Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RDH13 Gene 0 14.02 20.84 64.71 30.70 7.97 1.73 6.90 6.01 13.48 2.46 56.56 20.62 14.43 62.20 46.84 31.64 29.90 22.68 11.30 20.49 15.91 7.81 15.81 2 396247 Transcript 0 0.13 0.44 0.61 0.00 0.29 0.00 0.14 0.00 2.19 0.00 0.00 0.76 0.42 0.71 1.79 0.83 0.00 0.01 0.00 0.37 0.24 0.13 0.82 3 415061 Transcript 0 0.00 2.00 7.08 2.40 0.04 0.00 2.67 0.00 2.88 0.02 18.46 0.00 0.00 14.29 9.43 4.12 11.33 1.13 0.00 9.87 13.22 0.00 1.27 4 291892 Transcript 0 0.00 1.02 2.76 0.68 0.67 0.00 0.66 0.00 0.93 0.29 6.28 1.08 0.00 5.28 4.35 2.23 3.30 1.39 0.00 3.19 4.41 0.00 0.73 5 ER1a ExonRegion 0 0.52 0.00 0.52 0.00 0.00 0.00 0.00 0.00 2.64 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.47 0.00 0.51 0.72 6 E1a_E2a KnownJunction 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 2.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 0.00 1.77 0.66 0.00 1.17 0.00 0.58 0.00 3.33 0.00 0.00 3.03 1.68 2.83 7.14 2.59 0.00 0.05 0.00 1.02 0.96 0.00 2.56 8 E2_Da NovelBoundary 0 222.71 189.24 108.93 154.56 187.10 121.63 244.71 161.42 159.29 116.45 65.49 35.86 26.13 56.04 38.69 123.22 147.83 128.84 92.52 128.54 151.23 77.46 153.57 9 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E3_Aa NovelBoundary 0 0.00 2.70 7.78 6.16 0.00 2.84 0.00 0.00 7.44 0.00 7.37 0.00 0.00 0.00 0.00 0.00 9.26 9.41 13.84 2.88 2.78 0.00 0.00 11 ER3a ExonRegion 0 0.00 0.78 2.09 0.27 0.08 0.00 1.63 0.00 1.22 0.04 11.06 0.00 0.00 8.15 4.78 1.14 6.86 0.40 0.00 7.33 6.85 0.00 2.53 12 E3a_E4b KnownJunction 0 0.00 3.22 12.06 4.53 0.00 0.00 3.71 0.00 4.54 0.00 25.85 0.00 0.00 20.43 14.09 7.09 15.80 1.87 0.00 12.40 19.58 0.00 0.00 13 ER4a ExonRegion 0 0.00 1.02 2.76 0.68 0.67 0.00 0.66 0.00 0.93 0.29 6.28 1.08 0.00 5.28 4.35 2.23 3.30 1.39 0.00 3.19 4.41 0.00 0.73 14 ER4b ExonRegion 0 3.10 7.53 38.17 10.39 3.31 0.00 2.91 1.01 12.18 1.61 42.65 5.61 8.07 36.65 27.37 20.12 16.00 14.33 10.39 18.16 17.29 6.74 13.36 15 E4_Da NovelBoundary 0 0.00 0.00 21.70 16.12 0.00 0.00 0.00 2.26 4.95 0.00 0.00 0.00 12.99 4.59 4.45 0.00 4.30 2.36 0.00 7.80 0.00 0.00 0.00 16 E4a_E5a KnownJunction 0 3.78 0.00 39.50 15.98 0.00 0.00 2.25 5.09 9.00 1.29 43.96 6.15 14.45 36.97 15.45 11.36 22.35 27.07 14.40 22.18 14.58 13.47 21.43 17 ER5a ExonRegion 0 10.32 20.94 66.01 26.53 7.94 5.47 10.73 5.68 18.84 3.22 66.13 28.61 14.19 53.44 35.43 41.30 37.39 24.47 12.54 27.71 23.90 14.99 17.71 18 E5_Da NovelBoundary 0 6.82 2.76 16.74 11.42 4.07 0.00 3.62 0.00 0.00 0.00 5.26 17.26 6.66 2.47 4.45 0.00 12.72 9.16 0.00 5.69 0.00 0.00 0.00 19 E5a_E6a KnownJunction 0 10.00 8.88 86.81 32.20 0.00 0.00 2.25 7.64 33.94 0.00 62.86 12.60 6.49 54.98 38.45 47.51 41.89 32.21 13.18 25.82 21.00 5.33 19.63 20 I5 Intron 0 6.98 12.22 24.85 12.08 6.58 0.68 3.13 2.49 1.72 0.11 7.40 9.93 11.83 21.38 15.53 3.24 8.74 4.86 1.88 3.44 1.03 0.32 2.56 21 I5_SR1 SilentIntronRegion 0 8.85 14.04 25.34 13.06 9.24 0.49 4.48 3.25 1.46 0.11 5.13 10.06 14.17 12.27 9.92 4.74 8.33 6.56 1.90 3.53 0.88 0.28 3.51 22 I5_AR1 ActiveIntronRegion 1 3.37 15.12 13.61 7.69 2.84 0.00 0.70 1.37 1.98 0.00 9.30 0.00 7.96 23.30 14.81 0.00 14.03 3.12 0.00 2.26 1.17 0.00 6.24 23 I5_SR2 SilentIntronRegion 0 5.42 9.63 20.36 11.18 4.11 0.70 1.69 1.32 1.65 0.22 6.44 12.01 6.12 23.37 16.45 2.67 5.50 2.47 2.45 1.36 0.56 0.00 0.75 24 I5_AR2 ActiveIntronRegion 1 8.81 12.70 35.16 15.85 6.96 3.82 4.13 2.68 0.96 0.00 9.05 7.42 13.78 38.53 16.08 1.55 24.05 10.05 1.66 5.54 3.44 2.17 1.53 25 I5_SR3 SilentIntronRegion 0 4.69 9.77 30.37 10.88 3.96 0.34 1.96 2.38 2.72 0.00 13.92 10.96 14.27 37.25 29.99 1.65 7.32 2.38 1.77 5.90 1.22 0.39 1.63 26 E6_Aa NovelBoundary 1 9.11 12.37 91.39 31.40 8.15 0.00 6.76 6.57 4.11 0.00 29.48 0.00 41.23 77.46 8.90 0.00 31.04 7.92 0.00 11.57 0.00 0.00 10.67 27 ER6a ExonRegion 0 9.59 29.40 115.28 43.17 9.91 3.14 4.93 11.89 29.15 3.33 111.39 47.17 24.34 107.47 62.31 61.51 53.25 34.42 26.03 46.34 32.17 23.97 32.44 28 E6_Da NovelBoundary 0 14.52 24.27 89.23 37.16 3.82 0.00 2.25 2.14 0.00 0.00 35.96 18.16 19.32 46.27 37.70 3.16 17.48 25.83 0.00 14.51 0.00 0.00 0.00 29 E6a_E7a KnownJunction 0 14.15 6.18 122.32 37.76 7.89 4.54 1.68 15.20 25.40 0.00 78.65 18.46 15.10 60.92 39.68 60.67 47.78 39.75 20.42 32.79 25.82 11.70 30.82 30 E7_Aa NovelBoundary 0 17.56 18.68 105.88 63.59 4.33 0.00 1.94 6.33 2.78 1.67 34.17 16.96 38.96 116.90 55.26 0.00 17.39 19.03 8.94 13.04 0.00 0.00 0.00 31 ER7a ExonRegion 0 14.67 21.60 131.06 65.32 10.05 3.67 10.32 11.01 25.44 2.58 109.20 46.81 32.65 108.34 68.51 67.56 44.91 53.12 25.83 25.36 27.32 12.27 29.28 32 E7_Da NovelBoundary 0 6.67 37.16 81.19 36.26 4.07 0.00 4.20 4.11 5.18 0.00 11.90 18.31 5.84 68.52 48.95 3.59 17.67 14.14 3.67 15.40 0.00 0.00 0.00 33 E7a_E8a KnownJunction 0 9.78 8.95 65.82 17.78 4.07 0.00 8.04 4.85 8.36 2.93 44.96 5.40 28.73 43.73 31.40 10.85 17.48 38.01 20.42 17.26 20.51 2.57 22.88 34 I7 Intron 0 4.11 7.41 23.28 7.89 2.27 0.00 1.29 2.81 2.23 0.42 16.43 6.87 6.30 38.40 20.58 5.77 12.43 5.02 1.55 6.20 0.54 3.54 0.71 35 I7_SR1 SilentIntronRegion 0 5.04 12.75 14.03 4.99 1.28 0.00 1.89 0.11 0.17 0.00 9.86 11.90 9.20 41.42 21.72 1.53 6.69 4.94 1.52 5.23 1.05 2.01 0.00 36 I7_AR1 ActiveIntronRegion 0 5.56 6.25 36.27 13.71 0.00 0.00 1.39 3.94 2.71 0.90 31.80 14.73 8.99 55.97 26.56 7.69 27.33 5.18 0.00 14.37 0.00 9.84 1.54 37 I7_SR2 SilentIntronRegion 1 3.04 5.36 22.33 6.81 3.84 0.00 0.95 3.70 3.08 0.41 12.96 0.85 3.70 29.42 17.57 7.12 8.69 5.07 2.29 3.06 0.53 1.50 0.70 38 E8_Aa NovelBoundary 0 17.48 16.25 14.37 9.96 8.06 0.00 1.77 0.00 3.59 0.00 9.63 0.00 6.66 36.79 4.45 3.59 8.42 4.60 0.00 9.01 0.00 0.00 7.17 39 ER8a ExonRegion 0 10.02 16.11 57.77 28.86 4.83 3.67 5.22 2.36 11.36 3.81 57.93 24.36 16.60 57.96 52.79 47.58 32.10 30.67 10.77 17.52 29.92 6.80 27.96 40 E8_Da NovelBoundary 0 19.48 22.04 51.27 31.73 0.00 0.00 7.86 2.09 8.16 2.95 21.85 0.00 0.00 28.78 31.77 11.96 24.59 9.82 8.75 17.96 2.72 5.63 3.76 41 E8a_E9a KnownJunction 0 0.00 8.81 50.91 12.75 0.00 0.00 15.77 1.77 6.13 1.10 44.80 0.00 0.00 43.73 32.02 33.84 17.95 29.10 0.00 15.60 13.65 9.12 3.67 42 I8 Intron 0 5.60 9.73 17.48 9.30 3.81 0.37 2.56 1.05 2.44 1.04 11.02 4.74 5.78 28.84 13.81 5.14 7.06 7.01 2.59 5.20 3.59 0.85 2.09 43 I8_AR1 ActiveIntronRegion 0 5.83 12.41 25.90 14.79 5.27 0.72 3.39 2.03 3.99 2.02 14.84 6.37 5.81 33.49 18.48 9.94 9.10 10.49 3.14 7.11 6.51 1.64 2.31 44 I8_SR2 SilentIntronRegion 0 7.25 9.29 6.25 4.64 3.06 0.00 1.01 0.00 1.41 0.00 5.89 1.36 6.16 17.70 7.92 0.00 0.00 1.05 2.42 0.81 0.00 0.00 1.12 45 I8_AR3 ActiveIntronRegion 0 3.14 4.03 11.75 2.01 1.32 0.00 2.62 0.00 0.00 0.00 8.61 5.30 5.42 33.07 10.39 0.00 11.44 6.37 1.58 6.32 1.09 0.00 2.91 46 E9_Aa NovelBoundary 0 0.00 9.54 28.59 12.72 0.00 0.00 4.33 0.00 8.56 1.18 26.06 0.00 0.00 35.91 29.92 4.19 26.65 14.43 9.22 5.50 3.09 0.00 3.24 47 ER9a ExonRegion 0 22.32 30.08 74.39 37.54 11.30 1.26 9.04 7.76 13.09 3.18 61.29 20.14 15.59 76.53 61.86 30.99 36.02 23.79 11.08 23.66 14.58 7.22 15.56 48 IG3 Intergenic 0 15.22 20.15 35.44 27.18 10.98 1.10 8.66 2.66 9.51 1.25 17.79 17.30 14.99 19.28 15.67 12.21 14.42 10.53 7.18 13.41 10.59 4.81 10.44 49 IG3_AR5 ActiveIntergenicRegion 0 22.18 37.65 26.15 15.61 12.15 1.28 9.25 2.70 7.07 1.79 18.23 39.23 33.06 47.79 22.71 10.38 21.91 5.78 5.56 11.89 3.08 2.18 8.21 50 IG3_SR3 SilentIntergenicRegion 0 10.73 15.33 31.50 20.88 7.70 0.75 8.17 1.06 9.84 1.64 22.79 24.02 16.60 26.54 22.85 19.15 13.12 15.49 8.30 13.71 10.86 5.42 14.49 51 IG3_AR3 ActiveIntergenicRegion 0 20.09 22.58 44.39 37.77 11.85 1.39 10.28 3.98 13.94 1.50 19.04 18.29 12.96 17.10 16.98 13.68 17.96 13.56 9.27 16.04 17.13 5.61 12.64 52 IG3_AR2 ActiveIntergenicRegion 0 22.09 28.75 53.31 35.19 23.63 1.08 11.99 1.97 7.73 1.03 26.64 11.64 15.48 21.33 13.10 15.10 11.64 9.15 11.18 19.31 9.10 10.06 12.10 53 IG3_SR2 SilentIntergenicRegion 0 7.26 26.18 32.87 24.38 19.54 2.36 9.08 4.42 3.13 0.73 16.57 8.95 31.81 11.42 9.36 3.82 9.90 2.76 0.00 5.49 0.00 3.57 6.32