Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF550 Gene 0 38.75 45.24 47.32 38.74 43.69 24.90 26.25 29.97 40.68 39.93 38.36 55.92 54.83 43.21 29.45 38.63 32.61 36.73 35.63 28.81 19.42 20.83 16.66 2 447310 Transcript 0 26.44 29.48 26.10 21.92 21.51 21.93 9.38 12.48 15.89 14.88 21.75 17.43 37.28 27.66 17.65 22.80 18.08 15.09 17.24 15.21 9.04 10.28 7.90 3 376230 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 457177 Transcript 0 13.04 16.44 32.41 3.30 14.18 4.83 14.84 12.90 13.31 11.20 6.95 18.01 0.00 3.00 4.45 6.92 3.83 6.80 4.80 0.00 0.00 15.19 3.67 5 344222 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 325134 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 0.76 0.00 0.00 3.16 0.00 1.17 1.17 0.48 0.59 2.11 0.15 0.00 0.00 0.97 1.28 4.04 1.45 2.29 1.02 1.11 0.00 0.67 3.76 8 ER1b ExonRegion 0 14.05 13.59 10.05 5.61 2.24 11.59 5.74 9.45 13.30 14.12 22.59 3.22 1.46 20.53 9.70 26.73 24.89 34.33 31.23 10.57 18.95 14.31 11.52 9 E1a_E2a KnownJunction 0 0.00 9.01 18.89 7.13 0.00 0.00 0.00 14.01 22.40 31.59 28.11 0.00 6.82 23.96 9.64 19.31 50.02 26.86 34.54 16.23 35.40 5.45 12.89 10 I1_AR1 ActiveIntronRegion 0 4.63 8.89 14.37 20.71 5.46 4.28 3.09 8.27 16.90 7.47 0.28 2.04 1.13 4.01 2.09 2.17 3.85 13.65 3.25 5.90 0.32 0.30 0.43 11 E2_Aa NovelBoundary 0 0.00 2.89 26.23 20.61 12.48 7.55 8.08 3.74 8.80 11.98 0.00 0.00 0.00 3.00 0.00 0.00 0.00 35.48 4.42 2.75 0.00 2.57 4.35 12 ER2a ExonRegion 0 2.00 10.02 23.46 23.68 8.53 2.43 3.62 17.79 34.44 31.48 28.31 4.06 3.47 34.04 15.28 49.03 30.75 54.79 50.39 24.39 20.28 25.31 20.58 13 E2_Da NovelBoundary 0 14.15 3.09 14.67 18.85 0.00 0.00 14.62 8.26 15.08 10.64 0.00 0.00 0.00 2.47 5.32 4.19 0.00 14.59 3.86 8.82 0.00 0.00 0.00 14 E2a_E3a KnownJunction 0 7.56 2.83 15.46 12.85 4.33 11.24 14.26 19.84 36.08 21.57 36.06 18.16 6.82 14.77 4.45 32.64 11.97 46.47 3.76 25.69 26.13 11.02 26.72 15 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 16 I2_AR1 ActiveIntronRegion 0 5.97 5.61 12.50 8.11 6.77 2.42 2.51 6.15 9.22 6.52 0.00 1.57 1.70 1.02 3.83 2.50 0.00 14.68 5.03 5.53 1.94 0.00 0.65 17 E3_Aa NovelBoundary 0 13.85 9.27 14.99 3.63 4.16 0.00 16.16 14.79 12.41 10.26 0.00 7.50 0.00 7.30 6.30 0.00 8.70 12.68 0.00 0.00 3.15 0.00 0.00 18 ER3a ExonRegion 0 10.83 24.15 23.56 17.58 13.38 27.49 18.33 17.12 37.59 32.30 30.79 12.13 19.59 37.57 16.20 32.72 32.91 41.59 16.89 28.61 39.97 5.49 14.47 19 E3_Da NovelBoundary 0 3.48 13.09 14.16 13.05 4.33 0.00 3.89 14.66 10.71 8.06 0.00 0.00 0.00 7.18 10.51 0.00 4.21 19.73 9.32 2.68 0.00 2.94 4.10 20 E3a_E4a KnownJunction 1 0.00 26.11 28.21 12.95 10.44 11.58 25.48 15.24 33.28 27.26 40.59 0.00 40.91 65.40 13.35 34.86 50.21 37.10 22.12 9.01 35.15 0.00 8.02 21 ER4a ExonRegion 0 28.24 32.91 44.31 30.09 39.15 23.73 24.97 28.13 41.96 42.77 56.09 54.75 54.75 59.83 28.23 57.68 45.04 61.37 52.32 32.03 32.08 22.45 23.65 22 E4_Da NovelBoundary 0 0.00 11.64 11.12 11.55 0.00 5.28 12.01 10.51 16.17 5.94 17.00 31.51 33.28 2.47 0.00 3.50 0.00 7.09 0.00 11.12 0.00 0.00 7.51 23 E4a_E5a KnownJunction 0 3.48 3.09 16.32 7.96 8.40 10.56 8.57 6.57 13.40 2.69 30.74 37.06 34.09 45.09 24.11 11.36 26.74 6.47 18.45 2.43 5.56 9.37 7.85 24 E4a_E6a KnownJunction 0 13.04 16.44 32.41 3.30 14.18 4.83 14.84 12.90 13.31 11.20 6.95 18.01 0.00 3.00 4.45 6.92 3.83 6.80 4.80 0.00 0.00 15.19 3.67 25 I4 Intron 0 6.48 21.56 13.18 18.19 17.12 11.06 10.77 9.30 14.89 11.09 4.59 15.07 16.53 8.90 4.50 6.11 5.43 7.44 6.70 12.54 1.91 6.00 6.17 26 I4_SR1 SilentIntronRegion 0 6.49 21.60 13.21 18.22 17.15 11.08 10.79 9.31 14.91 11.11 4.60 15.09 16.56 8.91 4.51 6.12 5.44 7.45 6.71 12.57 1.92 6.01 6.18 27 E5_Aa NovelBoundary 0 6.82 30.19 24.81 29.10 15.45 13.74 1.94 19.51 27.23 18.88 0.00 11.70 26.46 10.95 0.00 3.50 0.00 20.81 20.71 15.08 0.00 10.96 7.51 28 ER5a ExonRegion 0 23.73 33.72 20.25 21.46 23.94 16.40 10.72 21.44 22.43 19.37 33.05 36.18 33.60 47.86 18.67 36.37 22.01 26.07 20.38 12.29 9.96 10.84 12.03 29 E5_Da KnownBoundary 0 56.16 101.30 25.87 28.47 44.82 5.11 8.26 28.46 29.80 24.15 45.70 18.16 33.60 41.50 19.28 49.56 18.33 28.73 17.41 6.39 8.40 34.66 19.97 30 E5a_E6a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5b ExonRegion 0 31.18 47.92 32.12 31.02 27.40 16.20 17.09 24.95 24.92 25.76 21.54 28.56 39.51 33.37 24.78 38.33 23.26 24.05 26.48 24.29 14.99 14.51 15.80 32 E5_Db NovelBoundary 0 20.60 25.52 50.23 18.35 7.22 29.47 11.26 17.87 13.48 5.78 14.53 5.40 6.82 52.21 54.39 12.30 18.42 8.95 3.58 3.26 0.00 9.92 4.35 33 E5b_E6a KnownJunction 0 21.71 11.05 20.08 12.82 15.62 27.65 1.68 0.00 6.86 4.00 21.95 6.30 35.06 21.96 10.51 7.26 12.90 6.14 8.00 6.14 3.09 6.06 0.00 34 I5 Intron 0 33.68 21.41 28.60 17.05 30.52 15.63 20.41 12.91 15.68 13.49 18.17 23.46 17.91 23.82 12.15 16.39 20.68 9.91 8.38 11.73 3.31 7.31 6.62 35 I5_AR1 ActiveIntronRegion 0 33.84 21.51 28.74 17.14 30.67 15.70 20.51 12.97 15.75 13.56 18.26 23.57 18.00 23.94 12.21 16.47 20.78 9.96 8.42 11.79 3.33 7.35 6.66 36 E6_Aa NovelBoundary 0 80.83 26.64 31.87 36.23 43.21 43.50 41.07 12.20 16.64 23.61 18.90 30.31 19.80 16.54 14.09 19.65 13.09 2.03 4.42 15.21 0.00 11.45 3.33 37 ER6a ExonRegion 1 66.25 70.03 73.15 63.44 71.77 35.91 41.01 41.37 55.44 53.14 31.43 89.04 81.56 32.91 40.65 20.09 27.25 16.65 26.09 34.54 8.67 26.01 11.23