Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF549 Gene 0 32.94 73.31 33.05 45.46 44.61 25.92 26.80 30.76 34.28 36.18 14.59 22.14 21.92 29.10 25.24 30.46 29.08 55.30 34.23 47.60 16.04 18.43 19.43 2 240719 Transcript 0 1.44 3.04 3.91 0.48 1.55 4.73 2.72 0.51 0.83 0.40 1.64 0.00 1.22 3.18 3.15 5.82 4.28 3.23 6.35 6.71 3.45 0.62 2.00 3 376233 Transcript 0 4.63 4.40 7.47 7.99 15.99 9.42 0.00 8.20 8.00 6.83 8.16 9.28 0.32 13.32 9.29 16.44 10.93 28.50 12.63 27.76 7.41 3.98 6.18 4 IG40 Intergenic 0 2.24 10.29 7.60 10.76 3.38 1.14 0.45 2.60 15.09 1.50 0.40 1.70 1.16 0.92 0.91 1.14 1.00 2.69 1.22 2.55 2.47 1.30 2.21 5 IG40_SR2 SilentIntergenicRegion 0 2.46 11.30 8.28 11.86 3.73 1.26 0.49 2.86 16.59 1.66 0.44 1.87 1.28 1.02 1.01 1.26 1.11 2.97 1.35 2.82 2.72 1.43 2.43 6 ER1a ExonRegion 0 2.88 6.07 3.68 0.97 3.10 9.46 5.43 1.03 1.66 0.80 3.28 0.00 2.45 6.36 1.98 7.28 8.56 6.45 12.70 13.41 6.90 1.24 4.00 7 E1_Ab KnownBoundary 0 6.37 6.58 9.17 3.63 3.74 17.60 13.34 4.72 5.76 1.67 4.47 0.00 0.00 2.47 8.90 28.28 24.40 35.36 20.71 30.49 9.95 2.57 3.59 8 ER1b ExonRegion 0 3.46 7.07 7.52 4.70 7.99 4.61 2.36 3.24 6.96 4.32 5.77 3.15 0.62 8.40 5.73 12.66 11.89 19.14 10.77 20.30 5.65 2.83 4.11 9 E1_Da NovelBoundary 0 0.00 0.00 6.39 3.70 0.00 0.00 4.46 2.01 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 24.25 0.00 11.12 3.15 0.00 0.00 10 E1a_E2a KnownJunction 0 3.78 3.35 13.96 9.02 11.21 4.54 0.00 4.07 8.62 6.21 12.85 0.00 0.00 16.48 5.07 22.30 13.28 24.25 14.21 20.71 8.59 6.18 4.01 11 E1a_E3a KnownJunction 0 0.00 0.00 4.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E2_Aa NovelBoundary 0 3.78 15.26 8.66 10.99 16.30 8.69 13.25 0.00 2.78 3.87 0.00 0.00 0.00 4.65 0.00 0.00 0.00 20.69 3.76 10.99 3.15 2.45 0.00 13 ER2a ExonRegion 0 4.18 3.91 8.45 7.51 16.81 8.09 0.00 8.42 8.33 6.70 6.69 9.55 0.96 13.70 8.70 14.63 10.24 32.36 10.70 27.17 8.19 2.62 6.33 14 E2_Da NovelBoundary 0 3.41 36.05 6.71 5.93 8.32 4.20 14.49 5.75 4.92 5.86 0.00 12.00 0.00 10.42 0.00 3.76 0.00 18.86 22.12 12.46 2.78 3.12 0.00 15 E2a_E3a KnownJunction 0 5.93 5.92 0.00 7.42 19.95 15.62 0.00 12.12 7.06 7.58 4.95 18.31 0.00 9.77 14.09 12.39 9.26 28.89 12.99 35.41 5.44 3.12 8.19 16 I2 Intron 0 5.42 11.59 10.54 13.41 8.88 8.66 5.87 9.02 13.08 13.32 2.93 3.71 6.20 7.68 5.20 10.61 6.79 30.28 14.13 15.12 8.74 5.49 9.53 17 I2_AR1 ActiveIntronRegion 0 2.93 10.20 1.07 1.05 7.00 1.81 3.40 1.26 5.05 6.49 0.00 2.60 4.15 6.17 0.00 6.41 4.10 14.57 3.28 8.15 2.55 6.37 1.59 18 I2_SR1 SilentIntronRegion 0 5.10 10.17 7.60 9.19 8.06 5.26 5.58 5.97 9.02 9.15 1.69 3.25 7.11 6.21 5.31 9.52 5.46 19.54 6.04 9.45 6.40 2.46 7.42 19 I2_AR2 ActiveIntronRegion 0 6.70 11.95 11.83 15.14 4.01 9.70 3.71 11.63 13.25 9.44 2.90 7.67 13.93 9.55 7.43 8.60 4.20 22.84 7.67 10.25 8.88 9.72 12.01 20 I2_AR3 ActiveIntronRegion 0 7.89 13.49 11.84 17.16 11.47 14.03 7.18 11.91 16.85 15.68 3.05 7.05 7.84 6.92 4.27 12.63 7.06 24.30 19.02 19.54 12.13 9.02 13.67 21 I2_AR4 ActiveIntronRegion 1 2.12 9.15 12.41 22.15 8.03 10.32 9.76 12.96 7.41 10.61 11.60 12.99 0.00 8.53 1.81 14.86 7.43 47.35 17.92 15.96 6.61 7.03 11.01 22 I2_SR2 SilentIntronRegion 0 5.50 13.50 9.85 14.74 8.73 9.69 6.01 10.78 12.87 13.64 4.12 3.09 4.66 7.24 7.52 12.11 8.11 40.68 19.05 18.35 5.29 6.19 9.38 23 I2_AR5 ActiveIntronRegion 0 3.93 9.95 14.23 14.76 8.86 7.44 5.70 8.74 15.39 16.98 3.26 0.98 4.44 9.95 4.73 9.80 7.68 40.45 16.40 16.05 12.07 3.59 9.15 24 E3_Aa NovelBoundary 0 12.45 12.17 8.93 18.71 4.07 10.96 10.02 16.92 14.15 15.53 4.42 0.00 0.00 4.94 4.45 15.89 21.32 39.34 20.99 21.35 16.37 5.39 18.35 25 ER3a ExonRegion 0 11.15 24.58 17.56 19.64 12.92 18.74 8.05 10.28 20.83 16.26 11.55 12.65 9.45 18.21 12.34 25.02 17.02 75.57 29.45 35.87 23.39 6.91 15.26 26 E3_Da NovelBoundary 0 0.00 3.16 5.88 12.72 0.00 2.38 2.16 6.65 5.90 8.11 2.42 12.15 0.00 0.00 4.45 3.76 0.00 43.15 9.41 12.14 5.56 0.00 12.80 27 E3a_E4a KnownJunction 0 7.26 49.79 9.37 13.95 3.65 22.32 4.50 5.79 22.51 24.95 16.85 36.76 0.00 25.66 0.00 19.91 9.16 45.35 20.71 25.44 38.61 14.21 19.72 28 I3 Intron 0 4.63 8.97 3.42 6.58 3.45 2.37 5.02 3.52 4.67 3.00 2.04 1.70 1.65 2.96 3.44 6.15 4.77 17.15 6.59 9.97 2.67 1.63 6.08 29 I3_AR1 ActiveIntronRegion 0 4.52 10.13 3.22 7.34 3.58 2.30 4.48 4.29 5.53 3.75 1.85 1.16 1.47 2.62 3.06 7.35 4.09 19.72 7.34 9.83 2.57 1.84 7.78 30 I3_AR2 ActiveIntronRegion 0 4.61 20.66 7.75 13.31 4.97 2.88 10.64 7.04 1.57 3.73 2.11 0.00 2.76 7.28 9.69 4.99 11.02 17.55 13.94 19.45 0.00 2.53 4.82 31 I3_SR2 SilentIntronRegion 0 6.04 7.62 4.23 5.79 3.34 3.27 5.43 2.30 4.92 1.52 2.76 4.59 2.21 3.32 4.26 5.30 5.89 16.07 4.54 8.73 4.32 1.11 5.24 32 E4_Aa NovelBoundary 0 16.60 12.89 9.70 15.42 7.81 6.93 3.53 8.09 3.07 1.07 4.63 0.00 0.00 2.47 4.45 8.12 0.00 27.07 0.00 5.75 6.12 0.00 4.27 33 ER4a ExonRegion 0 36.39 81.09 35.97 50.11 49.05 27.97 29.65 33.97 37.31 39.82 15.53 24.19 24.25 31.34 27.51 32.35 31.14 57.94 36.48 50.55 16.66 20.29 20.94