Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF677 Gene 0 7.04 14.41 15.12 10.33 12.23 10.56 15.85 10.23 4.18 9.52 1.29 3.17 4.94 2.63 6.03 5.44 4.48 10.23 11.32 14.60 4.35 4.44 6.47 2 333952 Transcript 0 11.43 28.12 20.04 16.34 20.88 54.24 35.07 15.41 7.69 18.48 0.16 0.44 1.05 1.79 6.36 6.56 4.56 28.07 22.25 31.44 13.36 6.18 12.86 3 416063 Transcript 0 0.08 1.17 1.60 1.47 1.03 0.85 1.32 1.40 0.48 1.94 0.00 0.00 0.00 0.25 0.22 0.46 0.51 3.20 1.84 3.52 0.42 0.40 0.34 4 ER1a ExonRegion 0 12.75 27.50 13.39 9.78 13.31 78.35 44.09 10.20 10.44 12.04 0.00 0.00 0.00 0.45 4.21 3.94 1.98 19.03 10.11 27.55 17.91 6.98 17.25 5 E1_Da NovelBoundary 0 3.11 0.00 0.00 5.39 0.00 2.50 7.68 0.00 1.22 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.65 8.00 0.00 2.72 2.63 15.71 6 E1a_E2a KnownJunction 0 44.45 93.60 34.36 25.87 50.25 255.31 143.97 29.78 24.13 31.19 0.00 0.00 0.00 2.47 22.99 15.30 11.59 76.52 45.84 92.04 55.17 19.23 50.02 7 I1_AR1 ActiveIntronRegion 0 2.99 5.76 13.04 9.71 7.58 6.00 7.21 6.89 4.41 14.13 0.00 0.00 0.80 0.58 5.23 5.18 5.04 38.29 99.49 19.43 14.83 6.33 17.21 8 ER2a ExonRegion 0 25.64 58.43 41.02 42.29 53.67 118.01 64.59 39.85 20.61 53.78 0.00 0.00 2.77 3.00 14.47 17.04 14.18 92.99 71.07 82.23 28.28 13.67 30.86 9 E2a_E3b KnownJunction 0 3.78 39.80 49.79 42.45 37.95 19.42 33.96 36.93 9.00 52.41 0.00 0.00 0.00 6.83 8.90 15.47 8.13 50.66 55.06 60.98 16.06 11.21 11.27 10 ER3a ExonRegion 0 0.08 1.17 1.60 1.47 1.03 0.85 1.32 1.40 0.48 1.94 0.00 0.00 0.00 0.25 0.22 0.46 0.51 3.20 1.84 3.52 0.42 0.40 0.34 11 ER3b ExonRegion 0 7.64 21.34 44.63 34.80 28.85 29.82 28.88 42.76 18.40 53.52 0.00 0.00 1.84 4.66 9.38 14.13 12.63 41.45 37.44 63.61 33.69 13.56 7.11 12 E3a_E4a KnownJunction 0 6.52 17.76 49.97 45.95 18.17 29.02 14.18 55.16 26.48 76.64 0.00 0.00 6.82 4.83 17.80 4.36 22.63 51.86 45.46 96.00 80.19 29.27 22.71 13 E4_Aa NovelBoundary 0 0.00 6.58 0.00 5.36 4.24 0.00 4.42 0.00 1.79 0.00 0.00 0.00 0.00 0.00 9.64 0.00 0.00 4.73 4.33 3.20 0.00 8.51 0.00 14 ER4a ExonRegion 0 8.77 28.26 62.75 57.99 18.49 26.09 25.20 48.23 26.98 71.68 0.00 0.00 0.46 4.66 14.11 19.18 12.35 97.13 79.72 98.22 41.34 28.15 33.49 15 E4_Da NovelBoundary 0 2.96 34.14 12.98 20.91 27.16 42.70 38.29 9.41 6.94 26.67 0.00 0.00 0.00 0.00 0.00 7.52 3.83 50.95 45.18 46.66 21.62 20.33 12.29 16 E4a_E5a KnownJunction 0 0.00 0.00 30.42 9.86 16.30 35.26 36.13 16.02 0.00 12.68 0.00 0.00 0.00 0.00 10.75 8.72 0.00 12.60 18.73 18.60 13.28 5.14 0.00 17 I4 Intron 0 10.99 49.86 21.56 25.80 20.80 28.38 32.20 23.26 13.27 30.76 0.00 0.35 2.84 3.43 3.27 5.31 5.35 46.97 41.09 53.92 17.92 22.61 12.43 18 I4_AR1 ActiveIntronRegion 0 11.25 50.34 21.77 25.02 20.85 28.12 32.39 23.50 13.62 31.01 0.00 0.38 2.94 3.40 3.07 4.91 5.10 46.51 40.62 54.50 17.65 23.28 12.34 19 I4_AR3 ActiveIntronRegion 0 8.10 44.94 19.40 35.37 20.47 31.89 30.38 20.78 9.39 28.31 0.00 0.00 1.64 3.82 5.58 10.11 8.42 53.06 47.38 47.93 21.50 15.05 13.73 20 ER5a ExonRegion 0 9.27 17.51 15.24 12.14 14.02 13.22 20.43 13.07 5.80 12.41 1.93 4.38 5.97 3.21 8.38 6.93 5.62 11.15 12.43 18.88 5.25 6.91 8.87 21 E5_Da KnownBoundary 0 17.19 36.31 25.93 22.94 27.50 12.49 14.40 14.62 0.00 23.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.48 11.95 3.26 0.00 5.88 0.00 22 ER5b ExonRegion 0 2.33 10.83 12.79 7.55 6.71 4.92 7.57 6.31 0.74 5.50 0.00 0.08 0.01 0.15 0.71 0.62 0.34 3.18 5.31 5.02 0.00 1.72 0.59 23 E5_Db NovelBoundary 0 3.48 0.00 5.20 7.56 20.54 7.67 8.79 6.90 7.67 6.07 2.37 0.00 0.00 0.00 0.00 4.19 4.58 2.03 0.00 6.26 2.78 3.06 4.01 24 E5b_E6a KnownJunction 0 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E6_Aa NovelBoundary 0 257.16 171.42 769.13 646.80 187.61 156.73 222.67 705.45 745.22 581.24 105.82 76.07 62.82 29.37 71.20 234.13 238.99 837.36 193.79 242.95 107.43 70.23 177.73 26 ER6a ExonRegion 0 5.74 11.57 12.42 6.34 10.26 6.87 13.71 6.18 2.51 4.39 1.46 3.83 6.66 3.18 5.97 5.23 4.78 6.53 8.73 9.06 2.78 2.33 5.30 27 E6_Da NovelBoundary 0 21.26 11.12 20.84 9.66 7.13 9.99 5.70 0.00 0.00 8.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 2.88 0.00 0.00 3.67 28 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E7_Aa NovelBoundary 0 1024.63 779.33 1264.92 1355.51 925.98 589.21 1138.12 1237.93 1162.81 1066.34 226.90 154.70 128.08 130.85 238.83 825.68 658.53 1367.75 559.73 977.49 408.16 241.57 811.63 30 ER7a ExonRegion 0 8.14 11.34 16.59 10.82 15.77 5.26 7.70 9.49 1.81 5.78 0.00 0.00 0.00 0.00 0.00 1.46 0.00 3.69 4.17 6.10 0.00 0.51 0.48