Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC011460.2 Gene 0 5.53 31.73 28.53 6.94 13.75 22.94 9.19 16.77 3.15 2.19 1.28 2.35 2.28 2.54 1.45 3.25 3.45 24.51 14.98 22.84 3.56 1.49 2.65 2 500242 Transcript 0 2.01 15.81 16.82 3.78 10.88 21.38 8.58 15.00 2.35 1.37 0.51 1.32 1.19 1.38 0.86 1.38 1.61 10.92 9.73 9.17 2.08 0.84 1.43 3 499495 Transcript 0 5.62 19.71 21.01 6.51 9.19 8.35 5.54 8.18 2.59 2.24 0.46 0.99 0.62 0.24 0.16 1.23 2.28 31.20 14.08 25.39 1.20 0.33 0.26 4 IG10_AR2 ActiveIntergenicRegion 0 4.07 2.40 14.61 5.37 0.28 0.27 1.99 9.54 4.45 4.09 0.57 5.08 2.03 4.34 4.34 5.36 3.11 9.45 3.11 9.54 1.30 0.61 2.29 5 ER1a ExonRegion 0 0.19 1.66 0.78 0.12 4.38 12.00 4.21 4.56 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.29 4.64 0.00 0.00 0.00 6 ER1b ExonRegion 0 8.30 36.99 5.91 2.21 27.90 61.53 13.87 12.73 0.00 0.53 0.00 2.61 0.00 0.93 0.00 0.00 0.00 2.14 13.55 29.08 1.78 0.00 0.00 7 E1a_E2a KnownJunction 0 6.00 13.02 4.85 1.33 12.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 3.07 0.00 0.00 0.00 8 E1a_E5a KnownJunction 0 0.00 9.14 5.80 3.46 3.23 36.63 3.58 14.13 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 7.15 0.00 0.00 0.00 0.00 9 I1 Intron 0 5.18 21.40 14.69 7.91 12.48 9.21 9.99 10.12 4.00 3.68 1.14 3.39 2.52 1.87 2.04 2.03 2.01 12.91 12.97 25.16 1.36 1.87 2.69 10 I1_AR1 ActiveIntronRegion 0 2.75 11.70 6.74 3.39 3.88 3.83 5.80 5.85 4.32 5.47 1.28 1.78 1.16 3.80 0.41 3.14 0.99 20.18 12.02 24.25 1.82 0.42 1.40 11 I1_SR2 SilentIntronRegion 0 3.02 16.31 11.06 4.91 3.19 3.18 7.37 7.36 2.47 3.91 1.10 0.62 0.47 1.28 1.17 0.65 0.00 5.80 10.83 16.96 0.00 0.00 0.10 12 I1_SR3 SilentIntronRegion 0 3.30 24.84 13.03 5.72 9.55 5.37 8.68 7.11 2.10 3.57 0.70 3.39 1.70 0.84 1.42 0.75 1.75 8.26 10.13 23.20 0.68 0.29 0.98 13 I1_AR4 ActiveIntronRegion 0 6.44 16.06 16.50 12.17 26.57 16.50 12.22 12.44 9.24 2.73 2.00 4.35 6.17 1.33 4.44 1.15 1.28 11.13 6.48 23.20 0.57 5.25 3.04 14 I1_SR5 SilentIntronRegion 0 11.45 31.52 18.90 13.35 20.71 13.81 12.13 11.70 7.57 5.47 1.92 2.87 2.13 1.49 4.98 4.27 3.64 12.10 12.66 20.49 4.62 5.29 7.78 15 I1_AR5 ActiveIntronRegion 0 9.40 26.32 32.66 17.01 17.31 16.52 13.44 14.06 4.20 3.69 0.74 3.26 1.58 3.15 4.09 3.77 4.19 40.79 18.99 34.55 3.63 2.64 8.94 16 I1_SR6 SilentIntronRegion 0 5.84 20.63 17.39 8.93 11.01 13.22 11.33 15.38 4.98 2.40 0.98 5.28 3.66 2.39 1.66 2.68 2.42 14.04 18.67 33.09 0.99 3.28 3.14 17 I1_AR6 ActiveIntronRegion 0 7.48 28.41 20.90 11.28 18.45 15.75 18.50 16.91 6.20 5.47 3.58 7.46 7.80 3.24 2.41 3.00 4.44 10.83 21.98 42.24 2.23 2.81 3.46 18 Ix Intron 0 8.90 23.77 26.06 11.05 17.67 9.97 10.19 10.64 5.46 4.71 0.68 2.64 3.56 1.10 1.60 1.47 3.38 11.46 11.93 26.75 1.16 1.84 1.76 19 Ix_AR1 ActiveIntronRegion 0 5.41 11.84 18.74 8.07 21.24 4.83 8.44 4.87 4.48 2.65 0.66 0.00 1.91 1.73 1.83 0.86 1.92 4.53 11.21 21.46 0.32 0.03 1.28 20 Ix_SR2 SilentIntronRegion 0 10.68 29.06 32.26 13.60 18.90 12.98 11.83 13.96 6.32 5.80 0.70 3.67 4.51 1.05 1.48 1.78 4.49 14.96 13.62 31.60 1.55 2.60 2.24 21 Ix_AR2 ActiveIntronRegion 0 9.55 28.93 8.35 3.85 3.63 5.50 6.82 5.89 4.00 4.42 1.01 3.71 2.44 0.00 2.87 1.55 0.00 9.62 5.36 15.11 1.15 2.17 0.00 22 Ix Intron 0 10.11 28.51 22.79 10.33 16.90 7.91 10.81 15.88 8.22 4.74 3.57 3.30 6.67 0.71 1.76 6.41 7.12 23.51 14.72 31.80 2.72 1.28 3.17 23 Ix_SR1 SilentIntronRegion 0 10.17 28.67 22.93 10.39 17.00 7.96 10.88 15.98 8.27 4.77 3.60 3.32 6.71 0.71 1.77 6.45 7.16 23.65 14.81 31.99 2.73 1.29 3.19 24 E2_Aa NovelBoundary 0 6.74 35.91 42.28 5.43 12.05 17.15 4.50 12.57 1.16 1.13 0.00 0.00 8.28 0.00 0.00 8.37 9.54 19.03 15.62 40.91 0.00 3.12 0.00 25 ER2a ExonRegion 0 1.73 7.76 5.73 2.63 5.58 2.63 1.88 3.46 0.00 0.00 1.39 2.56 2.77 0.82 0.00 2.13 2.37 3.02 0.13 17.86 0.00 1.50 0.00 26 E2_Da NovelBoundary 0 17.41 31.64 33.09 14.42 17.06 2.90 11.61 25.38 12.73 6.98 4.84 0.00 6.33 0.00 0.00 0.00 8.32 29.97 16.38 30.23 2.59 2.27 4.10 27 E2a_E3a KnownJunction 0 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 Ix Intron 0 4.39 21.34 13.21 4.77 9.19 9.29 5.15 9.08 2.00 2.16 2.80 4.19 1.12 2.44 0.93 3.23 3.28 10.39 7.19 17.12 1.59 0.75 1.59 29 Ix_SR1 SilentIntronRegion 0 2.35 20.35 9.57 5.16 8.50 9.91 4.84 9.41 2.34 2.99 3.99 3.40 0.75 3.05 0.98 2.83 3.15 8.17 6.07 18.25 1.05 0.33 0.93 30 Ix_AR1 ActiveIntronRegion 0 7.15 22.83 18.16 4.30 10.19 8.54 5.60 8.71 1.56 1.09 1.23 5.28 1.63 1.66 0.87 3.77 3.49 13.42 8.74 15.74 2.31 1.32 2.49 31 Ix Intron 0 5.00 52.54 12.96 4.46 9.49 17.34 10.06 9.13 3.42 1.44 0.65 1.81 0.65 0.47 2.02 1.51 1.11 14.44 9.14 18.32 0.00 1.06 1.98 32 Ix_SR1 SilentIntronRegion 0 7.57 68.20 12.25 3.63 10.77 18.87 15.40 14.98 2.47 2.29 0.00 1.60 1.73 0.73 1.30 0.00 0.00 30.03 12.83 30.46 0.00 0.00 2.63 33 Ix_SR2 SilentIntronRegion 0 3.48 43.49 13.53 5.01 8.80 16.59 6.90 5.65 4.04 0.94 1.06 1.96 0.00 0.31 2.48 2.44 1.81 5.04 6.99 11.08 0.00 1.71 1.61 34 E3_Aa NovelBoundary 0 16.82 46.50 102.78 76.21 41.00 49.01 14.31 100.38 72.97 33.95 7.42 7.65 0.00 0.00 0.00 28.11 4.21 114.74 25.60 82.64 16.62 8.14 11.87 35 ER3a ExonRegion 0 0.79 18.37 18.87 8.49 4.26 8.46 4.01 7.13 3.74 1.59 0.00 0.00 0.00 0.00 0.00 3.13 0.00 36.34 16.99 24.20 0.21 0.00 1.56 36 E3_Da NovelBoundary 0 13.11 36.18 36.52 6.66 12.05 23.85 16.91 16.51 4.31 7.15 2.05 0.00 0.00 0.00 0.00 0.00 4.77 57.33 16.94 36.24 2.97 0.00 4.01 37 E3a_E4a KnownJunction 0 20.52 57.36 73.45 19.78 27.42 25.78 23.14 27.64 9.55 7.28 0.00 0.00 0.00 0.00 0.00 0.00 8.98 116.73 50.07 81.69 2.90 0.00 0.00 38 E4_Aa NovelBoundary 0 3.26 8.81 14.10 4.06 0.00 4.32 0.00 14.05 3.24 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.58 15.81 18.86 2.53 0.00 0.00 39 ER4a ExonRegion 0 4.67 21.75 20.93 6.81 5.74 13.25 4.18 10.83 2.24 4.56 1.38 3.40 0.92 0.64 0.98 2.14 2.36 29.56 17.30 25.52 4.10 0.50 0.00 40 E4_Da NovelBoundary 0 10.22 12.83 6.74 3.70 3.74 15.10 6.23 11.83 1.48 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.28 9.22 35.67 2.41 0.00 0.00 41 E5_Aa NovelBoundary 0 0.00 15.85 7.27 5.43 3.31 2.90 11.92 15.12 4.14 3.87 2.63 0.00 0.00 0.00 4.70 0.00 0.00 27.40 8.85 27.04 2.90 0.00 3.59 42 ER5a ExonRegion 0 0.27 19.62 15.70 4.04 7.57 10.88 5.30 18.27 2.17 2.63 0.54 2.96 2.15 2.08 2.05 1.66 1.84 22.14 16.00 17.24 6.76 1.74 1.64 43 E5_Da NovelBoundary 0 3.78 66.83 16.11 25.04 18.25 29.64 13.91 33.89 28.04 30.73 9.63 0.00 6.98 0.00 0.00 18.37 13.09 65.12 19.77 86.80 35.09 10.90 18.61 44 E5a_E6a KnownJunction 0 0.00 0.00 14.25 1.83 17.32 13.40 14.75 13.76 4.63 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 9.22 0.00 0.00 0.00 0.00 45 E6_Aa NovelBoundary 0 45.93 129.06 78.12 44.08 31.83 41.06 31.31 74.22 21.90 17.11 4.47 0.00 0.00 2.65 0.00 15.89 9.54 12.39 12.24 24.67 8.71 8.45 0.00 46 ER6a ExonRegion 0 9.59 48.62 47.56 9.46 21.92 34.00 15.08 24.27 4.93 1.63 2.04 2.05 3.81 4.80 2.25 5.23 6.21 27.79 15.98 23.95 3.62 2.45 5.52