Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AKT1S1 Gene 0 15.95 13.04 29.52 9.80 12.43 15.50 9.34 23.72 28.74 47.75 33.33 13.07 10.38 39.53 50.72 25.81 27.99 39.36 52.01 27.54 94.14 45.99 39.87 2 391830 Transcript 0 6.41 1.00 1.31 0.79 0.17 0.86 0.34 3.57 2.69 2.74 0.00 0.87 4.11 0.05 3.94 1.46 0.81 0.00 0.20 0.58 3.60 6.60 7.75 3 482622 Transcript 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 2.18 4.37 3.92 0.00 0.00 0.00 4.94 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 4 391835 Transcript 0 8.47 1.94 3.76 2.31 9.08 6.33 4.28 4.71 6.42 9.27 13.56 2.19 1.23 22.15 19.57 9.42 22.02 10.94 16.42 3.96 11.74 11.17 15.28 5 344175 Transcript 0 0.00 0.00 1.48 0.00 0.00 5.39 0.00 0.00 8.07 7.47 0.00 0.00 0.00 2.35 0.00 8.03 4.77 6.26 0.00 3.26 6.30 3.12 0.00 6 391834 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 391832 Transcript 0 0.00 3.35 12.45 0.00 8.66 2.50 5.79 7.23 13.95 22.30 5.16 0.00 0.00 4.36 23.36 0.00 0.00 13.80 4.52 0.00 14.09 11.70 4.18 8 391831 Transcript 0 2.87 2.76 5.45 2.47 2.18 2.36 3.05 6.22 5.61 6.15 6.94 2.48 0.79 8.76 8.11 5.03 2.91 9.53 9.94 5.48 14.94 11.45 9.56 9 391833 Transcript 0 5.88 4.37 8.08 2.52 5.15 3.50 3.35 6.44 6.79 9.00 9.69 4.56 2.70 10.51 12.87 8.08 7.37 10.86 11.69 8.15 15.25 11.42 11.74 10 ER1a ExonRegion 0 6.00 1.99 0.90 1.59 0.33 1.71 0.69 3.24 0.00 0.86 0.00 1.75 1.89 0.11 3.43 2.91 1.62 0.00 0.40 1.17 4.30 4.21 7.57 11 E1_Ab KnownBoundary 0 6.82 0.00 0.00 2.06 3.06 5.62 0.00 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 6.52 0.00 6.25 15.54 12 ER1b ExonRegion 1 14.54 0.56 4.26 2.47 4.22 2.01 4.36 11.73 5.72 9.47 2.61 3.91 4.64 24.33 20.89 4.11 22.34 0.78 1.52 2.85 3.45 12.15 14.75 13 E1_Da NovelBoundary 1 174.33 123.53 151.65 155.26 53.40 134.92 40.45 169.92 293.89 142.88 240.01 25.06 73.70 157.57 215.59 427.84 251.89 233.59 917.30 60.27 328.47 323.01 815.30 14 E1a_E2e KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 2.18 4.37 3.92 0.00 0.00 0.00 4.94 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E4b KnownJunction 0 6.82 0.00 1.71 0.00 0.00 0.00 0.00 3.90 5.38 4.62 0.00 0.00 6.33 0.00 4.45 0.00 0.00 0.00 0.00 0.00 2.90 9.00 7.94 16 ER2a ExonRegion 0 8.47 1.94 3.76 2.31 9.08 6.33 4.28 4.71 6.42 9.27 13.56 2.19 1.23 22.15 19.57 9.42 22.02 10.94 16.42 3.96 11.74 11.17 15.28 17 E2_Ab KnownBoundary 0 7.11 12.56 7.33 3.76 30.48 30.95 34.62 4.76 9.66 12.52 10.48 6.30 0.00 33.26 41.29 18.97 22.35 21.14 46.50 15.28 39.17 23.33 29.36 18 E2_Ac KnownBoundary 0 53.42 66.76 17.71 7.23 61.80 74.11 51.85 17.42 14.50 24.87 49.17 0.00 0.00 59.51 110.02 44.18 63.86 28.40 223.25 72.80 103.66 103.61 177.56 19 ER2b ExonRegion 0 25.62 45.17 31.86 11.41 50.70 59.45 47.11 21.29 20.35 44.49 38.56 4.33 0.00 55.82 83.68 40.36 52.64 60.49 171.17 52.52 88.61 76.76 127.51 20 ER2c ExonRegion 1 70.20 78.68 46.51 18.85 64.98 88.15 60.87 33.54 48.90 71.35 77.04 0.72 0.00 53.52 87.80 67.23 74.43 109.90 337.72 95.64 134.01 113.11 163.33 21 E2_Ad KnownBoundary 1 94.83 80.91 47.54 19.05 58.83 81.49 71.15 30.64 67.13 70.83 66.07 0.00 0.00 47.74 52.66 65.71 57.88 122.99 320.39 91.02 121.82 86.22 91.68 22 ER2d ExonRegion 1 33.16 34.76 40.52 19.40 38.61 53.79 26.20 31.81 59.49 74.93 33.55 2.16 0.00 30.78 55.26 40.62 35.45 84.60 114.82 53.80 72.46 50.80 64.26 23 E2_Da KnownBoundary 0 32.52 19.27 25.49 21.68 43.46 44.92 20.54 29.45 31.80 61.49 26.69 12.15 0.00 24.02 74.91 34.61 31.88 47.26 44.61 44.93 45.16 40.41 81.61 24 E2a_E4b KnownJunction 0 0.00 0.00 1.48 0.00 0.00 5.39 0.00 0.00 8.07 7.47 0.00 0.00 0.00 2.35 0.00 8.03 4.77 6.26 0.00 3.26 6.30 3.12 0.00 25 ER2e ExonRegion 0 11.94 22.34 40.43 15.93 20.45 40.55 17.28 31.04 51.04 82.04 46.39 13.52 4.98 50.95 78.11 35.60 48.30 63.14 135.11 62.28 92.63 77.65 67.38 26 E2_Db KnownBoundary 0 6.45 23.94 46.98 13.42 30.81 55.14 35.86 41.28 52.29 68.90 20.90 0.00 0.00 29.14 87.77 12.30 26.65 80.79 72.47 69.93 52.94 43.97 30.22 27 E2b_E4b KnownJunction 0 0.00 3.35 12.45 0.00 8.66 2.50 5.79 7.23 13.95 22.30 5.16 0.00 0.00 4.36 23.36 0.00 0.00 13.80 4.52 0.00 14.09 11.70 4.18 28 ER2f ExonRegion 0 19.88 37.56 45.00 22.30 23.36 50.39 18.34 48.26 71.26 95.31 36.60 14.99 13.78 47.22 52.53 27.44 38.62 65.53 93.82 73.89 91.03 83.68 43.77 29 E2_Ae KnownBoundary 0 27.19 32.17 41.48 35.86 26.91 21.75 11.08 61.45 85.79 109.06 35.75 7.20 6.82 43.26 30.16 35.72 29.36 82.33 88.28 74.78 103.72 88.60 49.43 30 ER2g ExonRegion 0 14.54 21.57 24.51 16.27 17.97 26.96 11.57 28.69 42.40 64.07 24.88 11.38 11.42 35.49 30.05 18.26 20.87 44.32 66.46 50.81 71.21 52.95 34.51 31 E2_Dc KnownBoundary 0 6.15 36.70 21.82 11.19 16.30 7.38 11.17 30.35 38.08 62.27 9.69 6.15 5.68 37.73 23.86 18.54 20.66 58.24 44.90 44.61 59.49 45.62 39.44 32 ER2h ExonRegion 0 8.43 17.71 11.52 7.68 11.87 15.10 6.50 16.25 24.05 51.24 25.65 7.01 1.28 21.26 42.57 30.64 17.04 38.87 33.76 40.15 78.01 42.24 36.73 33 E2_Dd NovelBoundary 0 10.52 2.89 7.07 1.50 0.00 8.12 2.21 0.00 1.74 2.39 9.69 0.00 0.00 10.01 4.45 7.43 11.78 7.71 7.62 8.88 3.15 4.96 6.49 34 E2d_E4b KnownJunction 1 21.34 11.84 22.12 11.42 24.11 25.55 13.34 26.49 33.45 70.32 38.11 6.75 0.00 14.07 94.07 59.30 29.36 101.19 55.72 33.30 142.52 64.66 62.74 35 I2 Intron 0 0.92 1.47 9.50 1.76 3.09 2.65 2.68 2.23 4.25 4.94 8.94 2.06 1.79 11.09 10.87 4.72 9.06 8.49 9.66 8.91 19.42 6.92 7.64 36 I2_AR1 ActiveIntronRegion 0 1.13 1.28 10.07 2.04 3.80 2.82 2.73 2.38 4.89 5.08 9.70 1.98 2.21 11.66 12.51 5.81 9.73 9.46 9.78 9.74 20.03 6.50 8.21 37 E3_Aa NovelBoundary 0 0.00 9.60 15.61 3.40 7.81 2.21 10.16 20.21 7.38 5.16 17.06 0.00 0.00 16.78 15.58 10.85 17.86 17.04 22.40 20.33 31.38 35.70 36.54 38 ER3a ExonRegion 0 5.74 5.52 10.90 4.95 4.36 4.73 6.11 10.22 11.21 12.30 13.88 4.95 1.57 17.52 16.22 10.06 5.82 19.06 19.87 10.96 26.72 22.89 19.12 39 E3_Da NovelBoundary 0 3.11 0.00 33.44 5.36 3.90 5.00 8.04 15.85 14.70 19.64 29.27 6.30 0.00 40.85 31.40 16.32 13.56 31.09 46.21 27.23 25.70 25.41 48.23 40 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 41 I3 Intron 1 6.54 4.54 10.98 5.93 5.97 7.24 6.37 4.87 8.22 13.21 23.57 6.12 3.98 21.87 15.15 12.76 11.34 19.25 20.79 10.60 26.11 20.75 18.15 42 I3_SR1 SilentIntronRegion 1 6.56 4.55 11.02 5.95 5.99 7.27 6.39 4.88 8.25 13.26 23.65 6.14 3.99 21.93 15.20 12.80 11.37 19.31 20.86 10.63 26.20 20.81 18.22 43 E4_Aa NovelBoundary 0 30.60 12.76 13.28 3.50 0.00 24.76 17.97 15.12 14.55 28.02 28.64 23.41 0.00 30.14 23.98 28.97 13.28 13.22 21.65 14.64 54.24 28.47 31.07 44 ER4a ExonRegion 0 11.75 8.74 16.16 5.05 10.31 7.01 6.71 12.87 13.58 18.00 19.38 9.12 5.40 21.02 25.75 16.16 14.75 21.72 23.38 16.31 30.51 22.85 23.47 45 E4_Ab KnownBoundary 0 20.60 0.00 20.34 2.06 7.81 10.68 6.09 5.67 11.49 16.01 14.79 5.55 0.00 39.08 46.48 23.84 4.68 21.31 11.67 8.69 8.53 11.39 20.49 46 ER4b ExonRegion 0 15.95 14.99 89.92 20.04 15.77 26.23 13.94 62.51 73.31 136.78 92.78 25.18 25.70 94.55 150.66 66.16 71.29 123.24 119.74 71.67 316.74 119.93 111.02 47 E4_Da KnownBoundary 1 34.23 33.68 161.26 25.64 36.08 69.96 36.74 92.99 130.24 288.12 213.16 30.31 14.61 134.44 164.41 94.42 187.66 173.32 239.25 124.64 640.08 207.09 135.30 48 ER4c ExonRegion 0 32.15 20.91 138.17 26.02 17.47 57.71 24.01 94.22 119.34 261.49 164.55 55.87 34.95 143.54 142.22 66.68 130.48 169.33 179.46 65.72 534.09 177.77 99.35 49 E4b_E5a KnownJunction 0 56.08 18.29 178.56 33.66 22.67 60.08 20.93 125.60 138.11 284.49 147.93 61.82 50.97 197.48 168.24 73.57 93.50 214.73 229.37 60.47 535.67 179.97 126.08 50 I4_SR1 SilentIntronRegion 0 2.65 2.05 6.24 1.35 1.12 1.96 1.22 2.95 3.18 3.87 5.39 1.17 1.29 2.60 6.65 3.82 6.54 4.49 4.51 0.60 8.41 6.64 11.34 51 E5_Aa NovelBoundary 0 3.26 0.00 13.25 2.03 0.00 0.00 5.43 9.57 10.07 7.76 4.79 0.00 6.17 2.24 8.90 0.00 0.00 14.34 12.99 2.36 14.09 11.39 10.67 52 ER5a ExonRegion 0 51.47 25.76 155.20 37.55 27.07 36.44 16.89 110.47 126.54 247.48 159.14 94.69 63.44 184.77 192.00 104.98 108.13 202.92 200.92 86.77 541.29 173.95 174.77 53 E5a_E6a KnownJunction 0 110.02 40.12 173.68 41.05 46.69 33.50 22.74 116.08 147.86 306.41 180.20 80.43 53.24 195.95 165.15 176.53 144.46 254.28 241.80 103.74 627.35 190.44 267.27 54 ER6a ExonRegion 0 38.47 27.17 125.00 43.26 27.31 44.25 21.93 87.34 103.01 207.98 123.13 51.95 39.81 162.49 184.52 98.19 78.00 122.29 189.98 76.46 455.13 168.85 131.82 55 E6_Da NovelBoundary 0 0.00 6.71 1.83 3.50 8.66 2.33 6.18 7.97 1.71 3.95 10.32 6.30 0.00 9.89 0.00 4.36 0.00 10.86 0.00 11.82 11.68 16.90 3.93 56 E6a_E7a KnownJunction 0 68.31 39.80 156.80 67.86 55.94 24.25 10.02 138.83 141.49 239.66 102.82 48.32 47.40 211.43 220.66 111.94 80.41 177.13 279.26 94.85 404.33 185.11 141.96 57 I6 Intron 0 5.82 3.58 6.50 2.01 4.95 4.96 3.40 5.81 5.06 4.78 10.81 4.15 2.44 8.68 12.88 9.24 10.27 10.73 9.20 5.95 12.02 10.90 14.70 58 I6_AR1 ActiveIntronRegion 0 1.81 0.00 0.21 0.00 5.05 3.20 1.70 1.73 1.24 0.29 8.17 0.00 2.68 9.79 6.05 9.00 5.75 10.45 13.29 0.00 3.46 5.12 3.61 59 I6_SR1 SilentIntronRegion 1 6.45 8.36 8.20 2.51 5.18 7.39 4.96 5.88 5.71 4.84 20.73 1.47 2.42 20.72 11.07 14.57 10.59 21.23 19.83 6.13 12.60 14.84 18.31 60 I6_AR2 ActiveIntronRegion 0 7.56 4.84 5.08 2.13 4.96 6.78 2.74 6.34 3.92 4.58 10.34 5.98 3.62 8.36 15.18 9.30 11.89 11.89 9.45 5.46 14.30 9.09 15.75 61 I6_SR2 SilentIntronRegion 0 4.80 1.95 7.48 1.96 4.90 3.36 3.62 5.71 5.93 5.18 9.20 3.77 1.65 6.29 12.21 8.12 9.44 7.78 6.56 6.61 10.94 11.64 13.95 62 E7_Aa NovelBoundary 0 13.93 0.00 7.33 0.00 3.65 5.00 4.28 8.91 1.79 2.85 0.00 6.30 0.00 4.94 19.28 4.02 9.44 19.69 12.33 5.75 5.75 8.45 0.00 63 ER7a ExonRegion 0 24.49 17.85 31.48 10.62 10.88 14.18 8.68 25.63 30.42 52.59 35.73 16.34 18.06 44.56 68.25 30.40 28.31 34.72 51.26 24.06 139.78 53.45 38.93 64 ER7b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER7c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER7d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 IG31_AR2 ActiveIntergenicRegion 0 1.76 0.55 2.49 1.91 0.74 0.00 0.63 4.09 3.00 0.46 12.85 0.00 2.02 3.19 7.31 11.13 4.51 1.62 5.07 2.13 8.50 4.39 6.92