Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZSCAN18 Gene 0 70.75 111.23 248.41 118.25 87.36 109.58 51.60 170.55 201.63 159.93 0.03 3.30 0.67 3.66 1.49 31.96 8.06 186.10 77.10 89.24 59.26 56.22 50.85 2 433686 Transcript 0 0.00 8.87 0.14 0.00 0.00 10.92 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 3 402070 Transcript 0 49.79 158.33 124.71 43.62 165.03 161.50 67.88 112.38 121.03 92.41 0.00 5.70 0.00 0.00 0.00 48.02 12.81 203.95 238.78 63.47 53.68 49.17 109.95 4 421612 Transcript 0 6.70 2.73 10.23 13.42 5.86 2.56 5.03 13.60 17.85 13.48 0.00 0.00 0.00 1.21 0.00 1.97 0.00 15.57 4.75 8.15 13.62 4.13 5.76 5 240727 Transcript 0 1.62 2.75 10.28 1.52 0.89 0.27 1.92 2.76 4.17 4.21 0.00 0.00 0.00 0.00 0.00 0.82 0.30 10.45 3.47 3.26 1.41 0.00 3.19 6 ER1a ExonRegion 0 0.00 11.22 0.28 0.00 0.00 9.01 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 7 E1a_E3a KnownJunction 0 0.00 6.51 0.00 0.00 0.00 12.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 8 I1_SR2 SilentIntronRegion 0 1.31 13.55 4.24 0.97 12.13 28.31 12.18 2.31 0.83 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.36 0.81 0.00 0.35 0.66 0.00 9 ER2a ExonRegion 0 1.29 8.97 6.37 3.33 6.90 17.90 4.01 4.19 4.02 4.51 0.00 0.00 0.00 0.00 0.00 1.43 0.19 8.96 6.64 4.39 5.47 5.21 6.08 10 E2_Ab KnownBoundary 0 28.08 77.95 54.43 21.78 78.27 174.05 46.81 33.97 40.19 30.62 0.00 0.00 0.00 0.00 0.00 13.67 3.65 71.96 94.59 56.18 39.41 50.76 80.16 11 ER2b ExonRegion 0 47.56 123.65 103.14 42.55 121.82 200.60 78.67 77.88 84.88 84.07 0.00 3.97 0.00 0.00 0.00 34.51 8.80 187.96 175.73 77.25 52.40 61.46 114.20 12 E2_Da KnownBoundary 0 32.30 15.13 41.81 20.08 38.37 47.64 46.24 19.59 17.88 39.54 0.00 0.00 0.00 0.00 0.00 8.54 4.77 120.34 28.71 30.23 8.65 2.88 46.78 13 E2a_E3a KnownJunction 0 49.79 158.33 124.71 43.62 165.03 161.50 67.88 112.38 121.03 92.41 0.00 5.70 0.00 0.00 0.00 48.02 12.81 203.95 238.78 63.47 53.68 49.17 109.95 14 ER2c ExonRegion 0 5.38 11.20 26.79 11.60 14.47 17.16 11.09 8.73 9.55 22.92 0.00 0.00 0.00 0.00 0.00 4.53 1.12 52.30 21.11 12.59 3.92 2.40 23.09 15 E2_Db KnownBoundary 0 0.00 0.00 13.51 0.00 0.00 2.67 0.00 4.39 5.06 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.40 0.00 0.00 0.00 0.00 0.00 16 E2b_E4a KnownJunction 0 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 17 ER2d ExonRegion 0 0.63 0.82 13.34 1.14 0.00 0.82 0.69 3.13 5.37 6.14 0.00 0.00 0.00 0.00 0.00 2.46 0.91 21.96 7.21 4.53 4.24 0.00 8.10 18 E2c_E3a KnownJunction 0 0.00 3.35 13.22 0.00 0.00 0.00 1.77 2.55 2.81 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.46 0.00 3.13 0.00 0.00 0.00 19 I2_AR1 ActiveIntronRegion 0 8.92 12.76 9.13 6.69 11.92 2.39 26.60 7.86 10.85 8.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.10 3.76 9.09 2.54 0.00 5.07 20 I2_AR2 ActiveIntronRegion 0 8.84 16.40 42.22 26.44 18.97 10.15 12.60 31.03 32.36 14.11 0.00 0.35 1.50 0.13 0.00 8.95 1.92 33.47 15.48 21.91 5.35 3.24 7.42 21 ER3a ExonRegion 0 29.07 68.69 179.57 73.13 50.90 98.27 35.18 127.83 165.52 138.48 0.00 3.16 0.75 2.53 0.88 28.84 8.95 180.25 82.24 71.19 54.43 44.61 50.68 22 E3a_E4a KnownJunction 0 22.52 70.05 251.74 113.90 73.34 125.16 32.11 165.69 265.39 192.79 0.00 0.00 6.01 4.71 0.00 21.11 12.81 243.62 91.30 100.29 62.27 33.68 61.46 23 ER4a ExonRegion 0 27.73 55.53 198.62 82.85 54.92 107.17 41.88 135.51 189.68 149.90 0.00 0.00 1.31 3.17 2.09 34.06 7.64 205.99 86.41 93.62 62.25 41.89 62.57 24 E4_Da NovelBoundary 0 13.34 14.60 52.78 20.84 15.11 8.63 13.96 28.18 29.46 26.41 0.00 12.00 0.00 0.00 0.00 7.52 0.00 70.22 38.21 15.02 13.22 19.35 24.58 25 E4a_E5a KnownJunction 0 24.00 49.99 287.25 120.80 41.51 86.20 32.99 172.72 239.49 175.60 0.00 0.00 0.00 0.00 0.00 35.89 12.53 209.63 66.54 54.97 39.54 38.15 74.52 26 I4 Intron 0 18.23 31.36 56.33 34.67 23.91 27.02 15.77 41.92 34.06 40.45 0.00 1.41 0.82 0.93 0.22 16.28 2.81 50.32 35.92 18.44 18.52 26.92 28.74 27 I4_AR1 ActiveIntronRegion 0 18.27 31.43 56.44 34.74 23.96 27.07 15.80 42.00 34.13 40.53 0.00 1.41 0.82 0.93 0.22 16.31 2.81 50.42 35.99 18.48 18.56 26.98 28.80 28 ER5a ExonRegion 0 50.51 88.15 277.55 111.97 64.85 153.69 43.71 190.15 242.47 174.96 0.00 1.75 0.00 8.08 0.00 47.25 11.20 228.73 113.96 116.06 77.72 45.98 72.43 29 E5a_E6a KnownJunction 0 51.12 66.90 224.74 104.42 85.74 157.92 62.45 190.38 279.11 203.05 0.00 5.55 0.00 7.36 0.00 36.32 14.03 236.91 96.66 101.44 97.48 59.21 81.69 30 E6_Aa NovelBoundary 0 31.93 34.86 56.18 42.52 40.24 37.14 19.25 38.49 28.79 37.85 0.00 0.00 0.00 0.00 0.00 0.00 4.77 44.69 17.04 15.15 5.93 27.98 11.69 31 ER6a ExonRegion 0 53.16 79.39 281.70 113.25 38.24 133.64 43.09 194.07 251.88 194.21 0.00 5.55 0.00 4.35 1.01 26.17 8.56 270.81 90.95 91.74 75.08 57.95 60.67 32 E6_Da NovelBoundary 0 24.97 44.47 60.91 29.20 17.83 35.04 11.75 33.93 53.65 29.58 0.00 7.65 0.00 2.12 0.00 16.24 0.00 42.99 17.22 20.01 10.56 28.84 16.65 33 E6a_E7a KnownJunction 0 46.82 85.77 273.79 127.09 42.70 103.92 49.90 187.09 246.84 194.35 0.00 5.70 0.00 4.94 0.00 32.21 9.16 238.98 111.72 88.53 68.63 54.01 71.79 34 I6 Intron 0 33.11 22.24 71.56 37.77 31.61 40.68 18.92 42.97 46.86 49.38 0.00 1.34 0.62 0.86 0.65 19.21 2.11 47.58 26.19 18.17 13.36 23.45 27.89 35 I6_AR1 ActiveIntronRegion 0 33.21 22.31 71.78 37.89 31.71 40.81 18.97 43.11 47.00 49.53 0.00 1.35 0.62 0.86 0.66 19.27 2.11 47.73 26.27 18.23 13.41 23.52 27.98 36 E7_Aa NovelBoundary 0 44.90 35.32 88.82 42.75 82.34 33.90 23.89 49.41 45.72 42.71 0.00 0.00 0.00 4.53 0.00 27.69 0.00 52.89 16.09 20.58 20.26 18.86 30.05 37 ER7a ExonRegion 0 50.39 64.86 274.34 105.73 67.10 106.91 53.70 178.90 221.98 176.65 0.00 1.58 0.00 6.11 0.00 43.69 10.51 281.20 105.87 93.30 86.66 46.29 67.42 38 E7a_E8a KnownJunction 0 34.38 39.07 191.68 76.01 60.10 82.28 49.06 186.11 185.24 148.90 0.00 0.00 0.00 0.00 0.00 8.63 17.20 216.80 74.07 71.78 46.09 27.49 43.02 39 E7a_E8b KnownJunction 0 13.41 5.46 20.46 25.44 11.71 5.11 10.07 27.19 35.71 25.55 0.00 0.00 0.00 2.41 0.00 3.93 0.00 31.13 4.71 16.30 27.24 8.27 11.52 40 I7 Intron 0 14.34 8.33 43.99 18.45 10.77 7.92 4.84 15.35 25.90 20.88 0.00 0.00 0.00 0.68 0.00 3.54 1.97 34.03 8.33 12.85 6.90 7.29 7.89 41 I7_AR1 ActiveIntronRegion 0 14.38 8.35 44.12 18.50 10.80 7.94 4.86 15.39 25.98 20.94 0.00 0.00 0.00 0.68 0.00 3.55 1.97 34.13 8.35 12.88 6.92 7.31 7.91 42 E8_Ab NovelBoundary 0 19.41 7.37 78.56 28.87 6.37 28.90 8.21 56.39 71.93 55.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87.76 21.46 17.00 14.21 2.33 17.24 43 ER8a ExonRegion 0 31.75 44.23 179.21 73.60 53.51 69.68 32.11 145.62 169.83 143.08 0.00 1.08 0.00 1.62 0.00 19.32 14.85 206.49 72.47 74.47 53.99 24.48 55.06 44 ER8b ExonRegion 0 115.14 170.16 349.27 176.54 134.18 138.86 73.57 239.79 272.61 213.80 0.06 4.74 0.93 4.87 2.35 40.96 9.75 224.75 89.08 119.76 74.32 79.60 58.77 45 ER8c ExonRegion 0 4.23 4.07 4.29 3.41 2.68 0.00 3.31 2.59 4.32 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 3.19 2.13 0.00 0.00 1.47 46 IG16 Intergenic 0 8.43 17.40 11.73 7.35 16.39 4.92 5.56 13.34 20.42 11.56 0.00 0.16 0.10 0.10 0.00 0.23 0.00 26.21 4.94 13.48 3.32 2.59 3.81 47 IG16_SR7 SilentIntergenicRegion 0 44.02 37.49 7.80 12.14 38.77 13.79 13.31 14.00 19.97 8.41 0.00 0.00 0.00 0.00 0.00 4.79 0.00 17.70 10.48 11.89 2.50 7.80 16.09 48 IG16_AR8 ActiveIntergenicRegion 0 2.21 5.85 5.73 4.25 9.10 1.92 1.39 8.76 22.62 6.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.82 4.17 10.57 1.73 2.18 1.54 49 IG16_SR5 SilentIntergenicRegion 0 4.74 6.07 5.45 5.20 10.12 4.40 3.32 6.04 13.14 4.19 0.00 0.00 0.00 0.00 0.00 0.16 0.00 21.40 1.19 7.37 1.76 1.22 2.50 50 IG16_AR7 ActiveIntergenicRegion 0 3.95 10.18 9.61 3.27 11.58 0.62 3.37 12.89 22.80 7.83 0.00 0.61 0.00 0.00 0.00 0.00 0.00 34.29 1.62 9.75 1.50 1.59 4.49 51 IG16_SR4 SilentIntergenicRegion 0 7.10 12.06 5.07 5.34 11.27 4.48 4.12 12.33 19.38 5.64 0.00 0.00 0.00 0.13 0.00 0.00 0.00 19.51 2.90 9.47 1.48 1.80 2.11 52 IG16_SR1 SilentIntergenicRegion 0 16.06 42.47 31.16 15.89 30.65 10.03 11.79 27.32 33.49 32.79 0.00 0.34 0.44 0.23 0.00 0.14 0.00 44.87 12.77 30.49 9.03 5.50 7.06