Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC008895.2 Gene 0 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.14 0.00 0.00 0.04 0.20 0.17 0.05 0.00 0.00 0.00 0.00 0.12 0.00 1.31 0.04 0.00 2 501576 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.06 0.00 0.00 0.01 0.08 0.07 0.09 0.00 0.00 0.00 0.00 0.05 0.00 0.65 0.02 0.00 3 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 4 E1_Da NovelBoundary 0 22.82 37.69 115.79 71.59 27.59 46.45 30.74 115.79 183.68 216.56 80.39 37.06 20.45 166.11 195.07 125.61 148.39 312.85 140.62 154.36 177.80 59.95 125.83 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix_AR7 ActiveIntronRegion 0 25.64 18.38 7.31 9.28 13.38 5.50 27.70 19.94 6.32 11.78 1.93 29.81 20.38 4.19 13.28 21.72 16.50 24.02 9.56 41.41 8.90 0.40 13.10 7 Ix_AR5 ActiveIntronRegion 0 12.55 10.06 7.58 11.64 9.52 1.81 9.69 6.62 7.64 6.42 0.76 4.53 8.73 1.78 3.98 5.88 10.44 12.17 6.30 18.09 3.48 0.41 11.61 8 Ix_AR4 ActiveIntronRegion 0 11.35 10.36 5.61 12.44 6.80 4.39 13.45 12.93 12.07 11.23 1.75 6.70 6.37 3.19 9.57 18.26 11.82 36.50 8.22 25.20 10.91 2.57 16.74 9 Ix_SR4 SilentIntronRegion 0 10.97 9.76 6.07 8.30 8.90 1.48 14.32 7.96 8.88 5.36 1.70 7.08 7.40 1.26 5.96 8.19 7.14 15.94 10.22 17.55 4.82 1.53 12.56 10 Ix_SR3 SilentIntronRegion 0 12.19 14.11 7.79 12.03 8.50 3.02 12.91 9.67 7.70 7.46 0.87 4.27 9.59 1.17 7.59 9.08 8.18 15.90 6.75 15.53 4.88 1.55 10.05 11 Ix_AR2 ActiveIntronRegion 0 15.35 18.27 7.29 12.64 13.57 2.77 21.01 14.12 13.03 13.72 1.12 11.63 15.95 1.40 8.90 10.49 10.57 7.58 12.82 24.02 3.57 3.03 12.68 12 Ix_SR2 SilentIntronRegion 0 10.69 12.06 6.73 12.25 9.49 3.01 19.17 10.92 14.64 12.71 2.39 6.05 8.73 2.02 7.23 14.27 13.36 23.63 10.33 24.89 7.23 2.87 14.86 13 Ix Intron 0 20.17 17.00 17.11 21.74 17.23 4.68 18.34 20.81 21.73 18.43 3.52 5.50 9.67 3.25 12.32 18.76 15.15 29.23 16.06 22.37 7.28 2.78 14.99 14 Ix_SR4 SilentIntronRegion 0 14.76 14.50 14.46 18.45 14.24 5.93 16.88 19.63 22.11 21.01 3.80 6.29 10.44 3.59 9.17 22.09 15.88 31.21 18.56 25.80 10.34 2.42 18.20 15 Ix_AR9 ActiveIntronRegion 0 16.06 19.56 29.51 28.70 16.02 7.66 19.74 17.73 24.69 24.46 5.59 5.00 10.38 2.18 17.02 28.65 19.40 38.49 11.77 24.40 6.32 3.39 20.34 16 Ix_SR3 SilentIntronRegion 0 25.11 19.43 22.51 30.54 21.18 3.33 22.10 21.49 19.15 16.61 2.85 4.02 8.74 2.14 14.13 15.12 12.20 35.53 15.79 23.51 5.58 2.34 10.98 17 Ix_AR7 ActiveIntronRegion 0 75.40 33.62 29.14 43.48 41.28 7.02 26.85 52.02 33.36 35.21 1.33 11.03 18.33 3.56 17.74 24.58 22.24 24.35 23.13 22.82 4.35 6.82 16.45 18 Ix_SR2 SilentIntronRegion 0 32.05 20.96 16.98 14.65 19.08 3.38 20.25 20.75 19.76 12.87 4.46 4.46 7.29 3.77 15.42 19.62 13.22 20.08 19.47 17.49 6.71 3.93 13.76 19 Ix_AR5 ActiveIntronRegion 0 21.17 25.69 18.64 27.33 10.42 0.00 18.81 14.28 18.92 15.88 8.55 2.05 0.00 1.97 15.12 17.05 23.28 49.50 17.77 33.93 2.20 0.00 21.79 20 Ix_AR4 ActiveIntronRegion 0 16.93 21.47 20.83 29.98 21.41 0.41 19.42 15.94 22.64 20.52 8.81 0.00 0.00 4.87 17.73 18.82 27.51 50.71 17.34 36.17 3.43 0.00 25.12 21 Ix_AR3 ActiveIntronRegion 0 0.00 6.35 22.06 32.20 16.05 1.83 14.40 17.28 25.32 20.50 7.01 0.00 3.52 5.48 14.14 5.94 27.23 48.73 5.97 32.18 2.20 0.00 20.56 22 Ix_AR2 ActiveIntronRegion 0 1.27 6.91 23.28 36.93 19.27 3.67 12.58 15.38 24.95 19.50 5.03 0.00 10.32 8.12 21.76 5.94 25.09 47.30 10.83 31.91 4.41 2.08 18.21 23 Ix_SR1 SilentIntronRegion 0 2.12 10.66 16.67 27.68 10.64 2.69 11.74 18.32 18.61 12.64 4.38 1.25 11.57 8.95 22.69 13.47 30.74 23.40 12.10 26.15 10.43 3.43 17.03 24 Ix_AR1 ActiveIntronRegion 0 2.62 10.01 16.00 21.81 13.30 3.97 12.12 14.07 21.30 10.64 3.12 2.97 11.40 4.12 9.58 14.23 19.61 30.61 13.05 24.33 5.42 0.23 20.41 25 E2_Aa NovelBoundary 0 86.39 293.70 50.86 77.08 100.08 170.24 167.24 192.68 288.60 298.76 182.20 168.50 236.67 329.45 152.79 197.64 247.22 449.73 263.73 458.80 264.16 193.50 251.82 26 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.18 0.00 0.00 0.04 0.25 0.21 0.00 0.00 0.00 0.00 0.00 0.15 0.00 1.51 0.05 0.00 27 IG15_AR11 ActiveIntergenicRegion 0 4.56 19.34 13.38 13.28 8.03 21.85 15.47 37.80 88.06 85.57 80.96 44.66 41.91 105.56 46.73 72.70 105.86 251.02 127.52 207.86 108.97 54.43 89.54 28 IG15_SR7 SilentIntergenicRegion 0 8.30 11.81 2.59 10.21 19.24 3.91 11.25 10.23 9.19 7.17 1.55 7.07 8.99 0.63 9.19 8.90 9.55 10.59 5.09 15.50 2.64 1.74 8.93 29 IG15_AR9 ActiveIntergenicRegion 0 23.61 20.43 5.04 13.57 52.93 11.59 20.62 21.18 9.63 8.08 0.33 11.07 8.82 1.98 14.41 22.14 12.90 13.62 14.47 14.70 2.46 1.65 14.70 30 IG15_SR6 SilentIntergenicRegion 0 10.86 13.65 8.01 10.37 13.86 5.43 14.65 11.16 10.30 8.90 4.56 8.86 13.50 2.83 9.33 12.63 11.85 9.71 7.56 17.93 2.48 1.06 7.72 31 IG15_AR8 ActiveIntergenicRegion 0 11.96 9.87 11.17 11.15 14.02 4.66 18.95 16.58 13.15 19.08 13.32 35.88 33.02 4.22 10.44 28.89 21.23 20.02 13.72 35.82 3.00 3.70 13.06 32 IG15_AR7 ActiveIntergenicRegion 0 18.90 3.23 10.31 7.05 16.70 3.60 24.70 8.34 11.50 19.26 7.80 13.29 32.67 8.23 9.40 12.09 13.55 9.88 6.70 25.97 2.20 4.10 7.70 33 IG15_AR6 ActiveIntergenicRegion 0 12.30 5.91 14.06 11.81 27.52 0.35 15.45 8.48 12.47 16.22 11.23 30.72 25.24 7.50 15.20 13.02 24.21 9.06 5.46 25.94 1.78 3.67 10.63 34 IG15_SR5 SilentIntergenicRegion 0 5.79 9.33 9.72 9.47 11.80 4.08 18.53 11.56 10.49 11.10 10.18 12.91 12.29 6.18 8.79 16.01 17.27 10.44 10.24 23.67 4.28 1.49 7.55 35 IG15_AR5 ActiveIntergenicRegion 0 10.66 8.07 9.61 8.40 8.38 3.82 11.60 18.53 7.43 13.95 14.43 14.49 13.03 10.37 14.80 23.24 20.07 27.95 22.56 35.18 8.36 1.01 13.28 36 IG15_SR4 SilentIntergenicRegion 0 16.87 11.63 12.79 12.57 11.87 5.57 18.17 21.81 18.75 16.44 18.58 19.61 60.33 9.03 26.88 30.57 35.26 24.91 22.60 37.32 8.52 1.74 19.52 37 IG15_AR4 ActiveIntergenicRegion 0 14.10 6.73 13.05 8.29 5.63 3.71 13.99 21.00 18.35 17.58 18.52 9.97 21.83 9.89 28.51 27.13 28.48 45.31 21.38 44.88 9.89 2.00 17.46 38 IG15_SR3 SilentIntergenicRegion 0 5.66 5.44 5.10 2.94 1.60 4.51 4.37 9.01 9.70 9.30 8.54 4.36 5.98 7.89 11.43 11.32 17.32 16.13 14.95 28.74 10.26 3.80 6.60 39 IG15_SR2 SilentIntergenicRegion 0 0.00 0.31 5.62 1.57 0.00 2.86 1.33 2.22 2.20 0.98 5.33 0.00 0.23 4.57 4.20 8.60 2.33 17.40 7.92 6.54 5.95 0.86 5.80