Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF444 Gene 0 36.24 29.20 123.13 51.84 19.94 28.57 13.63 49.70 51.66 79.16 101.71 33.86 32.19 136.96 154.51 99.50 91.58 110.44 80.04 63.91 101.06 46.59 60.76 2 337080 Transcript 1 31.24 32.01 25.97 14.12 13.61 26.73 24.61 13.26 17.24 22.20 149.78 8.98 3.72 40.19 90.35 102.25 109.12 119.59 82.90 43.64 58.27 47.40 83.36 3 412291 Transcript 0 3.78 9.93 64.07 28.60 4.07 22.83 6.36 24.19 26.62 34.03 30.69 17.41 13.64 45.85 93.83 36.23 19.64 40.42 37.55 16.87 28.66 20.57 10.93 4 391714 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 1 5.29 3.70 3.86 3.34 2.69 5.31 6.43 1.91 3.23 3.72 45.81 1.01 0.63 21.70 45.59 35.14 41.25 25.29 24.33 8.86 22.39 11.71 20.57 6 E1a_E2b KnownJunction 1 57.20 60.32 48.08 24.91 24.53 48.15 42.79 24.60 31.25 40.67 253.75 16.96 6.82 58.69 135.11 169.36 177.00 213.90 141.46 78.43 94.15 83.09 146.14 7 I1_AR1 ActiveIntronRegion 0 14.44 8.07 8.83 1.43 6.33 3.90 3.94 4.32 3.20 3.74 2.05 0.00 0.00 3.40 1.30 4.74 1.75 5.85 11.38 3.95 9.89 2.21 4.68 8 ER2a ExonRegion 1 5.08 10.57 10.54 4.09 3.75 8.07 5.56 6.22 4.20 7.80 42.52 0.87 0.94 13.64 37.14 21.99 34.99 32.15 26.76 11.49 20.27 13.33 20.56 9 ER2b ExonRegion 1 18.31 13.25 79.12 26.12 8.77 16.83 9.00 31.46 36.57 54.28 105.18 7.98 6.18 67.12 101.96 76.21 109.14 105.63 77.70 60.72 95.13 37.55 47.50 10 E2a_E3a KnownJunction 1 19.26 13.09 140.95 54.34 12.31 19.25 5.79 84.86 46.76 95.63 72.33 6.30 0.00 162.16 252.55 199.78 96.96 121.75 137.23 92.23 86.98 102.63 111.74 11 ER3a ExonRegion 0 13.27 20.21 90.02 25.32 7.94 17.76 13.03 31.09 32.55 64.14 70.87 11.71 9.89 97.17 120.79 67.62 62.58 72.16 51.08 50.12 85.11 28.65 49.93 12 E3_Da NovelBoundary 0 6.96 0.00 5.29 1.90 0.00 0.00 1.99 0.00 3.10 10.37 7.05 0.00 0.00 19.54 13.35 15.72 3.83 5.60 9.13 32.98 8.83 9.12 12.29 13 E3a_E4a KnownJunction 0 22.60 9.41 115.58 21.78 3.48 10.73 2.25 27.93 45.66 71.94 58.59 11.40 13.64 101.60 80.47 55.80 46.75 60.02 30.12 24.35 94.64 23.88 54.46 14 I3 Intron 0 10.84 3.89 6.68 2.86 3.77 2.89 2.53 2.75 4.87 9.81 9.46 9.99 7.46 16.27 12.84 12.38 13.38 19.60 8.60 17.24 19.47 6.33 8.60 15 I3_SR3 SilentIntronRegion 0 11.63 4.10 8.13 3.25 3.91 2.81 2.76 3.05 5.76 11.30 10.49 10.81 8.15 17.07 13.60 13.64 14.24 22.63 10.41 19.24 21.61 7.53 8.99 16 I3 Intron 0 19.28 15.37 20.05 18.78 16.27 12.04 6.37 12.27 13.66 10.67 15.01 14.18 9.48 21.76 17.85 22.19 13.58 22.66 17.82 23.07 18.33 12.67 15.00 17 I3_SR1 SilentIntronRegion 0 9.39 8.91 6.27 5.58 11.16 9.68 5.59 5.03 6.51 4.42 8.06 13.27 8.33 15.65 14.29 15.53 9.06 10.52 10.10 17.97 14.30 9.02 9.46 18 I3_AR2 ActiveIntronRegion 0 27.01 20.42 30.82 29.09 20.27 13.89 6.98 17.92 19.25 15.55 20.44 14.90 10.38 26.55 20.65 27.40 17.12 32.14 23.86 27.06 21.49 15.52 19.34 19 E4_Aa NovelBoundary 0 30.67 33.22 71.94 45.68 24.45 15.62 6.45 28.55 23.35 20.42 14.58 12.45 0.00 27.96 9.64 31.79 13.46 75.28 15.34 26.91 21.37 8.33 40.46 20 ER4a ExonRegion 1 43.42 22.03 178.15 49.18 14.78 25.99 7.79 61.24 59.58 103.00 150.87 47.35 10.97 163.80 162.07 102.77 96.82 141.62 85.10 69.86 150.03 57.50 68.62 21 E4a_E5a KnownJunction 0 32.38 18.02 137.87 33.23 14.69 19.65 1.94 49.12 76.97 69.36 86.23 24.31 18.34 112.90 107.55 70.92 51.71 76.03 63.81 39.56 64.00 45.13 34.66 22 E4a_E5b KnownJunction 0 3.78 9.93 64.07 28.60 4.07 22.83 6.36 24.19 26.62 34.03 30.69 17.41 13.64 45.85 93.83 36.23 19.64 40.42 37.55 16.87 28.66 20.57 10.93 23 ER5a ExonRegion 1 22.22 11.18 133.87 47.02 10.70 18.34 2.32 54.01 63.61 75.41 93.26 28.14 10.55 119.78 139.99 80.25 48.69 96.08 58.93 40.96 65.56 39.59 51.39 24 ER5b ExonRegion 0 34.84 32.06 134.86 53.40 15.45 28.97 11.31 53.55 55.49 89.84 97.08 35.41 23.00 164.23 182.07 114.82 90.00 128.53 74.09 57.93 101.80 45.39 63.09 25 E5_Da KnownBoundary 0 28.30 45.06 177.02 101.62 46.77 28.34 10.29 89.01 101.74 139.25 169.46 72.32 83.76 232.86 257.37 167.31 161.10 255.35 134.59 112.37 129.11 107.83 96.63 26 ER5c ExonRegion 0 59.34 42.64 161.27 82.03 37.27 42.54 19.82 69.94 72.09 98.89 125.48 55.56 68.13 175.45 187.03 123.40 114.16 131.09 112.42 89.23 121.82 65.32 76.18