Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF274 Gene 0 85.50 50.83 40.98 65.07 73.76 37.80 29.26 36.43 41.93 29.17 36.19 33.54 27.04 58.26 54.82 52.71 37.60 68.25 28.96 34.52 45.72 44.06 38.20 2 326804 Transcript 0 47.29 18.10 12.07 23.52 41.22 17.13 16.85 13.83 20.27 15.49 16.93 10.03 9.71 33.73 32.62 29.82 16.29 32.79 13.48 21.26 25.65 19.83 27.67 3 424679 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 345813 Transcript 0 0.00 0.00 0.00 1.56 6.96 0.00 0.00 0.00 1.39 1.45 0.00 0.00 0.00 0.00 0.00 0.00 4.68 7.96 0.00 0.00 0.00 0.00 0.00 5 IG18_AR2 ActiveIntergenicRegion 0 1.33 2.56 6.44 2.30 3.37 4.56 1.83 6.16 9.27 10.76 0.00 0.00 0.00 0.51 0.52 1.12 1.20 19.67 8.42 6.43 11.09 0.79 5.18 6 ER1a ExonRegion 0 1.77 1.75 1.80 2.04 4.10 1.57 3.13 0.74 3.36 1.75 2.84 0.44 0.48 4.20 4.70 6.78 1.56 8.81 7.55 4.81 7.64 1.06 6.53 7 E1a_E2a KnownJunction 0 52.31 6.25 4.41 8.09 39.13 14.76 15.19 5.34 10.16 8.76 10.21 0.00 0.00 26.43 40.18 36.74 8.98 27.03 3.76 14.45 19.58 0.00 36.54 8 E2_Aa NovelBoundary 0 6.30 12.30 24.90 23.41 24.02 8.57 10.55 11.42 16.17 14.24 7.37 6.00 6.82 4.94 8.90 14.53 4.49 33.08 9.04 0.00 23.17 7.96 11.27 9 ER2a ExonRegion 1 56.00 10.70 5.33 10.52 54.56 24.12 32.55 7.59 12.49 14.29 25.00 0.00 0.00 38.66 33.49 58.15 23.25 62.26 11.63 35.15 40.67 18.21 48.14 10 E2_Ab KnownBoundary 0 32.15 20.13 9.70 19.44 47.88 27.31 33.17 16.80 17.53 23.56 42.12 5.55 0.00 36.73 29.42 54.17 39.08 105.25 20.33 47.11 47.32 25.66 40.12 11 ER2b ExonRegion 0 21.03 13.66 3.87 16.65 17.31 20.52 18.25 13.40 11.00 13.94 21.20 2.03 6.60 30.60 12.69 34.37 20.63 59.01 18.71 21.74 26.44 17.78 29.00 12 E2_Da NovelBoundary 0 3.41 2.76 18.24 30.83 7.72 5.22 4.06 4.56 4.92 2.95 0.00 0.00 0.00 4.65 0.00 4.36 4.11 30.05 12.42 3.26 2.35 5.76 4.35 13 E2a_E3a KnownJunction 0 38.75 17.69 0.00 17.38 10.02 23.51 10.82 13.76 7.06 9.27 14.06 0.00 26.30 16.19 8.90 15.38 17.11 26.82 20.61 3.13 13.59 16.41 16.30 14 I2_SR1 SilentIntronRegion 0 5.17 6.10 10.47 12.49 17.44 8.23 8.39 10.57 9.40 4.82 0.62 2.38 2.57 3.51 4.46 6.93 5.50 16.69 9.43 4.20 4.90 3.35 10.38 15 I2_SR2 SilentIntronRegion 0 9.06 9.37 7.13 11.69 17.33 3.39 8.89 1.32 6.55 2.73 1.57 4.77 12.10 0.79 8.07 1.49 5.74 9.23 1.71 3.04 9.45 0.50 5.77 16 I2_AR3 ActiveIntronRegion 0 9.32 11.92 8.05 9.90 14.36 11.15 7.32 3.16 8.07 1.34 2.54 11.00 7.92 2.04 6.47 2.29 2.00 10.24 14.23 10.09 12.76 2.29 10.56 17 E3_Aa NovelBoundary 0 27.41 24.21 16.20 24.41 15.28 5.28 17.75 1.93 19.44 5.96 0.00 0.00 7.63 0.00 14.59 7.60 11.69 27.98 7.81 14.51 22.67 2.63 15.37 18 ER3a ExonRegion 0 19.37 25.16 23.73 28.02 29.39 16.20 5.79 16.77 17.93 19.77 30.09 18.24 16.32 36.89 31.50 33.58 31.68 60.03 16.85 27.76 42.34 21.48 27.38 19 E3_Da NovelBoundary 0 44.97 34.27 14.69 26.94 4.33 2.33 14.53 5.30 17.74 7.76 2.63 0.00 6.82 2.47 0.00 4.10 0.00 36.19 17.69 20.20 4.88 2.39 14.68 20 E3a_E4a KnownJunction 0 16.74 9.21 11.44 17.21 25.64 5.22 7.73 10.02 23.70 20.28 50.70 26.56 13.15 61.63 51.42 42.38 25.06 66.57 13.46 45.06 29.71 35.15 47.55 21 E3a_E5a KnownJunction 0 0.00 0.00 0.00 1.56 6.96 0.00 0.00 0.00 1.39 1.45 0.00 0.00 0.00 0.00 0.00 0.00 4.68 7.96 0.00 0.00 0.00 0.00 0.00 22 I3 Intron 0 19.31 12.42 13.12 11.67 17.30 6.85 9.03 6.85 8.20 3.44 0.83 1.79 3.07 2.33 7.26 8.33 4.51 20.71 10.29 9.32 9.49 2.84 9.07 23 I3_AR1 ActiveIntronRegion 0 30.06 15.32 13.75 15.73 16.70 8.29 9.12 10.53 13.47 4.78 2.08 0.77 5.05 2.18 7.60 6.40 9.23 22.73 8.90 14.18 10.90 4.48 10.11 24 I3_SR1 SilentIntronRegion 0 13.99 11.01 12.85 9.68 17.67 6.16 9.03 5.02 5.58 2.78 0.21 2.32 2.09 2.42 7.11 9.33 2.14 19.78 11.04 6.91 8.82 2.03 8.59 25 ER4a ExonRegion 0 7.25 23.47 22.69 41.04 42.73 21.68 14.30 30.72 25.76 26.20 36.68 19.39 18.86 58.65 32.82 61.39 39.44 78.86 31.72 30.05 43.94 40.24 37.32 26 E4_Da NovelBoundary 0 25.49 17.30 16.88 20.58 18.93 5.22 20.62 8.95 1.68 2.71 0.00 0.00 0.00 6.77 24.85 21.11 7.85 13.97 18.17 11.70 0.00 0.00 11.95 27 E4a_E5a KnownJunction 0 2.82 18.75 35.66 34.86 21.48 17.43 19.70 42.55 38.80 38.44 47.75 18.46 0.00 54.56 8.90 64.09 60.31 65.66 30.87 30.87 36.70 22.96 25.61 28 I4_AR4 ActiveIntronRegion 0 10.58 5.92 4.14 4.99 19.60 1.02 8.84 6.18 2.55 4.49 1.07 3.29 5.71 3.78 1.10 3.30 0.32 3.41 2.04 1.92 2.44 2.33 3.26 29 I4_SR4 SilentIntronRegion 0 8.11 4.41 9.39 6.81 6.39 0.00 16.70 14.69 4.67 10.90 0.00 11.79 11.46 4.33 0.16 3.47 6.60 3.70 6.90 4.96 6.12 3.01 0.00 30 ER5a ExonRegion 0 26.17 24.10 26.03 33.73 28.34 25.85 18.58 21.73 35.83 31.14 30.58 18.83 7.44 62.41 31.15 42.61 49.81 79.84 23.03 32.02 50.09 35.78 26.40 31 E5_Da KnownBoundary 0 17.71 9.80 6.62 7.79 0.00 0.00 2.03 4.39 7.49 7.23 5.00 0.00 0.00 5.53 11.74 3.93 8.32 2.53 8.75 11.82 5.87 5.63 8.45 32 E5a_E5b KnownJunction 0 10.52 12.56 19.63 30.30 12.22 8.18 2.12 9.32 24.77 11.77 7.48 0.00 0.00 5.53 0.00 8.20 17.86 27.69 0.00 9.20 20.57 20.51 8.19 33 E5_Ab KnownBoundary 0 3.56 0.00 9.73 9.02 8.15 0.00 0.00 1.85 12.21 2.82 5.11 0.00 0.00 8.18 0.00 0.00 8.88 23.30 0.00 5.50 16.99 5.82 0.00 34 ER5b ExonRegion 1 19.75 14.91 13.48 19.08 13.38 15.89 6.62 10.37 28.00 21.03 16.75 5.77 4.69 51.97 13.54 17.83 25.31 40.03 19.11 22.69 35.26 29.17 21.54 35 ER5c ExonRegion 0 14.22 17.93 19.48 25.90 23.71 16.94 11.19 13.67 26.13 22.71 23.93 8.66 3.77 55.51 33.28 31.11 33.56 70.74 20.47 26.87 42.48 30.54 24.80 36 E5_Db NovelBoundary 0 3.78 21.25 4.67 10.75 3.57 18.40 16.69 7.06 14.29 27.37 8.63 6.30 13.64 15.13 11.00 4.02 8.42 17.16 4.80 0.00 14.33 26.27 12.38 37 E5b_E6a KnownJunction 0 10.30 16.12 17.71 25.94 22.75 13.63 14.35 9.61 18.89 14.64 33.85 6.30 6.82 41.62 39.43 41.78 31.98 51.44 22.68 19.81 34.72 23.76 29.79 38 I5 Intron 0 11.88 11.05 10.30 15.01 17.28 7.58 6.91 8.86 12.94 9.18 5.60 9.48 7.27 11.57 10.26 9.42 6.57 22.41 10.39 11.04 17.42 11.69 11.25 39 I5_SR1 SilentIntronRegion 0 11.42 12.70 8.43 15.57 20.94 8.47 8.09 8.65 13.80 9.54 5.97 11.19 11.56 12.46 10.10 11.05 10.58 22.80 13.87 11.04 19.47 13.68 13.95 40 I5_AR1 ActiveIntronRegion 0 11.99 11.31 6.39 13.60 25.45 6.03 9.78 7.53 13.84 6.71 5.67 9.01 7.45 13.19 10.84 12.75 3.89 27.21 12.79 10.80 21.20 12.41 12.44 41 I5_AR2 ActiveIntronRegion 0 12.25 9.58 13.37 15.11 11.20 7.41 4.88 9.55 11.92 9.81 5.27 8.23 3.61 10.25 10.21 6.82 4.20 20.39 6.58 11.17 14.35 9.77 8.55 42 E6_Aa NovelBoundary 0 3.04 6.38 10.94 17.65 35.57 11.64 2.12 14.70 14.53 17.00 12.00 6.00 0.00 7.00 0.00 7.69 11.78 23.34 8.19 14.13 16.49 2.82 4.01 43 ER6a ExonRegion 0 12.08 27.48 17.90 25.53 16.79 27.33 15.54 22.58 23.90 20.83 26.99 7.55 7.68 58.17 31.02 32.48 20.36 59.31 19.87 27.55 34.77 17.98 24.17 44 E6_Da NovelBoundary 0 3.78 9.47 6.68 16.15 19.78 15.67 0.00 2.09 14.38 12.97 9.69 0.00 0.00 22.19 8.90 3.67 0.00 35.48 18.26 14.51 8.22 25.17 24.41 45 E6a_E7a KnownJunction 0 9.56 46.04 20.82 39.99 27.25 13.00 10.73 19.84 28.12 12.28 19.95 0.00 0.00 38.97 19.28 43.24 20.57 61.35 21.84 27.80 41.02 5.02 26.80 46 I6 Intron 0 25.31 11.67 11.03 21.37 15.84 8.00 7.92 12.78 11.88 10.63 10.28 4.96 4.42 17.83 12.89 12.08 7.10 24.50 7.43 8.52 20.02 16.94 12.47 47 I6_AR1 ActiveIntronRegion 0 25.37 11.70 11.05 21.43 15.88 8.02 7.93 12.81 11.91 10.65 10.31 4.98 4.43 17.87 12.92 12.11 7.12 24.55 7.45 8.54 20.07 16.98 12.50 48 E7_Aa NovelBoundary 0 63.12 25.59 11.29 36.59 25.98 0.00 8.04 9.28 18.46 7.66 13.11 13.95 6.66 17.72 13.35 25.46 3.74 32.29 8.56 18.66 27.55 25.53 24.84 49 ER7a ExonRegion 0 61.40 36.80 26.42 48.55 52.34 26.48 18.63 26.81 31.87 22.11 28.60 9.65 10.86 59.09 41.65 33.21 33.68 62.50 20.64 41.31 43.45 29.10 24.83 50 E7a_E8a KnownJunction 0 130.39 60.71 42.04 93.96 109.76 48.78 32.95 59.89 52.78 30.76 36.43 13.50 12.50 104.19 57.11 35.80 42.36 97.50 26.17 54.39 31.07 21.92 42.25 51 ER8a ExonRegion 0 174.58 96.91 80.05 121.15 138.18 72.62 55.80 64.70 71.34 45.07 60.90 64.46 50.08 89.54 92.14 96.11 61.01 110.02 47.54 53.24 73.04 74.80 67.69 52 E8_Da KnownBoundary 1 247.38 95.51 67.24 123.29 167.23 36.97 54.23 74.88 96.18 39.49 34.17 55.67 86.36 113.07 135.98 46.06 64.24 53.43 34.92 67.24 102.43 55.17 52.84 53 ER8b ExonRegion 0 106.63 56.89 35.32 77.85 94.95 29.31 26.74 45.13 47.34 31.61 29.84 43.96 43.38 47.36 71.18 29.58 22.36 25.82 25.32 29.21 25.07 50.71 25.60