Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC010522.1 Gene 0 41.70 52.62 56.08 30.03 40.26 11.65 26.42 36.04 52.36 36.75 38.58 47.58 64.01 40.07 44.49 57.71 47.12 67.71 35.72 89.25 26.86 15.97 30.89 2 376209 Transcript 0 30.36 29.40 42.75 24.75 31.88 10.33 24.39 26.31 33.45 32.55 38.06 25.01 42.97 47.23 46.58 68.32 45.36 41.80 50.05 62.59 32.12 13.11 44.47 3 442832 Transcript 0 8.43 15.75 15.59 8.56 8.13 0.95 4.17 8.85 12.51 11.25 2.86 3.69 9.08 7.14 12.92 10.30 10.24 49.11 20.24 42.40 9.36 3.02 7.77 4 ER1a ExonRegion 1 40.16 19.78 42.25 20.07 36.81 21.75 36.24 22.40 29.38 36.63 43.62 5.13 4.58 42.39 42.94 82.63 56.19 61.02 63.13 42.53 61.86 14.91 58.13 5 E1_Da NovelBoundary 0 6.30 2.57 18.80 22.64 3.90 0.00 3.80 28.71 26.48 13.43 2.26 6.30 6.33 0.00 14.22 15.04 13.74 39.84 28.52 25.25 15.75 0.00 14.17 6 E1a_E3a KnownJunction 0 0.00 0.00 12.03 8.16 0.00 0.00 5.83 9.49 3.15 15.45 14.06 0.00 0.00 42.97 37.83 47.42 12.81 6.51 30.87 40.59 8.22 5.33 42.00 7 Ix Intron 1 19.45 16.65 32.10 20.95 15.54 5.23 12.69 20.59 35.79 21.12 4.10 13.29 13.63 3.49 17.74 18.11 17.07 28.08 18.79 34.38 15.57 2.79 19.27 8 Ix_SR1 SilentIntronRegion 0 0.78 2.25 4.72 2.25 8.90 0.68 5.38 1.90 6.12 6.32 1.43 1.32 2.82 2.40 6.05 6.59 12.20 9.17 11.77 14.15 10.59 1.54 6.51 9 Ix_SR2 SilentIntronRegion 0 22.34 17.10 31.82 22.07 16.55 5.60 14.09 21.15 37.22 21.66 4.16 14.80 13.25 3.70 18.94 19.59 20.27 36.62 18.38 38.02 17.24 2.40 24.82 10 Ix_AR2 ActiveIntronRegion 0 19.07 21.31 50.37 32.69 16.50 6.42 15.69 30.68 52.93 28.10 6.60 10.14 13.14 5.60 23.42 20.53 20.07 27.89 28.24 44.19 23.24 4.84 19.67 11 Ix_AR3 ActiveIntronRegion 0 14.82 27.45 21.60 27.37 13.16 8.56 19.53 17.93 38.65 21.22 1.93 0.00 1.56 0.00 3.99 6.19 14.30 9.08 24.69 18.35 14.05 0.95 3.92 12 Ix_SR3 SilentIntronRegion 0 17.61 16.33 30.22 15.37 14.22 4.66 8.47 18.43 29.48 19.71 3.24 15.79 19.56 1.99 15.02 16.59 7.14 9.97 15.54 24.48 6.99 3.07 7.49 13 Ix Intron 0 15.66 15.46 21.55 16.25 24.88 3.67 17.48 18.29 26.69 20.00 4.06 18.11 26.62 3.49 12.27 14.85 14.20 12.04 14.01 26.38 10.79 1.88 12.92 14 Ix_SR1 SilentIntronRegion 0 15.33 15.26 23.97 18.23 28.14 4.32 18.90 19.43 29.03 21.74 3.60 20.59 30.55 3.63 12.85 14.53 12.84 9.96 14.45 26.66 9.33 1.79 11.23 15 Ix_AR1 ActiveIntronRegion 0 17.58 16.64 9.22 6.12 8.22 0.29 10.25 12.58 14.81 11.15 6.51 5.39 6.52 2.77 9.41 16.71 21.46 22.96 11.89 25.25 18.54 2.34 21.88 16 E2_Aa NovelBoundary 0 16.89 48.81 44.29 16.61 22.50 2.90 26.72 22.92 26.10 26.38 0.00 6.30 0.00 2.18 13.35 0.00 8.70 26.86 16.85 24.22 28.48 4.71 40.29 17 ER2a ExonRegion 1 19.31 36.89 37.43 19.11 17.37 3.80 8.97 13.82 29.19 17.81 2.55 2.68 8.36 3.92 16.54 19.02 21.74 89.02 20.41 82.40 17.99 3.53 14.67 18 E2_Da NovelBoundary 0 17.78 28.88 70.96 31.80 7.98 2.90 10.60 18.65 23.84 22.94 0.00 11.85 24.51 2.41 4.45 29.48 31.14 70.60 12.24 72.35 14.15 3.12 12.38 19 E2a_E3a KnownJunction 0 6.96 3.16 15.70 8.26 4.33 0.00 0.00 6.74 15.48 14.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.84 32.94 59.70 5.37 0.00 4.35 20 Ix Intron 0 5.38 9.72 23.02 15.42 4.85 1.41 4.54 14.50 21.00 14.50 1.86 3.80 3.73 2.45 7.72 9.74 6.62 19.33 8.10 19.11 7.90 2.01 7.92 21 Ix_SR1 SilentIntronRegion 0 4.49 9.94 24.09 16.75 3.62 1.51 4.60 17.14 24.06 15.30 1.48 4.50 4.79 2.44 6.91 9.80 6.42 21.31 8.63 18.67 6.75 2.21 7.61 22 Ix_AR2 ActiveIntronRegion 0 7.02 10.37 23.98 14.76 7.51 1.40 5.06 10.84 17.37 14.82 2.96 2.37 1.97 2.66 9.20 10.61 8.00 17.80 7.72 22.52 11.51 1.59 8.61 23 ER3a ExonRegion 0 15.27 15.47 39.64 14.28 22.44 7.49 14.29 18.36 29.53 28.88 19.53 11.73 12.04 24.35 18.78 39.20 29.94 85.29 23.53 62.15 16.21 8.99 23.42 24 E3_Da NovelBoundary 0 35.12 25.26 66.59 46.15 8.66 0.00 4.33 42.92 62.62 44.64 9.95 6.00 12.50 14.83 20.40 16.92 24.96 56.92 23.72 48.64 19.65 0.00 11.61 25 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 Ix Intron 1 17.52 29.97 50.63 34.45 14.10 2.65 10.76 28.30 43.52 27.53 4.66 9.13 16.78 3.72 17.69 16.88 18.38 32.64 17.26 41.86 9.98 2.86 12.97 27 Ix_AR1 ActiveIntronRegion 0 8.08 21.69 29.87 14.78 9.83 2.00 11.51 22.14 37.19 22.39 4.56 4.44 9.88 2.09 10.65 16.47 24.54 44.26 22.74 34.43 13.55 3.47 13.46 28 Ix_SR1 SilentIntronRegion 0 18.47 30.83 52.74 36.42 14.54 2.72 10.71 28.95 44.20 28.08 4.68 9.60 17.48 3.88 18.41 16.95 17.80 31.56 16.76 42.65 9.65 2.81 12.94 29 ER4a ExonRegion 0 51.86 66.94 64.83 34.14 46.25 14.02 30.88 45.92 66.12 42.34 46.78 70.21 82.84 47.75 52.10 62.93 50.31 67.83 29.36 105.94 24.29 20.26 31.26 30 E4_Da KnownBoundary 0 40.82 77.42 122.29 63.36 49.24 10.39 60.59 76.60 93.63 67.77 85.65 123.94 175.31 72.28 79.36 91.94 83.78 71.01 29.37 120.48 41.33 25.96 28.94 31 E4a_E5a KnownJunction 0 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 32 ER4b ExonRegion 0 50.93 68.43 73.97 46.01 58.83 9.25 31.10 47.05 67.80 45.59 56.50 69.90 124.34 56.34 58.98 74.91 67.09 57.87 56.14 104.66 26.29 19.10 33.27 33 E4_Db NovelBoundary 0 384.36 362.11 374.82 175.67 257.22 37.65 100.29 265.79 324.50 210.33 62.38 88.83 116.88 99.12 113.11 116.98 93.88 145.13 133.65 271.46 41.45 34.05 61.21 34 Ix Intron 0 46.52 52.91 67.49 37.68 39.66 6.65 28.96 46.47 46.65 33.13 41.28 34.37 41.26 40.93 66.39 63.00 43.80 38.76 31.36 62.53 18.16 15.66 32.57 35 Ix_AR1 ActiveIntronRegion 0 24.13 36.60 8.77 6.09 8.03 1.10 5.56 7.71 12.15 6.14 25.54 28.27 37.41 19.43 27.34 37.38 29.71 17.67 19.11 45.93 10.58 7.50 22.91 36 Ix_SR1 SilentIntronRegion 0 66.86 63.40 67.47 34.80 45.01 3.61 32.27 47.83 55.19 40.33 49.53 41.83 41.14 32.44 60.94 56.32 48.80 35.02 24.45 76.89 14.64 19.19 21.69 37 Ix_AR2 ActiveIntronRegion 0 41.15 53.69 77.50 50.97 41.16 6.88 32.82 53.73 47.67 33.32 41.12 21.40 30.06 46.50 80.53 74.34 40.90 47.03 34.81 61.60 22.03 16.03 43.77 38 Ix_SR2 SilentIntronRegion 0 27.61 37.99 75.27 30.71 41.26 15.22 25.52 47.36 44.21 31.44 32.67 50.27 67.90 57.20 66.70 65.23 46.98 39.23 44.39 43.53 20.90 11.74 35.70 39 E5_Aa NovelBoundary 0 2369.01 2063.05 2715.55 2894.40 1787.27 1471.14 2540.55 2569.14 2441.44 2162.09 744.08 589.24 1103.99 457.06 644.79 1904.12 1469.94 3482.08 1384.70 2310.22 1046.45 769.15 1917.60 40 ER5a ExonRegion 0 7.44 20.24 9.21 6.88 10.83 0.00 7.70 14.86 5.37 13.02 8.91 12.09 27.98 24.62 35.15 22.17 19.20 27.59 27.61 24.24 14.08 8.55 12.05