Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF347 Gene 0 32.32 47.91 31.57 35.06 40.90 28.69 31.11 23.19 31.48 23.81 0.56 20.21 17.22 13.11 11.26 14.74 12.38 35.17 31.82 56.50 16.44 20.91 26.39 2 452676 Transcript 0 3.75 1.02 4.33 3.24 0.33 2.75 2.65 4.76 5.68 5.13 0.00 2.16 6.32 4.88 4.95 2.23 0.00 7.39 11.99 9.38 6.10 2.34 5.76 3 391778 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 334197 Transcript 0 17.50 26.19 16.82 20.93 22.51 13.03 12.99 9.69 13.22 14.12 0.00 7.60 7.06 5.36 3.21 3.64 5.22 11.38 11.33 24.16 3.14 9.82 8.83 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 3.09 1.11 0.00 1.04 1.81 0.00 0.00 0.00 0.00 0.00 2.66 0.00 1.36 0.00 1.79 3.71 0.00 0.00 6 Ix Intron 0 14.43 10.97 18.88 15.19 11.69 4.42 10.41 7.63 9.10 7.25 0.00 2.43 2.24 1.18 2.06 3.10 2.60 14.10 10.66 19.73 5.17 2.35 5.70 7 Ix_SR1 SilentIntronRegion 0 14.66 11.34 19.59 15.76 11.90 4.50 10.78 7.79 9.45 7.45 0.00 2.52 2.33 1.23 2.13 3.09 2.63 14.57 10.85 20.43 5.22 2.44 5.71 8 E2_Aa NovelBoundary 0 3.70 6.12 20.31 9.59 11.04 2.78 1.63 4.64 5.44 3.20 0.00 6.30 0.00 0.00 4.45 0.00 0.00 7.01 4.24 21.35 0.00 0.00 0.00 9 E2_Ab NovelBoundary 0 7.26 3.35 18.07 18.05 3.48 4.88 4.33 5.75 11.02 9.11 0.00 0.00 6.66 0.00 0.00 0.00 0.00 14.59 0.00 12.59 2.72 0.00 7.77 10 ER2a ExonRegion 0 0.30 0.00 0.00 0.39 0.76 0.52 0.76 0.00 0.18 2.29 0.00 0.00 0.00 1.62 0.00 0.42 0.00 3.70 3.19 5.17 0.94 0.60 0.00 11 ER2b ExonRegion 0 18.45 9.29 4.68 7.29 16.10 7.58 16.97 2.88 4.06 10.23 0.00 0.00 7.74 13.13 5.51 6.69 1.76 37.32 12.16 32.77 19.28 12.47 15.37 12 E2_Da NovelBoundary 0 6.59 17.04 24.45 19.31 8.23 4.88 11.39 12.32 14.15 6.90 0.00 0.00 0.00 2.12 0.00 3.85 4.11 5.39 9.32 17.26 0.00 0.00 3.41 13 E2a_E3a KnownJunction 0 23.19 15.98 13.78 12.02 51.95 4.77 11.53 7.48 6.45 12.44 0.00 7.20 13.64 9.59 8.90 3.67 4.68 57.62 4.71 33.43 25.82 8.63 18.10 14 ER3a ExonRegion 0 8.17 6.23 13.12 5.87 9.71 7.41 8.72 7.06 11.99 11.08 0.00 0.00 3.77 9.25 6.56 4.07 0.49 26.76 12.77 21.29 13.38 4.89 10.66 15 E3_Da NovelBoundary 0 13.56 17.04 8.10 16.75 0.00 0.00 10.33 2.55 13.43 8.19 0.00 12.60 0.00 2.12 13.35 12.65 0.00 29.18 22.59 23.14 8.71 11.02 11.78 16 E3a_E4a KnownJunction 0 2.74 0.00 1.30 0.00 0.00 0.00 0.00 2.18 3.33 1.67 0.00 0.00 7.95 4.47 4.82 0.00 0.00 0.00 8.85 2.81 2.29 0.00 4.18 17 E3a_E4b KnownJunction 0 0.00 0.00 16.76 16.58 3.31 10.33 8.79 6.57 13.92 19.74 0.00 0.00 0.00 7.06 4.70 18.54 4.11 23.50 26.17 37.52 20.32 8.51 16.22 18 Ix Intron 0 7.96 9.31 10.15 11.95 10.50 6.00 9.30 6.74 8.42 6.70 0.00 6.41 5.82 4.84 2.51 3.89 2.16 7.21 15.10 12.17 1.80 5.45 6.72 19 Ix_AR1 ActiveIntronRegion 0 6.02 9.28 11.07 13.96 10.69 5.48 9.34 7.59 9.60 6.79 0.00 6.51 4.47 4.95 2.40 4.11 1.78 7.22 16.61 12.21 1.61 6.39 6.49 20 Ix_SR1 SilentIntronRegion 0 13.92 9.59 7.68 6.29 10.19 7.69 9.44 4.37 5.13 6.62 0.00 6.27 9.98 4.64 2.90 3.32 3.34 7.37 10.94 12.38 2.40 2.72 7.57 21 E4_Aa NovelBoundary 0 6.89 8.42 4.14 8.32 22.58 8.63 4.11 0.00 6.08 5.51 0.00 0.00 13.15 0.00 0.00 0.00 0.00 0.00 4.80 6.20 0.00 0.00 0.00 22 ER4a ExonRegion 0 4.76 2.03 7.35 6.47 0.67 5.50 5.30 7.35 8.03 8.60 0.00 4.33 4.69 5.28 5.08 4.46 0.00 14.78 15.13 15.96 9.92 4.69 7.34 23 ER4b ExonRegion 0 23.03 22.88 29.25 23.71 29.60 27.45 35.77 17.73 29.09 31.13 0.00 7.07 15.17 12.69 8.61 17.11 11.06 39.22 30.76 55.04 25.96 14.99 29.92 24 E4a_E5a KnownJunction 0 56.16 25.06 10.20 17.68 31.41 16.41 20.31 14.05 28.73 25.63 0.00 12.00 33.28 16.78 0.00 11.71 4.77 36.15 25.13 65.00 17.05 9.00 22.54 25 ER5a ExonRegion 0 34.13 51.66 33.13 36.76 43.31 31.17 33.79 25.69 34.52 24.19 0.75 23.49 18.99 14.25 12.82 17.03 13.79 38.88 36.02 62.04 18.40 22.75 29.25 26 E5_Da KnownBoundary 0 52.68 39.40 27.70 32.90 36.33 12.89 21.73 16.84 22.80 26.75 0.00 0.00 0.00 11.77 4.45 7.09 11.59 23.05 28.05 49.15 10.44 24.68 11.01 27 ER5b ExonRegion 0 34.71 52.38 33.63 41.46 44.25 25.54 25.23 19.39 26.27 25.95 0.00 15.21 14.12 9.09 6.42 6.85 10.44 19.06 19.48 43.14 5.33 19.04 17.65