Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF544 Gene 0 93.39 65.02 228.71 52.27 131.83 71.20 79.00 126.92 110.92 170.62 113.04 56.53 55.72 83.73 66.25 84.15 87.80 183.57 98.68 16.56 55.59 33.20 47.96 2 269829 Transcript 1 58.92 24.08 108.18 13.18 56.73 62.67 46.80 39.62 37.83 78.63 82.09 8.22 4.16 58.74 59.70 63.45 58.98 109.08 62.15 0.61 43.33 14.89 26.87 3 333581 Transcript 0 3.55 4.11 1.49 2.67 16.89 4.83 11.31 0.95 1.80 2.52 5.81 13.86 9.81 4.19 6.31 12.50 8.68 8.95 19.13 0.00 3.62 1.38 0.00 4 415203 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 441758 Transcript 1 251.60 169.44 557.25 124.36 551.78 226.91 388.90 336.93 320.34 452.87 306.87 131.74 98.37 146.57 40.79 207.38 181.39 373.41 226.64 38.73 87.41 60.56 98.68 6 ER1a ExonRegion 0 8.87 3.95 6.03 0.79 10.71 12.55 8.04 3.71 2.07 3.90 5.99 0.00 0.00 4.32 5.36 7.62 3.33 9.80 4.22 0.00 4.65 1.83 3.28 7 E1a_E2a KnownJunction 1 181.29 63.67 79.09 5.83 161.46 222.77 137.48 38.90 32.18 47.14 68.44 6.45 0.00 82.76 107.42 122.87 44.69 121.29 63.15 0.00 56.84 13.90 44.99 8 ER2a ExonRegion 1 102.62 33.05 111.37 11.46 111.29 105.04 79.46 48.48 41.72 92.45 71.27 3.74 4.28 40.59 49.88 71.85 55.15 202.57 88.45 0.00 37.38 17.98 30.91 9 E2a_E3a KnownJunction 0 40.01 19.47 82.91 14.45 23.34 21.01 20.98 21.07 42.53 60.36 39.59 0.00 12.82 26.90 16.44 23.93 44.04 49.58 61.93 0.00 32.06 3.06 4.35 10 ER3a ExonRegion 1 20.71 14.41 147.44 21.31 25.83 14.67 21.64 51.23 48.35 112.31 152.45 14.81 7.88 61.81 48.82 47.04 115.20 98.09 63.48 0.56 72.50 15.16 18.60 11 E3_Da NovelBoundary 0 22.60 0.00 32.91 4.03 15.45 0.00 0.00 25.18 19.65 24.87 16.27 18.01 21.75 24.19 38.82 20.42 18.33 41.62 36.42 0.00 5.99 5.57 4.35 12 E3a_E4b KnownJunction 1 0.00 9.93 222.23 25.24 7.72 0.00 13.20 74.34 60.13 155.61 154.78 24.31 0.00 136.03 130.29 107.41 91.44 173.15 91.67 3.13 56.53 37.41 59.07 13 ER4a ExonRegion 1 2.65 3.56 53.61 6.81 2.01 1.83 2.98 23.77 13.59 41.58 44.46 2.16 3.52 31.26 28.29 31.21 30.53 50.81 22.30 0.53 19.83 10.42 13.95 14 ER4b ExonRegion 1 29.98 23.60 211.52 29.47 42.05 32.00 19.16 74.70 65.38 140.70 151.91 19.55 23.09 100.55 122.49 114.44 88.22 275.21 121.29 0.75 63.79 29.70 61.15 15 E4_Da NovelBoundary 0 3.48 12.89 28.00 14.72 19.02 7.89 8.70 18.36 23.12 25.57 2.26 7.65 6.82 2.47 6.30 6.66 9.26 52.40 17.98 6.20 3.03 3.12 7.17 16 E4a_E5a KnownJunction 1 20.97 49.33 272.43 46.31 137.10 75.13 27.07 77.51 63.74 128.96 147.83 24.91 21.43 113.13 137.34 94.42 134.36 236.57 95.91 0.00 66.10 8.21 35.25 17 I4 Intron 0 7.86 4.89 16.50 7.99 10.14 5.61 5.98 7.32 12.61 10.46 4.93 2.30 3.12 3.22 8.21 6.28 6.97 22.42 13.00 1.24 8.83 1.97 11.98 18 I4_SR1 SilentIntronRegion 0 7.75 3.15 17.60 5.69 1.83 4.20 2.10 7.84 15.11 10.77 3.72 0.00 3.53 2.28 10.46 6.34 6.62 39.46 9.13 1.82 12.42 1.35 9.29 19 I4_SR2 SilentIntronRegion 0 7.98 5.55 16.24 8.87 13.18 6.20 7.39 7.19 11.79 10.39 5.40 3.14 2.93 3.57 7.57 6.34 7.08 16.42 14.44 1.06 7.65 2.21 13.09 20 E5_Aa NovelBoundary 0 17.41 8.55 27.59 12.75 19.10 13.17 11.66 24.77 19.94 12.76 7.42 17.86 0.00 4.83 14.09 10.77 4.58 37.43 11.77 0.00 29.59 2.88 19.63 21 ER5a ExonRegion 1 38.55 52.54 218.92 45.58 99.26 132.63 88.99 76.32 74.87 153.49 157.86 39.78 24.11 110.09 81.08 77.93 116.21 179.97 98.50 1.71 90.99 26.02 32.67 22 E5_Da NovelBoundary 0 0.00 9.21 19.99 19.21 0.00 2.38 9.14 33.68 23.44 19.15 0.00 0.00 0.00 0.00 19.66 12.22 16.74 45.18 13.93 5.24 2.53 5.39 16.99 23 E5a_E6a KnownJunction 0 52.38 52.29 180.01 41.12 43.55 37.14 58.65 58.33 47.05 126.84 119.03 50.57 51.62 83.76 42.90 71.18 70.03 173.77 61.93 0.00 42.69 31.84 24.50 24 I5 Intron 0 12.21 12.83 20.07 19.03 9.16 2.31 9.07 9.28 12.27 9.86 5.22 2.57 2.09 1.88 8.80 6.96 4.16 37.58 14.93 2.68 7.15 2.63 11.64 25 I5_SR1 SilentIntronRegion 0 12.29 12.92 20.22 19.16 9.23 2.33 9.13 9.34 12.36 9.92 5.26 2.59 2.10 1.89 8.86 7.01 4.19 37.84 15.03 2.70 7.19 2.64 11.72 26 E6_Aa NovelBoundary 0 69.86 9.27 23.57 17.18 19.27 10.05 25.61 4.64 9.72 9.64 2.11 0.00 0.00 4.83 0.00 16.58 4.77 20.48 16.94 6.07 2.90 0.00 8.45 27 ER6a ExonRegion 0 71.53 27.19 179.82 28.46 47.11 38.09 43.15 46.11 49.80 105.13 122.95 34.38 31.71 97.64 95.05 76.14 65.19 162.45 98.90 5.24 59.53 21.06 29.44 28 E6_Da NovelBoundary 0 30.08 44.66 105.11 50.11 23.77 11.19 33.25 47.52 43.81 59.66 20.11 23.11 6.66 24.55 33.75 43.15 18.79 158.64 22.59 0.00 23.04 11.08 45.93 29 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E6a_E8a KnownJunction 0 31.26 12.70 37.88 1.47 16.21 5.51 5.34 26.57 37.96 45.13 44.64 6.30 26.30 42.56 19.90 35.38 17.39 58.66 34.82 0.00 34.16 7.29 3.41 31 I6 Intron 0 36.36 36.42 61.66 24.15 42.02 23.77 39.26 38.52 27.52 52.50 24.60 17.84 12.98 28.92 22.12 28.55 36.24 54.43 33.26 4.87 19.83 7.94 16.57 32 I6_SR1 SilentIntronRegion 0 12.25 12.88 53.37 13.43 24.34 16.18 24.82 20.58 14.71 23.08 12.25 5.90 3.42 17.44 28.13 17.21 14.56 40.50 45.65 1.17 19.43 2.87 9.71 33 I6_AR2 ActiveIntronRegion 0 45.76 45.60 65.10 28.36 48.97 26.78 44.97 45.57 32.54 64.00 29.45 22.50 16.70 33.45 19.90 33.03 44.71 60.00 28.64 6.30 20.06 9.92 19.27 34 E7_Aa NovelBoundary 0 13.34 17.50 46.07 43.28 58.66 15.56 33.08 29.41 45.75 61.00 13.95 19.06 6.82 20.43 0.00 22.99 17.86 64.21 47.34 14.06 14.27 16.41 4.10 35 ER7a ExonRegion 1 7.09 8.21 2.98 5.35 33.78 9.67 22.61 1.91 3.61 5.03 11.62 27.72 19.61 8.37 12.62 21.08 17.36 17.90 38.27 0.00 7.24 2.76 0.00 36 E7_Da NovelBoundary 0 39.27 63.34 60.94 46.88 68.17 12.78 53.17 42.51 53.41 69.36 34.22 30.46 27.27 29.31 36.22 38.37 26.46 115.20 100.99 18.66 22.30 5.20 15.88 37 Ix Intron 0 43.89 42.18 112.93 40.27 48.86 27.04 40.06 38.65 31.45 59.30 22.44 16.69 26.52 19.00 33.06 31.79 34.01 113.02 47.39 25.81 35.93 13.32 20.68 38 Ix_AR1 ActiveIntronRegion 0 44.00 42.28 113.21 40.37 48.99 27.11 40.17 38.74 31.53 59.44 22.50 16.73 26.59 19.05 33.14 31.87 34.09 113.30 47.50 25.88 36.02 13.36 20.74 39 Ix Intron 0 42.88 21.89 61.32 18.41 50.04 18.96 27.38 26.65 22.42 41.41 24.10 10.61 21.43 19.10 20.94 24.84 26.65 48.06 52.35 12.06 10.61 12.40 24.13 40 Ix_SR1 SilentIntronRegion 0 52.81 21.50 40.16 7.13 44.83 18.82 24.95 16.21 14.08 24.38 18.13 3.65 10.61 21.19 20.38 22.18 22.99 31.69 46.03 6.71 7.81 9.78 18.96 41 Ix_AR1 ActiveIntronRegion 0 34.07 22.37 80.89 28.78 55.04 19.20 29.75 36.29 30.14 57.11 29.65 17.00 31.38 17.30 21.56 27.40 30.13 63.20 58.37 16.99 13.22 14.84 28.96 42 E8_Aa NovelBoundary 0 59.42 40.52 101.98 33.60 65.37 15.16 42.84 43.21 44.96 55.01 36.01 0.00 34.09 41.79 22.99 22.22 24.68 47.38 26.45 16.75 22.55 8.33 48.40 43 ER8a ExonRegion 0 76.00 60.30 207.88 55.35 122.52 66.64 74.03 123.00 127.22 178.60 122.55 60.37 67.57 78.13 47.50 86.10 96.74 174.02 81.08 15.38 49.69 39.26 40.96 44 E8_Ab KnownBoundary 0 106.91 62.69 281.13 68.02 108.49 76.94 69.73 159.57 153.07 212.59 150.20 81.33 101.13 112.19 45.61 115.18 110.80 288.85 157.65 25.69 45.10 62.03 44.64 45 ER8b ExonRegion 0 122.91 80.16 233.54 65.88 162.24 88.58 120.80 148.28 136.99 201.51 140.25 67.09 69.36 101.87 56.14 102.98 109.40 193.98 127.01 19.95 56.39 46.69 58.73 46 E8_Da KnownBoundary 0 151.43 116.43 289.76 67.12 326.66 154.40 257.03 169.47 168.05 252.42 189.26 86.13 69.96 128.91 65.64 126.46 116.50 185.21 171.20 15.08 58.32 44.27 66.16 47 E8a_E8c KnownJunction 1 251.60 169.44 557.25 124.36 551.78 226.91 388.90 336.93 320.34 452.87 306.87 131.74 98.37 146.57 40.79 207.38 181.39 373.41 226.64 38.73 87.41 60.56 98.68 48 ER8c ExonRegion 0 143.62 84.03 302.82 65.40 204.75 88.06 134.94 193.10 163.81 224.00 147.38 89.57 74.61 107.05 73.20 110.37 105.07 200.56 110.07 21.43 58.02 41.70 67.48 49 E8_Ac KnownBoundary 0 141.06 85.71 314.09 66.69 327.00 112.09 178.06 210.26 171.38 222.58 177.83 102.63 56.00 111.19 44.87 108.60 124.73 218.13 109.65 26.33 50.97 26.45 54.72 50 ER8d ExonRegion 0 140.06 78.70 309.59 71.28 190.98 91.61 102.35 179.37 153.98 238.12 133.76 88.37 90.90 118.11 90.92 102.23 113.96 249.58 136.96 23.50 82.33 36.86 71.23 51 E8_Db KnownBoundary 0 194.48 87.42 280.33 59.27 174.45 77.34 107.49 208.49 150.40 205.66 145.14 162.65 85.55 83.35 85.30 106.04 121.83 287.94 177.23 39.69 119.97 35.09 93.81 52 ER8e ExonRegion 0 107.36 87.94 290.74 61.06 147.19 72.28 69.31 152.87 114.08 185.88 98.89 57.95 55.33 84.81 88.22 85.33 81.28 212.34 112.72 25.15 60.82 33.75 54.93