Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF525 Gene 0 21.62 24.05 16.35 14.26 17.11 12.28 13.08 8.14 9.64 7.25 35.90 25.39 36.37 20.91 16.92 20.98 27.06 8.78 9.87 34.84 2.46 8.03 6.15 2 497729 Transcript 0 9.83 6.77 8.18 6.49 9.55 5.89 6.29 7.51 8.55 1.73 11.03 1.71 6.93 6.14 11.95 10.57 7.42 10.29 11.90 11.30 2.78 2.92 3.38 3 474037 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 491101 Transcript 0 2.08 1.09 0.49 0.18 0.24 0.66 1.30 0.92 0.49 0.15 4.09 1.09 1.93 1.31 3.94 1.60 1.18 1.43 0.64 2.48 0.31 0.37 0.26 5 467003 Transcript 0 3.41 10.05 3.33 5.19 4.30 6.02 3.26 1.00 1.49 1.58 4.85 3.54 9.44 3.36 3.15 1.91 3.45 1.43 2.89 5.19 0.13 2.20 0.71 6 475179 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 1.34 6.84 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 2.76 8.71 7 396421 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 355326 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 0.00 0.17 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.00 3.39 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.95 0.00 0.00 0.00 0.71 0.00 0.00 0.00 11 ER1c ExonRegion 0 0.00 4.07 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.94 0.00 0.00 0.00 2.13 0.00 0.00 0.00 12 ER1d ExonRegion 1 16.70 14.77 6.10 2.04 16.11 19.89 13.15 1.50 5.61 2.77 40.17 0.00 0.00 23.97 8.89 31.01 51.74 9.92 10.73 14.66 2.83 8.70 12.96 13 E1a_E2a KnownJunction 1 45.34 35.59 12.74 4.13 36.50 41.00 31.66 4.19 13.74 4.57 99.50 0.00 0.00 49.39 32.26 66.48 115.85 21.47 14.40 33.94 8.96 17.51 28.26 14 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 11.53 0.00 0.00 0.00 1.67 5.05 0.00 0.00 2.18 0.00 0.00 3.74 0.00 8.66 0.00 0.00 2.88 0.00 15 ER2a ExonRegion 0 15.10 8.55 5.77 3.75 14.80 12.92 8.74 4.17 6.56 4.00 30.76 4.39 3.52 12.28 10.03 25.83 43.69 10.41 3.28 25.72 7.32 10.85 8.81 16 E2a_E4a KnownJunction 0 0.00 0.00 0.00 8.19 0.00 2.90 0.00 4.68 2.78 0.00 2.11 0.00 0.00 2.24 0.00 0.00 0.00 4.19 0.00 10.80 6.30 3.12 0.00 17 ER2b ExonRegion 0 9.07 5.23 1.40 5.45 0.00 3.27 3.50 3.46 4.94 5.00 10.08 4.33 14.07 1.74 5.80 6.79 13.68 6.73 0.00 19.45 4.72 4.17 0.21 18 E3_Aa NovelBoundary 0 10.96 6.71 23.74 16.58 8.40 2.90 2.25 9.36 9.81 5.94 10.42 0.00 0.00 4.59 11.00 7.35 17.30 21.02 4.80 5.69 13.53 0.00 4.35 19 ER3a ExonRegion 0 1.96 0.00 0.00 1.36 0.00 3.40 0.00 0.00 0.00 1.21 1.72 0.00 6.40 0.30 0.00 0.00 3.54 1.85 1.74 0.04 0.00 0.61 0.00 20 E3_Da NovelBoundary 0 7.11 12.23 27.85 26.47 0.00 2.90 6.49 31.50 8.39 14.56 7.48 0.00 21.43 0.00 0.00 31.53 12.90 34.74 17.32 14.57 8.03 14.27 3.93 21 E3a_E4a KnownJunction 1 0.00 0.00 1.54 1.70 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 21.26 0.00 0.00 0.00 0.00 2.07 0.00 3.07 0.00 0.00 0.00 22 ER4a ExonRegion 1 3.33 8.15 16.88 28.10 7.75 8.81 6.92 23.31 20.03 13.21 49.64 6.29 12.51 22.58 13.52 24.13 56.19 34.40 20.00 34.06 7.64 11.15 14.43 23 E4_Da KnownBoundary 0 0.00 0.00 10.38 39.86 0.00 0.00 0.00 31.46 3.18 2.95 0.00 0.00 0.00 0.00 0.00 3.67 0.00 31.79 4.61 0.00 0.00 0.00 7.00 24 E4_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E4b_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E4b_E5a KnownJunction 0 0.00 3.35 0.00 5.73 3.74 2.90 2.16 4.44 6.48 6.90 24.27 0.00 13.96 21.72 10.26 35.46 28.61 8.08 7.72 27.10 4.82 10.29 14.60 27 E4b_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 1.34 6.84 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 2.76 8.71 28 ER4b ExonRegion 1 8.47 24.40 33.09 62.69 37.46 42.18 18.54 62.22 45.70 14.91 63.79 4.33 23.45 30.86 26.11 59.44 66.02 75.76 60.52 74.47 17.63 31.25 41.11 29 ER4c ExonRegion 0 9.83 6.77 8.18 6.49 9.55 5.89 6.29 7.51 8.55 1.73 11.03 1.71 6.93 6.14 11.95 10.57 7.42 10.29 11.90 11.30 2.78 2.92 3.38 30 ER4d ExonRegion 0 1.06 0.00 0.14 0.00 1.04 0.00 0.07 0.00 0.27 0.00 2.26 3.61 6.51 2.26 2.26 1.65 0.00 1.44 6.72 0.24 2.20 0.00 0.49 31 ER4e ExonRegion 0 4.17 2.18 0.98 0.36 0.48 1.31 2.61 1.84 0.97 0.31 8.18 2.19 3.85 2.63 7.88 3.19 2.36 2.87 1.27 4.96 0.62 0.75 0.53 32 E4_Dd NovelBoundary 0 13.41 0.00 1.27 1.66 0.00 0.00 6.54 0.00 0.00 0.00 7.58 12.45 0.00 2.47 4.45 8.37 3.83 0.00 0.00 5.62 0.00 0.00 0.00 33 E5_Aa NovelBoundary 0 10.00 9.14 1.21 9.19 6.88 0.00 4.50 6.57 1.79 0.00 6.95 24.76 19.15 10.07 15.08 3.93 0.00 1.99 0.00 3.20 0.00 0.00 3.24 34 ER5a ExonRegion 0 7.21 13.96 6.69 9.75 12.85 10.62 13.90 4.68 8.46 7.32 45.73 28.54 63.77 24.59 9.35 24.87 35.15 9.37 9.29 43.40 2.26 8.24 5.03 35 E5_Ab KnownBoundary 0 70.38 73.93 19.63 15.72 35.06 32.48 54.85 15.16 27.69 24.39 103.71 37.06 86.20 58.86 25.84 128.43 89.95 18.78 50.73 132.44 30.46 73.91 77.85 36 ER5b ExonRegion 0 10.31 6.74 5.21 8.64 10.28 7.78 9.69 6.53 11.83 4.59 45.69 34.64 52.86 24.27 8.02 21.01 37.29 8.69 14.20 49.46 0.95 6.02 7.41 37 E5_Da KnownBoundary 0 41.19 31.05 37.64 62.16 15.96 21.69 23.05 47.97 77.29 37.55 60.07 39.61 48.21 17.31 0.00 77.84 49.09 7.59 8.75 47.49 9.33 11.88 11.78 38 ER5c ExonRegion 0 14.17 14.76 11.56 10.97 14.74 13.17 12.21 7.17 10.59 7.65 43.62 33.29 45.88 23.21 13.43 25.17 34.48 8.88 10.66 39.66 2.63 8.03 6.67 39 E5_Db KnownBoundary 0 125.87 254.56 89.03 49.78 92.53 49.18 74.63 61.16 60.91 65.33 55.33 30.46 27.11 60.57 76.52 54.52 50.02 32.67 33.98 66.79 30.15 34.35 40.63 40 ER5d ExonRegion 0 11.05 44.00 14.01 18.14 21.52 15.18 13.99 5.02 7.44 3.85 15.56 16.27 19.53 13.25 10.65 9.56 9.98 2.77 4.04 21.24 0.66 7.54 1.81 41 E5_Ac KnownBoundary 0 17.19 65.12 130.95 149.93 49.49 32.48 37.98 53.89 53.82 69.49 45.85 19.36 19.32 19.19 13.35 11.62 13.00 13.80 8.75 87.63 2.72 14.51 7.94 42 ER5e ExonRegion 0 55.12 50.63 38.32 25.73 29.32 15.91 19.30 13.79 10.62 11.25 35.07 25.42 28.08 24.88 35.26 23.13 21.23 9.98 10.93 36.39 3.35 11.08 8.00 43 ER5f ExonRegion 0 4.06 6.27 1.12 4.77 0.00 0.00 2.32 0.00 0.00 0.00 1.93 1.44 0.00 1.08 5.08 0.00 0.00 0.46 0.00 1.60 0.00 0.00 1.71