Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF773 Gene 0 25.46 34.94 43.35 20.33 26.49 8.75 11.36 17.48 19.09 23.47 17.23 16.48 13.09 21.00 24.07 22.57 22.55 18.31 18.55 26.30 16.83 15.61 17.76 2 430084 Transcript 0 6.67 0.00 7.36 3.66 0.00 2.78 0.00 6.94 9.35 9.08 7.79 0.00 0.00 9.89 9.89 3.42 11.97 6.30 4.80 15.66 23.17 11.45 3.93 3 282292 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 332030 Transcript 0 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.58 2.88 0.00 0.00 0.00 2.29 1.40 0.00 3.18 0.90 6.96 0.00 6.57 5.44 0.00 6.01 5 ER1a ExonRegion 0 6.56 6.24 3.90 1.76 3.94 3.98 1.21 0.80 6.47 5.34 3.99 1.28 0.00 5.77 6.52 9.04 6.83 5.16 4.84 6.14 7.91 5.29 4.94 6 E1a_E2a KnownJunction 0 0.00 6.05 3.34 1.30 0.00 0.00 0.00 1.93 8.56 4.70 4.79 0.00 0.00 2.47 0.00 0.00 7.95 3.23 3.67 3.07 0.00 0.00 0.00 7 E1a_E2b KnownJunction 0 6.67 0.00 7.36 3.66 0.00 2.78 0.00 6.94 9.35 9.08 7.79 0.00 0.00 9.89 9.89 3.42 11.97 6.30 4.80 15.66 23.17 11.45 3.93 8 ER2a ExonRegion 0 3.17 8.13 3.98 4.43 0.00 0.46 1.32 2.16 9.57 6.31 7.25 0.00 0.00 4.06 2.90 1.49 9.90 11.09 3.98 9.57 7.71 2.60 0.73 9 ER2b ExonRegion 0 2.89 4.39 13.37 7.30 1.08 1.80 1.06 5.34 15.35 7.89 9.83 4.64 1.56 16.37 14.92 14.55 11.74 22.76 7.41 22.56 17.02 14.01 9.84 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 5.60 9.16 11.88 6.22 9.27 5.76 4.03 11.54 19.70 11.58 8.30 0.00 2.04 16.49 8.21 7.03 13.44 17.06 13.67 17.17 18.10 5.60 9.55 12 E3_Da NovelBoundary 0 0.00 2.57 20.76 7.19 0.00 0.00 1.72 6.16 2.86 4.81 2.47 0.00 0.00 11.54 4.45 4.36 7.57 6.05 4.61 2.49 7.29 0.00 8.54 13 E3a_E4a KnownJunction 0 14.08 15.46 22.41 4.86 4.33 0.00 4.50 12.40 16.96 8.09 12.79 0.00 6.82 31.49 4.45 4.36 11.87 34.16 22.87 19.30 11.68 11.94 19.46 14 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 0.00 0.00 0.00 6.33 2.94 0.00 4.36 0.00 7.34 0.00 2.56 5.44 0.00 4.01 15 E3a_E6a NovelJunction 0 0.00 0.00 1.57 1.30 0.00 0.00 0.00 2.42 1.22 0.00 0.00 6.30 0.00 5.83 0.00 0.00 0.00 3.86 0.00 3.20 18.16 0.00 0.00 16 I3 Intron 0 3.90 3.43 13.44 4.21 1.44 0.56 1.92 1.78 3.10 2.75 1.48 3.01 1.25 2.18 3.10 2.96 4.56 6.49 3.91 2.61 2.20 1.28 2.93 17 I3_SR1 SilentIntronRegion 0 3.95 3.48 13.61 4.26 1.46 0.57 1.95 1.80 3.15 2.79 1.50 3.05 1.27 2.21 3.14 3.00 4.58 6.57 3.96 2.65 2.23 1.30 2.97 18 E4_Aa NovelBoundary 0 6.82 2.83 4.14 7.03 3.40 0.00 0.00 2.05 4.54 1.40 7.48 0.00 0.00 0.00 4.45 0.00 0.00 6.88 0.00 9.65 5.75 0.00 0.00 19 ER4a ExonRegion 0 31.35 43.17 53.37 24.92 32.86 10.34 14.09 21.23 21.49 28.24 20.45 20.60 16.43 24.11 28.58 26.40 26.45 20.07 21.93 30.13 18.22 18.11 20.77 20 E4_Da NovelBoundary 0 158.69 139.71 37.49 46.41 110.44 110.79 149.45 52.70 41.06 32.96 20.74 6.00 64.93 33.61 39.31 69.38 55.73 43.40 71.15 108.15 55.54 27.37 76.31 21 I4 Intron 0 6.26 7.52 2.70 3.00 13.84 5.42 6.85 0.00 0.00 0.00 2.86 7.91 2.85 12.50 15.77 10.98 7.32 2.73 14.13 7.86 8.14 4.62 4.34 22 I4_SR1 SilentIntronRegion 0 6.26 7.52 2.70 3.00 13.84 5.42 6.85 0.00 0.00 0.00 2.86 7.91 2.85 12.50 15.77 10.98 7.32 2.73 14.13 7.86 8.14 4.62 4.34 23 E5_Aa NovelBoundary 0 3.56 37.43 44.20 34.93 8.15 5.56 13.34 17.37 18.92 15.42 2.68 6.30 14.77 5.12 0.00 8.63 8.79 5.14 9.60 8.88 0.00 3.12 8.62 24 ER5a ExonRegion 0 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 2.81 2.67 0.00 4.23 3.30 7.80 0.00 7.19 7.44 0.00 5.22 25 E5_Da NovelBoundary 0 10.00 20.92 18.83 31.36 7.56 0.00 6.49 17.50 22.83 18.67 0.00 11.10 6.82 2.41 6.30 7.52 0.00 7.21 8.75 12.34 0.00 0.00 4.35 26 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 5.61 0.00 0.00 0.00 0.00 0.00 0.00 3.50 0.00 10.99 0.00 12.27 5.56 0.00 11.87 27 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.28 1.73 0.00 4.26 3.33 0.00 2.94