 68.38 53.61 87.78 73.40 219.99 135.25 127.70 34 E6a_E7a KnownJunction 0 24.15 37.95 289.14 95.03 53.14 211.53 34.27 151.73 180.41 201.73 172.46 48.17 40.09 115.78 165.40 110.23 114.26 118.23 115.67 97.03 309.13 149.10 182.34 35 ER7a ExonRegion 0 19.20 20.51 214.26 89.22 24.31 115.83 22.19 97.56 131.90 175.48 132.67 39.55 33.17 115.81 135.09 74.86 70.36 76.77 84.16 82.75 234.14 133.87 143.43 36 E7a_E8a KnownJunction 0 34.90 41.24 254.72 105.48 82.43 191.31 36.66 132.14 169.91 198.75 176.10 49.22 39.77 138.33 179.62 90.75 105.28 105.71 121.23 86.22 330.45 96.69 182.16 37 ER8a ExonRegion 0 27.21 29.32 213.50 111.72 40.48 138.15 24.50 102.43 142.54 174.64 175.87 45.71 33.26 125.31 136.96 99.82 81.45 108.39 82.98 75.24 256.46 127.66 137.22 38 E8a_E9a KnownJunction 0 29.41 24.86 266.19 128.89 53.74 132.48 21.99 110.20 128.59 192.76 155.83 43.96 27.27 113.31 107.79 99.72 64.89 143.26 99.20 68.39 181.56 110.71 122.33 39 E9_Aa NovelBoundary 0 10.74 0.00 18.12 12.09 3.65 19.53 4.37 12.32 8.62 14.24 10.16 0.00 0.00 4.47 0.00 14.87 4.77 19.86 7.91 2.49 38.86 2.39 11.87 40 ER9a ExonRegion 0 13.51 27.87 212.48 101.43 35.34 147.00 27.80 73.13 115.05 156.62 139.51 44.19 29.93 136.59 129.23 91.26 74.66 127.88 138.94 62.27 214.73 117.35 155.25 41 E9a_E10a KnownJunction 0 18.67 36.31 191.21 95.06 11.29 170.75 24.02 79.85 110.62 138.39 119.03 54.92 39.77 144.51 118.18 68.36 64.42 87.34 88.10 45.70 205.60 101.10 97.66 42 I9 Intron 0 7.60 0.73 6.56 3.65 0.96 7.90 1.43 0.93 5.29 11.66 4.86 1.28 3.07 12.01 25.80 11.74 8.30 8.90 6.86 2.29 22.89 4.49 13.71 43 I9_AR1 ActiveIntronRegion 0 7.68 0.74 6.64 3.70 0.97 8.00 1.45 0.94 5.36 11.83 4.93 1.30 3.12 12.16 26.17 11.91 8.39 9.03 6.96 2.33 23.17 4.55 13.89 44 E10_Aa NovelBoundary 0 50.75 9.41 14.67 13.25 0.00 20.73 6.27 13.84 8.77 23.77 7.16 6.30 6.82 16.42 10.38 8.37 4.77 23.34 4.52 17.51 29.28 10.65 19.63 45 ER10a ExonRegion 0 20.51 28.55 154.87 66.24 19.07 99.80 14.12 49.11 87.42 138.98 98.21 38.13 9.14 112.36 107.16 53.61 54.63 60.98 57.74 45.42 167.51 77.04 94.24 46 E10_Da KnownBoundary 0 13.41 31.31 110.49 59.60 15.20 79.05 11.61 60.09 79.43 116.10 46.43 0.00 13.64 47.32 59.21 37.26 25.06 83.90 56.66 44.81 40.28 22.60 24.07 47 E10a_E11a KnownJunction 0 16.97 6.25 67.71 14.98 15.45 62.07 15.63 22.55 29.22 53.03 64.60 48.77 0.00 95.36 55.50 30.76 55.73 16.79 25.88 14.45 165.38 70.66 76.23 48 ER10b ExonRegion 0 7.79 20.85 110.48 48.97 18.77 86.78 11.83 46.37 71.46 110.73 56.90 17.14 12.69 44.57 59.50 29.25 31.60 63.54 63.41 33.25 49.92 26.56 23.34 49 E10b_E11a KnownJunction 0 13.56 11.84 133.35 62.60 27.59 98.52 11.22 54.22 75.06 137.72 67.12 13.50 6.82 41.73 34.12 26.57 31.04 55.55 66.07 46.98 55.35 35.88 16.48 50 ER11a ExonRegion 0 18.26 34.23 231.75 104.07 27.33 140.98 20.26 110.87 108.48 181.60 129.50 42.25 22.35 133.84 145.83 77.28 64.79 83.19 74.06 58.69 234.21 105.45 113.33 51 E11a_E12a KnownJunction 0 37.49 41.24 339.31 159.99 46.60 172.12 43.24 142.73 158.62 192.49 133.40 12.60 46.75 122.79 144.26 72.12 65.92 106.20 69.84 95.24 322.66 118.30 140.08 52 ER12a ExonRegion 0 16.29 14.80 216.06 102.65 25.25 74.15 21.14 99.17 101.87 155.11 87.15 30.81 25.49 96.65 101.50 52.46 53.91 39.42 47.46 63.06 211.30 72.74 78.14 53 E12_Ab KnownBoundary 0 17.26 33.88 218.27 89.37 55.18 93.07 29.63 115.95 107.15 189.22 122.45 39.46 38.63 104.07 129.67 74.85 73.40 83.45 84.80 50.43 258.85 101.10 78.53 54 ER12b ExonRegion 0 31.58 35.66 280.62 142.43 52.35 148.65 25.92 169.42 145.62 201.76 166.58 41.50 38.80 151.26 144.74 99.13 81.52 123.26 100.42 75.56 333.16 157.65 165.07 55 E12a_E13a KnownJunction 0 43.42 73.08 310.04 168.68 42.61 142.36 28.35 162.08 158.71 204.77 157.20 11.40 52.43 148.45 111.26 93.48 100.42 118.72 121.60 65.20 287.26 136.18 206.15 56 E12a_E13b KnownJunction 0 0.00 0.00 10.23 2.06 0.00 2.73 0.00 2.55 0.00 1.29 2.68 0.00 0.00 0.00 6.43 0.00 0.00 2.49 0.00 0.00 0.00 5.82 0.00 57 E13_Ab NovelBoundary 0 58.08 27.30 212.17 123.73 46.60 77.06 24.38 98.33 102.92 163.40 84.55 25.81 34.09 133.73 122.50 57.51 45.54 103.18 66.92 52.09 214.61 120.02 115.84 58 ER13a ExonRegion 0 43.35 44.49 241.30 140.21 35.64 96.75 22.56 119.26 132.06 183.28 131.05 13.85 39.21 163.26 133.81 71.57 80.41 128.46 88.94 58.04 260.13 140.68 143.66 59 ER13b ExonRegion 0 29.18 32.34 140.69 71.62 23.74 105.20 16.82 69.01 66.68 104.91 82.24 29.07 22.86 95.60 96.86 54.82 33.12 65.70 58.19 29.66 183.72 90.86 107.36 60 E13a_E14a KnownJunction 0 56.68 31.90 87.55 43.98 12.31 75.35 11.88 32.74 44.15 73.84 84.81 24.91 0.00 112.01 128.69 60.33 40.49 41.87 40.19 11.38 137.02 107.16 115.84 61 ER14a ExonRegion 0 28.27 22.30 95.66 46.74 26.04 80.81 14.56 59.58 64.16 101.42 77.25 15.04 8.62 88.97 102.86 50.23 42.20 44.26 43.00 40.66 150.48 84.09 74.90 62 ER14b ExonRegion 0 7.76 3.39 2.04 2.27 6.24 6.11 3.09 1.73 2.06 2.29 3.22 2.89 0.00 1.08 1.93 0.00 0.00 0.00 0.00 0.00 8.08 4.17 0.00