Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF446 Gene 0 12.19 16.73 82.02 25.06 14.40 30.26 8.53 42.98 45.51 66.48 25.62 5.45 7.30 34.54 53.33 35.48 26.92 46.98 43.94 30.75 51.89 28.65 29.06 2 391694 Transcript 0 7.02 5.89 35.08 9.29 5.34 9.99 2.69 12.84 24.70 19.19 11.58 2.35 2.40 16.64 29.56 18.84 8.96 17.93 25.88 10.00 17.20 13.02 13.89 3 335841 Transcript 0 6.74 23.55 99.67 21.24 31.41 32.42 2.16 55.04 35.53 64.74 16.64 7.65 0.00 24.84 26.82 35.63 9.54 43.82 60.71 17.71 40.03 29.76 43.02 4 IG34 Intergenic 0 10.94 16.29 35.86 16.84 19.03 29.00 10.97 38.76 30.34 62.76 12.59 5.57 6.53 13.77 23.90 15.31 10.04 35.72 38.06 20.69 15.71 11.94 13.16 5 IG34_AR1 ActiveIntergenicRegion 0 20.38 23.97 43.10 27.64 25.20 32.19 19.38 51.77 35.60 62.31 17.51 11.19 6.62 14.08 22.20 20.33 14.08 30.15 46.86 25.19 16.53 12.41 12.30 6 IG34_SR1 SilentIntergenicRegion 0 13.58 17.45 43.30 19.77 17.37 37.59 17.82 49.48 39.63 85.74 16.66 4.68 12.00 14.15 28.19 23.03 13.63 54.10 52.44 22.53 22.61 15.69 17.98 7 IG34_AR2 ActiveIntergenicRegion 0 9.11 14.88 33.99 14.74 18.15 27.70 8.93 35.60 28.63 60.83 11.40 4.70 6.02 13.69 23.82 13.78 9.04 35.06 35.29 19.78 14.96 11.54 12.88 8 ER1a ExonRegion 0 4.23 2.69 11.39 1.03 7.09 4.62 0.98 4.04 4.41 3.77 16.64 2.53 4.87 7.11 16.69 2.93 10.25 9.43 18.33 7.65 38.81 5.55 10.22 9 E1a_E2a KnownJunction 0 0.00 0.00 22.62 1.73 0.00 11.13 0.00 10.27 6.68 7.36 14.69 13.95 12.99 2.47 10.63 8.72 27.30 7.59 4.61 9.52 5.56 0.00 0.00 10 I1 Intron 0 1.92 2.00 11.19 4.15 2.02 3.05 2.10 8.19 6.27 8.02 9.36 6.28 3.35 9.86 18.22 6.75 7.24 11.47 9.64 8.53 4.84 3.15 6.44 11 I1_SR1 SilentIntronRegion 0 1.93 2.01 11.24 4.17 2.03 3.07 2.11 8.22 6.30 8.05 9.40 6.30 3.36 9.90 18.30 6.78 7.28 11.52 9.68 8.57 4.86 3.17 6.47 12 E2_Aa NovelBoundary 0 0.00 5.92 33.12 14.22 0.00 0.00 0.00 17.83 14.73 8.86 12.63 6.00 6.49 17.60 13.97 8.72 4.77 22.47 26.45 21.54 0.00 8.70 8.45 13 ER2a ExonRegion 0 6.39 16.16 72.63 19.22 15.60 28.03 9.53 36.15 27.84 51.35 28.40 8.09 6.57 31.84 47.87 29.12 33.12 52.14 47.23 31.45 52.95 26.43 26.40 14 E2_Da NovelBoundary 0 13.34 5.99 21.35 24.37 16.55 24.36 2.16 10.97 16.58 14.18 22.74 0.00 6.17 9.89 28.68 8.63 19.07 31.63 21.08 28.12 6.30 0.00 0.00 15 E2a_E3a KnownJunction 0 12.97 24.14 103.49 27.94 15.62 51.33 10.25 36.60 44.56 66.30 34.54 6.30 13.64 27.61 47.84 42.04 27.77 51.94 38.40 37.71 48.62 37.35 51.47 16 I2 Intron 1 0.00 1.36 0.00 0.00 3.59 2.46 1.78 0.00 0.00 0.00 6.49 0.00 5.37 1.67 12.37 5.98 6.65 2.48 8.55 5.71 1.45 1.40 5.91 17 I2_AR1 ActiveIntronRegion 1 0.00 1.40 0.00 0.00 3.69 2.50 1.82 0.00 0.00 0.00 6.66 0.00 5.51 1.71 12.66 6.15 6.82 2.55 8.78 5.87 1.49 1.41 6.07 18 E3_Aa NovelBoundary 0 9.78 3.35 21.94 4.86 8.66 8.23 4.50 8.79 9.32 7.60 11.74 0.00 6.82 14.24 18.91 15.98 0.00 25.25 3.48 8.05 10.38 16.41 3.50 19 ER3a ExonRegion 0 15.91 21.67 114.15 33.34 21.29 40.53 11.16 54.63 52.36 91.79 42.04 6.20 15.80 49.01 69.63 46.98 50.57 73.63 70.82 42.50 87.26 41.98 41.36 20 E3_Da NovelBoundary 0 14.37 0.00 29.86 11.49 0.00 12.78 6.27 18.52 19.36 6.50 14.90 0.00 5.68 16.89 19.53 16.06 13.56 19.32 25.69 11.70 17.11 0.00 4.27 21 E3a_E4a KnownJunction 0 8.82 23.75 127.17 31.76 15.53 25.61 6.09 67.94 57.20 85.37 41.33 0.00 12.50 30.61 75.16 39.73 45.35 68.52 90.92 44.17 79.75 41.58 50.11 22 I3 Intron 0 4.15 2.39 18.99 8.37 3.15 5.04 3.12 14.65 13.36 6.70 10.24 2.15 5.30 11.13 20.42 13.99 11.01 11.90 13.12 7.51 6.92 3.27 10.37 23 I3_AR1 ActiveIntronRegion 0 4.18 2.41 19.14 8.43 3.17 5.07 3.14 14.76 13.46 6.75 10.32 2.16 5.34 11.22 20.56 14.09 11.09 11.99 13.22 7.57 6.97 3.29 10.45 24 E4_Aa NovelBoundary 0 3.78 2.76 46.27 19.81 0.00 2.50 0.00 15.03 12.79 18.27 21.85 0.00 6.33 19.31 58.10 23.24 8.23 26.53 13.74 17.07 13.71 10.35 16.05 25 ER4a ExonRegion 0 16.82 33.29 118.86 28.28 13.44 46.10 8.12 58.93 50.95 91.60 33.25 11.39 22.12 47.29 66.45 58.16 36.90 76.44 74.57 43.52 77.45 41.03 38.70 26 E4_Da NovelBoundary 0 6.67 6.05 47.57 10.16 7.47 0.00 4.33 12.57 14.84 5.94 11.58 17.56 12.66 14.77 23.36 11.96 21.22 21.22 21.55 18.41 9.20 0.00 7.85 27 E4a_E5a KnownJunction 0 12.22 17.83 111.79 17.35 16.47 56.50 5.70 60.26 43.37 79.86 11.79 0.00 12.99 39.97 47.22 16.32 21.97 69.60 32.00 25.95 68.57 22.72 11.27 28 I4 Intron 0 8.67 9.40 28.55 12.61 7.54 7.51 6.30 19.74 15.64 15.13 16.94 9.95 7.57 16.04 30.64 14.92 11.34 26.33 18.94 15.27 13.58 10.37 10.09 29 I4_SR1 SilentIntronRegion 0 8.77 9.54 28.93 12.80 7.65 7.58 6.39 20.03 15.88 15.36 17.10 10.04 7.68 16.22 31.00 15.14 11.51 26.70 19.09 15.46 13.77 10.49 10.23 30 E5_Aa NovelBoundary 1 3.48 12.63 24.04 14.12 8.66 2.90 9.89 21.73 15.10 15.47 20.32 5.70 0.00 7.30 65.27 12.65 7.57 33.54 45.08 23.07 2.78 2.94 19.21 31 ER5a ExonRegion 0 11.63 29.52 140.99 23.83 17.91 45.33 13.80 63.83 55.81 85.01 30.22 8.71 17.66 57.13 71.34 42.27 33.01 67.78 64.38 37.10 77.23 42.68 38.21 32 E5_Da KnownBoundary 0 17.19 17.17 54.46 18.95 0.00 7.50 4.33 22.96 45.63 25.38 7.53 24.01 14.77 7.18 27.44 23.50 13.46 29.72 22.21 21.28 30.33 39.92 15.19 33 E5a_E5b KnownJunction 0 6.74 23.55 99.67 21.24 31.41 32.42 2.16 55.04 35.53 64.74 16.64 7.65 0.00 24.84 26.82 35.63 9.54 43.82 60.71 17.71 40.03 29.76 43.02 34 ER5b ExonRegion 0 7.02 5.89 35.08 9.29 5.34 9.99 2.69 12.84 24.70 19.19 11.58 2.35 2.40 16.64 29.56 18.84 8.96 17.93 25.88 10.00 17.20 13.02 13.89 35 E5_Ab KnownBoundary 0 14.67 2.89 18.92 10.12 6.45 8.23 0.00 21.65 31.02 11.26 8.00 0.00 0.00 9.54 15.82 11.96 8.32 9.41 0.00 14.19 6.18 11.14 7.43 36 ER5c ExonRegion 0 11.56 16.13 82.03 17.03 19.51 45.60 4.79 42.24 40.02 69.11 18.50 2.97 6.64 31.92 47.69 29.96 29.34 40.30 42.41 26.15 62.64 28.19 22.37 37 E5_Db NovelBoundary 0 14.89 11.77 49.14 1.90 3.65 5.62 12.06 15.32 29.95 21.70 14.37 0.00 0.00 31.14 19.16 11.71 12.81 35.03 47.06 9.40 20.70 5.45 11.69 38 E5b_E6a KnownJunction 0 6.52 15.00 60.58 8.72 18.17 34.18 3.62 45.18 29.25 48.65 4.53 0.00 0.00 28.72 31.28 24.01 26.55 45.27 38.50 9.01 69.81 20.82 18.44 39 I5 Intron 0 2.77 2.66 25.67 6.64 1.73 6.59 3.46 6.74 9.03 13.41 5.06 5.16 5.05 10.71 18.75 7.77 9.71 11.12 14.58 11.13 3.60 7.49 4.80 40 I5_SR1 SilentIntronRegion 0 2.80 2.69 26.00 6.73 1.75 6.68 3.51 6.82 9.13 13.57 5.12 5.23 5.12 10.85 18.99 7.87 9.84 11.27 14.77 11.27 3.65 7.59 4.86 41 E6_Aa NovelBoundary 1 17.48 5.59 34.53 5.43 11.46 10.28 4.46 28.67 41.41 31.62 9.58 6.75 0.00 9.54 61.44 24.10 22.25 27.61 32.57 14.19 13.71 8.14 11.35 42 ER6a ExonRegion 0 14.88 16.68 85.76 31.00 14.38 31.05 9.29 48.97 56.88 77.17 24.56 4.58 5.02 35.63 57.49 39.19 23.47 44.87 38.96 32.81 47.49 29.54 31.07 43 IG35 Intergenic 0 3.50 5.64 13.54 9.52 6.63 2.47 2.59 10.61 9.04 3.70 1.33 2.14 4.22 1.68 10.13 4.58 2.88 9.34 8.31 8.17 1.51 0.48 2.59 44 IG35_AR1 ActiveIntergenicRegion 0 3.69 8.98 13.79 12.27 8.39 7.24 5.23 15.86 9.41 10.13 3.14 4.73 6.31 3.72 14.51 5.18 2.68 19.32 12.95 9.64 2.81 0.97 7.85 45 IG35_SR1 SilentIntergenicRegion 0 0.76 1.72 6.06 3.04 2.54 2.63 7.71 3.32 1.84 3.47 0.84 0.00 0.00 2.50 20.16 7.09 0.00 3.60 3.59 0.49 5.71 0.00 0.08 46 IG35_AR2 ActiveIntergenicRegion 0 7.62 9.46 25.11 14.22 10.78 3.52 5.05 17.86 14.21 5.98 2.33 3.08 8.76 3.72 16.14 4.16 6.37 16.56 12.30 10.79 3.06 0.00 3.16 47 IG35_AR4 ActiveIntergenicRegion 0 2.59 6.29 15.67 11.94 7.54 1.96 1.66 16.48 11.15 3.91 0.95 2.93 2.49 0.66 6.45 4.15 3.34 7.94 9.26 10.90 1.71 0.00 3.95 48 IG35_AR7 ActiveIntergenicRegion 0 3.16 4.99 15.57 11.78 0.57 1.14 1.41 9.54 6.40 3.09 3.34 0.89 5.42 0.36 15.05 4.78 2.79 7.89 7.77 11.46 1.60 0.89 2.75 49 IG35_AR8 ActiveIntergenicRegion 0 2.12 3.39 17.88 5.83 1.34 3.72 0.66 9.54 6.03 2.91 4.66 3.18 2.71 0.37 13.48 2.07 1.59 10.62 8.68 7.95 3.82 0.00 0.83 50 IG35_SR6 SilentIntergenicRegion 0 1.71 1.98 9.16 5.91 3.00 1.19 2.14 5.40 8.33 3.60 0.63 1.15 0.63 1.24 10.44 6.76 2.14 13.23 6.17 11.37 1.43 0.00 1.90