Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF586 Gene 0 91.04 129.94 118.06 70.75 63.64 36.99 26.92 83.15 76.24 48.72 85.94 83.98 67.13 59.78 78.95 66.24 60.35 95.36 46.36 127.91 27.69 20.63 31.98 2 396154 Transcript 0 37.15 38.21 54.95 26.79 27.89 16.77 8.94 35.59 37.75 21.43 54.82 19.18 23.51 35.07 49.16 45.74 35.19 66.86 28.32 75.76 25.71 11.96 19.18 3 396150 Transcript 0 3.48 7.76 4.69 0.00 0.00 4.43 0.00 10.00 7.35 2.16 18.93 0.00 0.00 9.42 2.23 2.18 18.14 9.26 9.22 14.73 5.84 1.38 2.05 4 ER1a ExonRegion 0 84.76 17.31 17.19 4.32 9.14 20.35 8.82 8.39 11.66 2.77 23.71 0.00 5.49 25.19 32.13 33.49 25.60 10.77 20.36 22.11 21.82 9.05 20.77 5 E1_Ab KnownBoundary 0 330.35 55.19 50.47 12.75 45.42 63.60 26.10 24.93 33.45 8.54 75.86 6.60 13.64 71.58 85.54 102.96 73.87 105.13 65.79 59.57 63.82 27.07 57.62 6 ER1b ExonRegion 0 64.02 19.97 45.68 14.91 6.37 18.19 6.88 28.93 41.04 16.86 35.08 4.65 2.73 19.66 43.82 26.77 29.46 22.61 20.21 60.97 25.19 9.73 15.54 7 E1_Da KnownBoundary 0 6.96 3.16 2.81 0.00 4.16 0.00 0.00 6.12 8.22 3.52 6.90 0.00 0.00 4.83 6.06 0.00 4.68 6.80 4.71 17.71 5.31 2.57 4.27 8 E1a_E1c KnownJunction 0 3.41 3.03 1.63 0.00 0.00 0.00 0.00 4.48 8.51 1.26 11.95 0.00 0.00 2.06 0.00 0.00 4.49 4.19 4.52 8.76 11.68 0.00 4.10 9 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 1.37 15.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 2.47 0.00 0.00 10 ER1c ExonRegion 0 3.53 2.03 7.35 0.00 0.00 0.00 0.00 6.91 7.82 6.12 30.28 4.33 0.00 8.66 26.11 8.92 16.50 5.54 6.37 16.31 19.83 2.08 2.94 11 ER1d ExonRegion 1 6.64 4.07 17.29 2.66 4.14 1.42 0.06 22.71 15.38 9.15 59.79 5.71 7.14 19.42 28.49 15.47 34.36 15.33 29.97 44.10 40.27 9.85 6.81 12 E1_Db NovelBoundary 1 3.78 3.22 17.00 3.33 0.00 0.00 2.03 19.47 15.71 4.51 0.00 0.00 0.00 2.41 0.00 57.34 12.90 18.94 21.84 6.39 3.15 11.14 32.69 13 E1b_E2a KnownJunction 1 6.45 0.00 35.24 11.89 11.80 0.00 0.00 40.70 42.94 22.03 80.70 0.00 19.97 40.61 46.60 61.69 51.71 64.38 55.06 90.83 50.23 25.90 15.79 14 E1b_E3a KnownJunction 0 3.56 12.50 7.75 0.00 0.00 8.86 0.00 15.53 6.19 3.06 25.90 0.00 0.00 16.78 4.45 4.36 31.79 14.34 13.93 20.71 0.00 2.76 0.00 15 I1 Intron 0 11.12 8.86 17.46 16.01 12.39 4.64 6.20 12.25 21.09 11.55 2.32 5.00 5.70 2.99 9.04 10.34 7.19 14.78 8.93 14.22 7.28 1.56 9.34 16 I1_SR1 SilentIntronRegion 0 8.69 8.92 15.30 15.25 11.89 4.99 6.76 12.37 18.52 11.32 1.94 4.30 5.35 2.77 8.99 10.65 6.35 13.77 8.70 12.00 7.58 1.32 8.81 17 I1_AR2 ActiveIntronRegion 0 3.47 3.90 5.73 7.09 8.56 2.05 1.22 4.22 16.16 4.59 1.93 5.02 1.88 0.26 1.39 3.33 6.87 1.92 2.04 1.70 0.00 2.50 4.58 18 I1_SR2 SilentIntronRegion 0 22.77 13.67 29.66 26.89 19.38 6.07 7.53 17.85 37.32 17.50 4.60 9.56 9.96 4.11 12.14 13.22 12.98 24.53 13.50 25.09 10.03 2.80 14.29 19 E2_Aa NovelBoundary 1 213.22 135.77 192.51 124.83 144.23 53.04 14.35 107.41 198.35 115.24 19.43 28.81 45.45 17.01 28.80 78.61 33.75 134.10 72.38 146.37 44.97 8.14 26.80 20 ER2a ExonRegion 0 16.00 21.14 72.15 38.54 26.21 14.06 8.91 38.97 55.28 21.90 44.29 17.25 16.69 39.18 57.91 65.93 30.49 139.53 36.64 100.12 25.21 10.76 37.69 21 E2_Da NovelBoundary 0 28.00 24.73 57.51 33.20 32.60 0.00 8.08 44.98 82.67 20.98 0.00 0.00 26.78 9.83 6.18 24.10 4.77 56.17 24.66 42.38 11.55 3.12 38.93 22 E2a_E3a KnownJunction 1 2.82 15.33 51.21 20.58 40.32 25.16 4.02 21.52 22.83 20.79 60.02 0.00 20.45 33.61 38.57 34.78 23.47 81.08 4.80 89.36 11.24 3.00 8.28 23 I2 Intron 0 22.54 22.88 29.99 25.29 21.67 8.46 9.14 27.82 38.93 17.88 4.71 12.18 10.50 5.30 14.80 15.49 9.91 22.88 14.45 25.53 11.65 3.13 17.84 24 I2_SR1 SilentIntronRegion 0 22.23 23.13 31.01 24.45 22.65 7.45 8.47 31.88 46.23 20.14 5.23 14.95 7.98 7.53 15.38 16.27 12.26 31.94 13.25 28.94 15.03 2.89 21.90 25 I2_AR1 ActiveIntronRegion 0 23.49 47.59 51.71 45.79 38.00 15.22 13.24 37.33 54.47 28.67 3.67 12.99 16.88 4.87 15.96 14.86 10.89 22.17 22.30 20.00 16.97 0.00 12.63 26 I2_AR2 ActiveIntronRegion 1 30.29 23.98 38.84 41.65 28.67 12.18 11.79 33.41 45.63 24.62 5.16 11.32 18.03 3.94 21.38 15.32 10.29 17.39 20.60 19.68 8.62 3.96 18.41 27 I2_AR3 ActiveIntronRegion 0 21.75 25.61 28.52 18.55 17.00 8.90 10.25 23.02 29.86 12.06 4.88 11.50 10.82 2.70 10.71 17.88 6.56 15.50 13.34 30.76 9.15 4.15 14.20 28 E3_Aa NovelBoundary 1 32.15 26.38 35.33 32.76 47.96 12.72 7.77 37.71 43.26 21.73 2.05 0.00 33.28 2.41 13.35 8.20 16.64 13.10 8.19 33.81 8.09 5.39 23.73 29 ER3a ExonRegion 0 81.24 102.86 98.46 68.86 58.40 41.43 28.06 85.17 77.23 54.51 104.28 107.69 77.28 71.63 67.30 74.25 71.75 104.93 56.78 146.03 32.02 26.08 42.27 30 E3_Da KnownBoundary 0 153.66 231.74 204.25 177.20 128.27 99.54 88.41 204.67 145.80 100.25 176.47 167.45 103.24 91.29 153.29 173.12 108.09 225.92 139.58 301.88 61.47 50.76 62.91 31 ER3b ExonRegion 0 109.34 173.48 146.53 85.44 79.88 41.03 31.88 97.03 85.95 55.00 89.90 93.50 78.44 63.14 93.63 69.63 63.36 99.83 46.69 135.83 25.93 20.99 29.60 32 IG4 Intergenic 0 27.84 41.51 55.85 41.16 36.57 12.78 13.14 33.25 33.39 21.52 3.31 13.51 19.55 6.33 15.14 7.92 5.81 22.33 19.32 45.31 3.50 5.25 9.69 33 IG4_AR2 ActiveIntergenicRegion 0 19.28 26.44 19.06 12.87 24.97 2.85 14.56 10.18 11.25 5.73 0.00 4.81 8.86 4.69 3.87 3.63 4.77 8.62 28.67 23.17 1.22 2.55 8.48 34 IG4_AR3 ActiveIntergenicRegion 0 46.79 51.46 56.77 32.24 41.36 2.39 18.94 27.32 31.41 14.29 1.01 5.27 17.33 11.86 35.82 5.10 6.75 22.37 27.08 37.65 5.32 1.77 13.34 35 IG4_AR4 ActiveIntergenicRegion 0 67.86 71.68 91.67 64.31 49.50 10.66 17.05 55.96 55.97 32.54 2.42 12.99 22.28 13.70 40.25 12.26 4.33 41.57 31.06 46.54 5.78 0.26 7.16 36 IG4_AR5 ActiveIntergenicRegion 0 45.44 67.41 90.83 65.49 52.74 14.30 16.70 52.42 55.33 37.33 5.96 21.18 32.79 8.01 18.95 9.97 11.21 31.04 30.44 78.24 6.12 7.28 12.42 37 IG4_SR2 SilentIntergenicRegion 0 12.09 35.73 40.79 63.28 23.32 12.05 13.24 60.74 46.41 29.82 2.76 0.00 14.07 9.74 20.72 10.19 3.30 24.02 13.65 57.75 0.00 14.58 6.71 38 IG4_AR6 ActiveIntergenicRegion 0 12.70 38.30 42.07 62.69 24.08 12.84 16.99 64.53 43.43 29.82 3.22 0.00 14.07 10.56 22.73 9.91 3.30 20.94 11.15 62.41 0.00 11.11 5.87 39 IG4_SR3 SilentIntergenicRegion 0 13.92 21.98 30.28 23.35 24.71 12.22 10.23 18.92 17.12 10.13 1.53 8.56 10.13 4.72 11.13 6.47 1.92 15.80 10.75 21.63 1.56 3.88 7.66