Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF587 Gene 0 95.93 85.04 156.74 95.53 93.13 51.55 65.62 82.79 118.00 103.41 46.54 56.13 48.66 61.21 81.71 78.43 54.11 108.48 74.66 104.64 48.51 35.47 57.45 2 484707 Transcript 0 34.76 39.61 48.67 35.14 27.15 10.66 24.13 41.36 28.39 34.92 6.54 14.26 15.22 24.70 33.89 33.95 16.85 37.31 21.95 35.63 21.73 9.14 23.98 3 423137 Transcript 0 7.56 2.83 13.57 7.59 3.82 0.00 0.00 9.32 18.06 18.51 14.53 17.56 0.00 27.43 4.45 27.09 4.11 50.66 62.03 32.02 5.81 10.84 21.08 4 339656 Transcript 0 13.79 9.42 13.96 7.88 13.24 10.06 9.02 16.17 18.47 18.48 15.40 5.93 6.98 21.68 17.00 26.18 13.97 28.85 11.53 22.01 10.47 9.14 13.66 5 419854 Transcript 0 120.64 91.75 119.05 70.00 70.00 12.85 49.72 59.76 83.25 64.83 9.20 18.53 20.04 28.58 50.05 65.61 32.67 122.26 54.46 130.44 49.92 10.80 34.03 6 ER1a ExonRegion 0 7.11 15.74 31.16 13.92 13.89 22.31 17.21 27.98 29.05 19.31 5.34 0.00 2.68 11.72 32.74 21.87 16.43 40.17 23.13 63.83 20.46 1.44 22.65 7 E1_Ab KnownBoundary 0 87.35 77.22 135.06 64.86 83.19 119.25 110.10 112.87 115.28 108.28 29.95 0.00 6.82 29.31 97.29 94.51 68.54 186.13 93.27 210.48 102.06 21.43 111.83 8 ER1b ExonRegion 0 8.11 3.80 33.63 19.07 8.69 7.80 9.27 37.28 36.17 30.49 16.07 4.94 1.88 9.74 19.78 23.93 26.91 56.61 15.83 45.48 36.40 3.63 24.91 9 E1_Da NovelBoundary 0 0.00 11.12 45.68 28.90 19.10 8.35 10.69 33.06 59.61 34.44 10.21 0.00 0.00 17.36 34.74 20.17 17.20 51.36 30.78 67.56 31.63 14.94 17.16 10 E1a_E2a KnownJunction 0 0.00 0.00 9.99 8.29 4.07 0.00 0.00 11.87 0.00 6.72 2.21 0.00 0.00 19.07 16.07 19.57 4.68 2.07 0.00 0.00 8.59 5.76 4.18 11 E1a_E3b KnownJunction 0 0.00 0.00 13.54 3.06 4.33 0.00 0.00 19.02 23.81 21.73 23.48 0.00 0.00 28.96 14.09 37.17 17.20 38.59 7.44 28.51 10.93 7.72 11.78 12 E1a_E3c KnownJunction 0 7.56 2.83 13.57 7.59 3.82 0.00 0.00 9.32 18.06 18.51 14.53 17.56 0.00 27.43 4.45 27.09 4.11 50.66 62.03 32.02 5.81 10.84 21.08 13 Ix Intron 0 49.72 65.96 98.31 65.88 37.54 8.24 24.00 57.06 69.13 51.06 8.61 11.10 17.22 6.83 18.97 28.23 17.30 68.58 37.91 78.91 17.97 6.24 23.38 14 Ix_AR1 ActiveIntronRegion 0 1.54 9.62 15.96 6.66 4.87 0.67 2.89 8.44 12.74 8.09 2.11 3.90 2.81 1.46 7.90 4.33 4.79 30.78 6.96 17.83 8.01 0.76 4.28 15 Ix_AR2 ActiveIntronRegion 0 35.85 59.32 84.08 52.87 30.04 6.79 18.35 56.72 70.31 50.50 8.25 9.20 7.93 5.69 14.58 30.39 17.18 82.34 35.77 69.27 19.21 5.23 21.38 16 Ix_SR2 SilentIntronRegion 0 103.17 105.55 167.02 121.92 69.24 14.90 46.41 78.29 90.00 70.46 12.21 18.70 45.56 11.81 34.20 33.10 22.84 51.60 56.07 127.72 19.23 10.97 36.23 17 E2_Aa NovelBoundary 0 146.17 61.44 60.41 85.07 56.79 44.24 30.21 39.43 48.29 38.28 2.37 6.00 0.00 4.59 5.07 10.94 13.00 18.12 16.94 34.71 17.67 16.84 39.27 18 ER2a ExonRegion 1 69.51 79.22 87.35 61.98 50.23 21.32 48.26 70.84 56.79 63.12 10.86 28.51 30.44 30.33 51.72 48.33 29.02 72.54 43.90 71.25 34.87 12.53 43.79 19 E2_Da NovelBoundary 1 107.35 198.39 259.54 135.71 79.80 32.94 64.74 111.11 174.88 124.77 19.74 26.26 68.50 41.50 98.52 82.71 56.76 174.19 78.68 158.83 79.14 20.70 93.39 20 Ix Intron 0 37.18 44.62 123.99 85.06 30.94 8.84 19.73 55.75 50.21 58.66 7.02 9.17 10.55 17.63 20.96 26.43 18.11 70.21 35.89 57.88 28.90 7.72 19.37 21 Ix_AR1 ActiveIntronRegion 0 15.51 36.96 164.04 125.31 23.53 7.26 17.85 79.65 65.55 78.90 5.95 7.02 8.17 12.26 15.95 22.21 19.83 85.22 33.61 60.80 25.83 8.55 15.06 22 Ix_SR1 SilentIntronRegion 0 59.71 52.77 83.48 44.13 38.76 10.51 21.77 31.48 34.71 38.16 8.17 11.45 13.07 23.26 26.24 30.94 16.43 55.18 38.45 55.20 32.24 6.92 23.93 23 E3_Aa NovelBoundary 0 105.20 53.94 105.08 78.11 23.43 13.97 13.34 34.71 54.60 53.78 4.69 17.71 6.82 57.04 91.48 52.98 33.10 81.33 37.46 90.76 51.71 8.14 55.83 24 ER3a ExonRegion 0 120.64 91.75 119.05 70.00 70.00 12.85 49.72 59.76 83.25 64.83 9.20 18.53 20.04 28.58 50.05 65.61 32.67 122.26 54.46 130.44 49.92 10.80 34.03 25 E3_Ab KnownBoundary 0 38.23 40.12 78.09 63.43 29.29 12.44 14.49 49.04 59.29 51.49 7.79 6.00 0.00 10.12 9.77 23.67 17.95 91.53 26.17 65.96 51.52 7.84 26.97 26 E3_Ac KnownBoundary 0 6.45 15.92 19.75 22.61 7.56 5.22 8.70 13.76 26.76 10.91 0.00 0.00 6.82 2.47 10.01 16.66 13.93 24.62 8.47 52.28 11.68 0.00 19.12 27 ER3b ExonRegion 0 66.32 83.38 151.13 123.11 71.35 26.28 48.55 107.16 150.68 107.81 29.64 31.75 28.14 74.71 64.79 89.16 75.92 173.07 46.72 186.52 83.01 27.09 51.88 28 ER3c ExonRegion 0 22.29 19.87 68.28 40.56 12.68 9.91 7.42 51.95 79.87 64.74 16.34 7.22 7.78 20.93 25.56 36.99 30.00 67.85 26.17 82.22 44.37 4.89 26.87 29 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 Ix Intron 0 40.57 56.58 83.53 60.20 33.28 4.16 20.72 39.24 43.35 38.89 2.34 4.62 9.63 4.22 14.13 13.48 8.86 43.00 24.57 48.50 7.83 4.25 10.10 31 Ix_SR1 SilentIntronRegion 0 9.33 17.29 42.51 35.80 21.06 1.15 17.51 26.75 22.58 25.27 1.80 0.00 6.05 3.25 9.94 13.94 2.06 59.26 17.01 32.15 3.47 3.94 4.59 32 Ix_AR2 ActiveIntronRegion 0 15.34 26.39 51.97 32.84 11.50 0.35 7.97 28.70 23.62 20.29 0.71 2.77 4.89 2.23 11.65 7.11 6.70 21.65 14.82 37.64 3.40 1.40 4.33 33 Ix_SR2 SilentIntronRegion 0 17.14 17.49 10.66 5.86 10.70 3.67 8.74 10.37 12.47 2.29 0.00 0.00 4.69 0.00 5.80 0.00 0.00 0.00 9.56 19.57 3.97 2.08 0.00 34 Ix_AR3 ActiveIntronRegion 0 67.77 76.77 132.64 85.16 45.30 5.40 27.72 58.66 66.73 53.74 3.75 8.20 8.26 6.93 15.86 16.04 10.82 58.92 25.58 66.34 8.89 4.53 13.49 35 Ix_SR3 SilentIntronRegion 0 69.48 100.76 133.74 113.99 62.22 7.03 35.61 60.61 71.19 57.38 2.25 7.24 16.88 4.82 17.63 20.45 12.45 50.88 33.70 73.79 8.40 8.61 14.67 36 Ix_SR5 SilentIntronRegion 0 40.98 66.00 61.24 35.45 29.19 6.50 18.42 26.68 37.15 51.71 3.69 5.07 12.04 5.71 17.04 15.40 12.60 44.35 39.96 31.91 15.61 5.11 15.22 37 Ix_AR6 ActiveIntronRegion 0 16.90 23.97 32.93 22.55 15.78 3.82 10.11 13.39 15.95 11.87 2.01 1.24 8.14 1.26 10.44 5.16 5.73 22.30 13.26 28.02 8.41 0.00 6.11 38 E4_Aa NovelBoundary 0 23.12 24.80 115.08 84.30 43.12 2.21 30.60 47.19 47.68 58.13 4.69 13.35 12.34 0.00 22.25 3.33 13.00 54.18 42.92 99.07 14.46 2.39 23.90 39 ER4a ExonRegion 0 105.53 96.63 218.62 119.80 115.04 54.06 78.43 107.59 172.46 139.07 62.36 83.61 54.62 60.26 64.53 90.74 71.09 139.59 89.17 147.32 55.53 35.46 61.76 40 E4_Da KnownBoundary 1 223.82 321.00 479.49 263.00 344.91 121.86 183.89 294.30 441.89 363.85 115.92 274.89 83.11 164.58 354.78 311.29 204.67 429.00 422.32 315.62 164.57 134.16 198.98 41 ER4b ExonRegion 0 119.77 105.46 187.45 118.34 115.55 66.95 80.54 97.18 136.61 123.26 58.04 65.09 62.40 82.75 115.27 98.41 64.38 127.28 93.24 117.20 58.41 48.13 72.24 42 E4_Db KnownBoundary 0 20.89 14.73 29.45 32.53 18.76 5.17 17.14 19.02 16.70 40.67 7.32 7.50 0.00 7.06 29.30 10.51 4.49 17.78 13.18 8.25 7.66 12.92 7.43 43 ER4c ExonRegion 0 27.57 18.84 14.37 12.70 22.15 20.12 18.04 13.33 13.12 15.23 7.32 11.87 13.97 14.40 19.91 15.18 10.74 19.11 15.63 15.51 10.00 10.57 15.54