Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	TFPT	Gene	0	61.98	23.67	99.29	41.68	27.73	41.49	26.47	50.32	63.74	76.13	85.38	17.34	19.81	95.11	140.98	71.52	76.84	62.77	66.68	53.99	47.94	30.34	45.29
2	391759	Transcript	0	5.17	5.67	38.33	16.14	7.97	5.41	3.88	15.76	16.13	19.20	21.47	1.43	2.46	16.44	35.44	15.57	15.43	21.98	51.58	31.70	17.09	14.45	21.47
3	437524	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	339150	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	391757	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	420715	Transcript	0	7.11	0.00	0.00	1.27	0.00	0.00	0.00	0.00	6.28	1.45	7.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.27
7	391758	Transcript	0	0.09	0.00	0.04	1.69	0.00	0.00	0.00	0.17	0.09	0.62	0.06	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.18	0.00	1.27	0.00	0.00
8	ER1a	ExonRegion	0	0.00	0.00	0.37	1.84	0.00	0.00	0.00	0.00	0.49	1.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.39	2.02	0.00	3.65	0.00
9	ER1b	ExonRegion	0	16.66	8.09	51.09	17.57	1.98	30.44	20.45	18.95	24.80	25.47	25.50	1.86	6.74	11.86	34.59	22.42	18.46	23.15	56.24	40.41	13.80	14.92	30.15
10	E1_Da	KnownBoundary	0	6.22	8.81	81.25	13.98	3.90	4.71	4.06	23.08	30.76	15.02	6.79	6.30	0.00	5.12	15.82	17.26	8.42	27.03	22.59	38.86	11.92	8.63	10.93
11	E1a_E1c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1c	ExonRegion	0	13.39	15.57	114.63	46.59	23.91	16.22	11.45	47.28	47.91	56.50	62.48	4.29	7.38	49.33	103.83	39.08	46.30	65.95	152.34	93.08	51.26	39.70	64.42
13	E1_Ac	KnownBoundary	1	34.82	87.81	145.83	81.97	59.08	32.48	18.81	85.31	65.25	102.67	48.75	0.00	33.28	74.11	139.32	139.28	13.65	139.08	134.97	99.97	59.62	43.72	140.93
14	ER1d	ExonRegion	0	19.07	31.90	105.12	38.70	36.78	66.89	33.75	51.11	52.63	72.30	46.83	12.62	20.43	66.55	81.58	45.92	42.83	81.03	58.01	73.06	54.96	19.71	48.65
15	E1_Ad	KnownBoundary	0	33.34	22.23	53.40	18.71	34.55	89.72	48.40	29.45	28.44	39.68	19.48	11.10	0.00	14.89	18.05	32.30	32.35	45.68	15.25	18.34	35.27	7.65	18.95
16	E1_Ae	KnownBoundary	1	44.90	29.67	62.21	16.71	18.85	78.31	54.54	35.53	44.91	36.64	26.80	0.00	0.00	45.62	62.55	19.57	81.16	33.29	49.70	37.97	49.36	10.72	15.28
17	ER1e	ExonRegion	0	73.37	52.20	119.27	45.43	52.62	171.15	102.83	53.58	60.11	91.37	82.47	8.66	14.07	158.62	199.22	66.38	118.83	78.84	58.40	63.83	82.27	22.92	44.05
18	ER1f	ExonRegion	0	128.16	44.15	140.11	53.44	55.98	119.00	100.27	63.13	59.74	111.61	106.31	14.58	13.95	201.05	234.01	129.05	136.99	82.22	52.31	70.60	75.27	27.47	55.80
19	E1_Db	NovelBoundary	0	13.93	3.35	59.76	9.12	49.92	18.97	10.20	38.73	25.61	43.60	10.27	6.30	6.82	6.89	14.59	16.24	21.22	33.99	38.59	39.50	9.02	15.25	20.83
20	E1b_E3a	KnownJunction	1	231.97	59.07	163.18	72.48	86.84	54.06	93.80	76.07	59.46	137.83	124.82	38.11	6.82	180.71	208.67	177.99	118.47	79.22	39.44	79.26	62.27	33.62	82.97
21	I1	Intron	0	3.53	2.71	34.69	10.82	18.73	7.95	11.47	12.88	14.72	14.24	6.44	1.02	1.29	2.26	7.91	6.93	5.50	17.15	6.37	33.33	5.14	2.78	4.89
22	I1_SR1	SilentIntronRegion	0	3.55	2.73	34.92	10.89	18.85	8.00	11.55	12.95	14.82	14.34	6.49	1.03	1.30	2.28	7.96	6.98	5.54	17.26	6.41	33.55	5.18	2.80	4.93
23	E2_Aa	NovelBoundary	0	16.82	9.60	52.42	21.18	20.03	17.38	0.00	15.48	23.21	24.69	7.74	0.00	6.66	15.13	9.39	19.31	0.00	26.12	67.01	29.34	8.53	5.69	14.85
24	ER2a	ExonRegion	0	0.18	0.00	0.07	1.32	0.00	0.00	0.00	0.35	0.18	0.00	0.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.36	0.00	0.00	0.00	0.00
25	E2_Da	NovelBoundary	0	22.08	11.31	73.92	7.03	8.57	9.71	2.25	24.23	27.40	26.81	11.85	0.00	0.00	12.60	0.00	16.66	13.00	30.10	13.84	85.07	3.09	12.25	23.30
26	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	2.06	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	2.53	0.00	0.00
27	E3_Aa	NovelBoundary	0	0.00	8.42	41.75	8.22	11.12	2.10	4.02	24.89	21.82	23.64	5.21	0.00	0.00	4.59	22.13	3.33	13.37	30.84	21.37	26.21	5.07	5.57	3.59
28	ER3a	ExonRegion	0	82.46	31.81	149.20	57.15	35.34	40.68	26.01	75.97	73.30	112.71	101.01	21.25	32.07	141.09	179.38	101.20	92.82	97.17	62.47	78.62	55.96	33.24	64.29
29	E3_Da	NovelBoundary	0	20.60	12.70	49.55	11.15	19.52	7.38	15.85	29.94	29.28	39.00	2.68	11.85	0.00	16.19	10.38	7.43	0.00	22.80	0.00	17.07	2.78	0.00	3.33
30	E3a_E4a	KnownJunction	0	162.10	35.06	145.59	77.41	52.38	75.92	25.31	63.91	61.86	101.22	76.07	38.11	49.35	119.08	182.95	107.41	63.11	97.79	88.38	45.96	27.24	31.60	39.01
31	E3a_E5a	KnownJunction	0	7.11	0.00	0.00	1.27	0.00	0.00	0.00	0.00	6.28	1.45	7.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.27
32	I3	Intron	0	21.26	16.76	39.99	23.02	19.30	8.50	10.91	17.25	16.12	20.69	4.48	5.51	3.98	3.13	15.78	16.08	9.35	17.28	18.87	25.76	7.38	4.83	8.32
33	I3_SR1	SilentIntronRegion	0	21.37	16.85	40.19	23.13	19.40	8.55	10.97	17.34	16.20	20.80	4.50	5.54	4.00	3.14	15.86	16.16	9.40	17.37	18.97	25.89	7.42	4.85	8.36
34	Ix	Intron	0	17.35	6.95	41.58	23.81	23.76	22.75	14.77	31.38	16.34	17.12	10.12	9.10	9.11	15.70	30.87	24.70	13.15	27.70	15.96	30.52	11.29	9.01	12.70
35	Ix_SR1	SilentIntronRegion	0	17.43	6.98	41.76	23.92	23.85	22.86	14.84	31.52	16.42	17.20	10.17	9.14	9.15	15.78	31.01	24.81	13.21	27.82	16.03	30.66	11.34	9.05	12.75
36	E4_Aa	NovelBoundary	0	0.00	0.00	31.02	18.98	7.13	22.15	0.00	4.11	10.07	12.30	0.00	0.00	0.00	0.00	4.45	3.59	13.93	10.61	25.22	6.52	6.12	3.12	17.84
37	ER4a	ExonRegion	0	88.06	29.10	115.36	58.01	40.55	49.62	36.59	59.77	82.51	94.26	149.49	32.50	41.09	124.49	203.09	101.76	123.81	75.73	92.51	47.80	55.56	36.24	31.93
38	E4_Da	NovelBoundary	0	12.82	6.18	10.79	18.58	4.16	0.00	7.60	6.45	6.11	13.00	6.69	6.30	6.49	4.89	0.00	16.41	12.72	15.55	12.05	6.52	3.09	6.25	0.00
39	E4a_E5a	KnownJunction	1	192.26	27.82	127.17	53.67	23.17	24.25	35.95	65.02	124.80	94.85	202.16	18.46	27.27	134.50	195.19	45.63	156.52	63.80	37.27	35.15	62.15	44.33	28.26
40	Ix	Intron	0	47.49	13.48	20.49	22.79	30.02	10.29	20.93	19.70	22.53	18.30	8.87	11.30	3.94	15.59	25.33	39.41	10.10	14.06	14.62	18.45	5.62	3.19	16.47
41	Ix_AR1	ActiveIntronRegion	0	48.42	13.74	20.87	23.22	30.61	10.46	21.36	20.11	22.96	18.64	9.03	11.53	4.02	15.91	25.82	40.21	10.31	14.35	14.92	18.80	5.71	3.25	16.81
42	E5_Aa	NovelBoundary	0	138.99	23.02	58.51	65.89	12.14	5.45	32.64	35.78	31.83	32.21	20.90	6.30	34.09	25.43	56.25	58.79	45.35	49.16	53.74	53.31	28.54	10.84	39.95
43	ER5a	ExonRegion	1	100.11	57.87	104.19	52.98	21.60	28.24	34.74	64.25	112.52	97.39	156.37	34.33	14.54	167.33	214.32	75.92	144.91	56.81	46.10	48.21	58.52	56.37	45.94
44	E5_Da	NovelBoundary	0	32.15	9.67	51.24	22.61	19.02	9.65	7.55	40.75	19.30	56.71	4.79	0.00	0.00	13.01	8.90	33.58	13.65	30.22	26.82	23.78	7.78	8.88	3.59
45	E5a_E6a	KnownJunction	0	43.56	48.15	128.14	69.16	26.74	46.45	55.73	59.31	100.58	89.40	83.34	41.56	17.04	151.51	212.62	111.34	62.37	62.80	67.30	49.92	52.14	48.44	62.57
46	E5a_E6b	KnownJunction	0	0.00	0.00	0.00	2.06	0.00	0.00	0.00	4.56	0.00	7.04	0.00	0.00	0.00	2.30	4.82	0.00	0.00	0.00	0.00	2.49	0.00	3.12	0.00
47	E6_Aa	NovelBoundary	0	21.19	6.31	28.27	17.95	7.30	10.90	6.23	12.03	10.36	14.56	7.32	6.30	6.17	2.47	17.68	15.64	13.00	23.30	19.01	14.51	3.15	6.06	15.11
48	ER6a	ExonRegion	0	49.24	30.02	126.02	64.88	32.88	48.93	47.14	63.86	99.33	100.26	105.80	18.91	15.55	144.63	205.76	84.24	66.37	63.12	80.72	55.49	52.19	34.76	62.37
49	E6_Ab	KnownBoundary	1	123.58	27.17	174.30	89.90	38.96	61.50	51.45	85.68	123.26	134.69	151.78	6.30	27.92	160.75	228.32	93.99	93.41	76.36	140.15	70.88	74.13	41.39	53.44
50	ER6b	ExonRegion	0	102.80	14.92	123.66	60.04	49.42	68.55	28.95	69.96	106.58	109.50	137.30	35.35	38.14	141.80	234.19	137.96	112.15	92.70	94.90	49.70	65.62	45.97	60.07
51	E6_Da	NovelBoundary	1	39.49	16.05	102.86	44.38	23.43	18.57	8.79	65.31	82.70	91.68	142.19	13.05	26.13	89.71	145.62	54.00	129.03	45.10	98.73	49.47	59.62	56.03	41.83
52	E6_Dc	NovelBoundary	0	0.00	2.57	11.92	4.83	0.00	2.56	1.81	3.66	8.19	8.97	2.37	0.00	0.00	2.35	0.00	0.00	7.95	19.03	0.00	2.81	2.35	0.00	0.00
53	E6c_E7a	KnownJunction	1	21.63	24.54	58.34	29.70	7.72	12.61	4.33	52.70	88.16	75.13	149.51	18.46	0.00	109.01	119.04	31.44	144.65	16.95	15.53	19.56	89.82	40.41	36.19
54	ER6c	ExonRegion	1	22.88	19.85	66.29	33.49	10.07	15.63	5.61	56.05	80.93	80.88	162.09	18.55	7.82	100.62	121.02	45.71	148.54	32.56	60.67	30.60	84.58	53.97	30.62
55	ER6d	ExonRegion	1	14.82	22.37	52.69	25.89	5.35	10.09	3.97	48.40	75.96	72.83	144.00	12.99	4.69	98.26	108.80	32.69	132.04	17.55	27.08	21.28	80.44	34.38	23.49
56	Ix	Intron	0	41.79	6.07	35.28	15.58	17.49	13.55	10.34	19.76	18.05	23.55	11.81	6.62	14.54	12.08	24.15	22.38	13.13	29.36	24.44	25.09	15.65	11.54	21.28
57	Ix_AR1	ActiveIntronRegion	0	51.49	8.50	42.30	16.92	19.90	11.35	11.36	25.78	22.04	25.88	12.59	4.65	18.37	9.86	19.47	22.29	10.96	31.82	20.87	26.87	17.71	5.49	18.24
58	Ix_SR1	SilentIntronRegion	0	27.19	2.33	24.73	13.68	13.96	17.19	8.91	10.58	12.04	20.22	10.75	9.81	8.74	15.73	31.81	22.81	16.69	25.91	30.41	22.64	12.65	21.21	26.35
59	E7_Aa	NovelBoundary	0	37.93	21.38	64.43	32.53	42.53	12.32	18.50	26.16	36.34	50.50	12.74	7.65	0.00	38.02	17.80	19.91	12.44	45.56	44.33	29.66	17.17	10.84	27.83
60	ER7a	ExonRegion	0	84.60	17.62	36.96	13.65	14.13	22.90	15.73	19.21	44.09	40.56	58.11	12.08	5.42	52.03	109.20	40.09	71.07	15.08	25.98	12.56	37.63	18.94	15.20
61	ER7b	ExonRegion	0	2.12	2.03	0.82	0.00	0.00	0.00	1.32	0.58	2.06	0.38	2.58	0.00	0.00	0.54	11.61	10.90	0.00	0.00	0.00	0.00	0.00	0.00	2.94
62	ER7c	ExonRegion	0	2.12	1.45	0.00	0.00	0.00	0.00	0.19	0.00	0.00	0.00	1.93	0.00	0.00	0.00	2.49	7.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00