Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC011466.2 Gene 0 13.24 7.54 6.83 6.86 11.76 3.71 8.24 5.41 6.13 6.53 4.31 10.32 13.63 17.10 19.81 14.34 17.61 9.07 7.31 12.40 4.81 2.99 6.97 2 357055 Transcript 0 4.92 2.94 3.65 3.25 4.61 2.52 4.28 2.60 3.29 3.64 1.11 5.30 5.07 12.87 15.81 8.42 11.07 7.73 4.92 7.02 3.12 1.28 4.91 3 IG47_AR1 ActiveIntergenicRegion 0 6.33 2.86 1.28 4.60 4.08 2.26 3.62 3.06 7.13 4.70 3.50 1.25 2.04 11.67 7.03 14.35 5.41 7.10 4.85 5.11 5.93 1.47 1.55 4 ER1a ExonRegion 0 9.90 3.81 0.85 1.00 13.82 1.72 4.96 2.14 4.95 3.20 1.79 3.34 0.00 21.46 22.09 23.64 21.96 10.70 10.52 13.00 7.60 0.00 8.24 5 E1_Da NovelBoundary 0 6.96 0.00 0.00 6.79 16.81 4.66 1.85 1.56 20.43 3.87 7.79 0.00 0.00 10.07 19.90 3.85 29.45 6.55 8.38 3.20 3.09 6.25 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 1.45 0.00 0.00 0.00 0.00 2.47 10.75 0.00 3.27 3.40 0.00 0.00 3.09 0.00 0.00 7 I1 Intron 0 4.20 2.46 3.68 2.14 4.81 1.19 2.22 1.28 3.48 2.91 2.10 8.77 7.40 8.05 11.75 7.92 12.79 5.24 5.33 7.25 2.66 1.23 3.09 8 I1_AR1 ActiveIntronRegion 0 2.09 2.51 3.15 1.00 1.32 2.25 3.91 0.63 5.90 2.95 2.86 2.64 4.01 6.85 14.00 13.18 18.72 2.95 0.78 8.39 2.17 2.57 2.89 9 I1_AR3 ActiveIntronRegion 0 7.76 3.89 6.11 5.83 6.40 1.17 2.74 1.64 4.99 4.90 3.39 10.47 8.88 13.58 18.69 13.24 23.67 12.88 11.17 14.57 5.62 0.66 3.28 10 Ix Intron 0 17.98 15.94 41.83 30.77 24.91 16.92 16.71 26.72 33.37 33.01 15.55 7.32 11.39 33.86 30.21 27.31 38.82 51.64 38.25 23.72 19.68 7.91 18.47 11 Ix_AR3 ActiveIntronRegion 0 18.63 18.21 52.90 47.15 40.84 14.81 22.60 32.87 30.29 33.94 16.23 11.19 9.11 30.91 28.02 25.11 41.99 41.42 36.55 26.93 18.61 7.06 13.91 12 Ix_AR2 ActiveIntronRegion 0 16.81 13.28 64.30 51.87 37.78 12.41 14.41 46.57 39.81 53.50 24.45 0.00 11.86 33.15 21.33 12.59 48.54 40.22 23.05 31.16 17.50 9.31 3.28 13 Ix_AR1 ActiveIntronRegion 0 18.33 15.98 39.61 27.22 21.01 17.44 15.59 25.46 34.96 33.12 15.56 6.51 12.39 34.71 31.54 28.79 38.66 55.70 39.06 23.12 20.63 8.22 19.94 14 Ix_SR1 SilentIntronRegion 0 7.00 3.24 17.80 5.52 13.82 20.04 8.64 10.62 13.65 16.74 7.69 6.29 2.57 33.10 17.75 14.29 20.43 26.70 37.77 15.55 6.19 5.56 19.44 15 E2_Aa NovelBoundary 1 10.96 19.27 20.64 10.12 11.71 4.94 18.11 5.22 9.40 14.51 0.00 0.00 26.46 12.48 28.80 3.93 39.46 32.42 18.64 17.39 27.49 5.33 19.46 16 ER2a ExonRegion 0 3.45 5.13 13.56 11.27 14.79 6.01 5.58 8.54 12.08 19.54 3.00 3.99 14.35 17.86 31.88 17.67 31.43 32.69 15.81 17.25 9.44 3.89 10.55 17 E2_Da NovelBoundary 0 6.82 0.00 21.26 15.18 8.06 0.00 6.40 6.00 7.67 12.22 0.00 6.30 6.82 2.47 8.90 11.02 17.58 38.34 4.80 23.27 0.00 2.57 8.45 18 E2a_E3a KnownJunction 0 3.11 2.70 12.45 4.56 0.00 4.66 4.06 7.97 2.69 6.26 0.00 18.31 0.00 33.90 37.33 10.77 25.06 21.76 7.91 14.96 2.35 0.00 7.94 19 E3_Aa NovelBoundary 0 3.26 11.71 15.70 8.72 23.60 0.00 11.70 10.31 7.87 18.16 0.00 7.35 0.00 7.42 6.30 12.39 27.21 8.29 0.00 7.99 6.05 0.00 7.60 20 ER3a ExonRegion 0 13.59 7.19 5.36 3.00 2.13 8.50 14.49 3.01 4.03 6.18 1.32 9.10 2.58 29.02 41.75 8.27 22.91 9.85 10.99 13.63 2.81 1.48 13.28 21 E3_Da NovelBoundary 0 10.89 24.07 5.50 15.48 12.73 15.50 18.33 8.79 10.01 5.83 0.00 5.85 6.82 4.94 0.00 11.54 17.67 12.97 4.42 9.08 0.00 0.00 15.62 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 2.59 0.00 0.00 4.77 0.00 3.86 0.00 0.00 0.00 0.00 23 Ix Intron 0 10.85 6.18 9.20 9.88 10.93 5.10 9.66 5.59 8.00 7.13 4.87 12.86 17.24 16.95 22.27 13.69 25.82 16.05 5.81 14.97 4.40 1.27 8.16 24 Ix_SR1 SilentIntronRegion 0 10.85 6.18 9.20 9.88 10.93 5.10 9.66 5.59 8.00 7.13 4.87 12.86 17.24 16.95 22.27 13.69 25.82 16.05 5.81 14.97 4.40 1.27 8.16 25 E4_Aa NovelBoundary 1 0.00 6.25 6.06 7.52 4.33 2.90 2.08 4.64 1.79 8.46 0.00 5.85 0.00 7.77 37.83 8.37 26.74 14.72 8.85 16.36 12.91 0.00 0.00 26 ER4a ExonRegion 0 4.15 3.02 6.42 4.98 11.70 1.08 5.50 6.14 5.45 3.44 1.01 5.44 13.27 15.84 21.94 14.58 12.10 12.32 1.91 5.27 5.29 1.03 10.40 27 E4_Da NovelBoundary 0 6.59 2.70 7.04 16.18 26.23 2.67 7.07 6.33 18.11 8.84 2.42 12.30 0.00 14.48 19.41 8.29 23.75 20.31 3.48 9.46 16.31 0.00 4.27 28 E4a_E5a KnownJunction 0 3.63 0.00 1.63 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 Ix Intron 0 6.77 2.85 4.38 4.87 11.77 2.57 6.62 5.67 3.31 3.42 0.77 10.61 13.30 12.92 14.92 5.94 13.20 2.94 4.46 8.09 3.53 2.92 2.94 30 Ix_SR1 SilentIntronRegion 0 6.77 2.85 4.38 4.87 11.77 2.57 6.62 5.67 3.31 3.42 0.77 10.61 13.30 12.92 14.92 5.94 13.20 2.94 4.46 8.09 3.53 2.92 2.94 31 E5_Aa NovelBoundary 0 13.56 3.22 2.60 1.70 4.24 7.27 12.72 6.90 4.20 1.26 2.63 7.50 0.00 2.47 0.00 4.36 4.11 0.00 0.00 12.02 0.00 3.12 0.00 32 ER5a ExonRegion 0 14.04 7.59 0.58 5.01 7.77 7.53 13.18 0.01 4.55 1.40 2.40 19.04 17.77 16.16 24.79 13.53 12.37 4.91 9.22 14.98 6.45 4.29 3.68 33 E5_Da NovelBoundary 0 1137.83 983.05 2472.09 2278.07 889.98 668.08 1077.48 2511.55 2282.67 2201.55 424.58 413.68 417.34 285.19 588.42 907.54 901.17 2656.54 784.40 1138.94 790.07 310.76 923.12 34 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E6_Aa NovelBoundary 0 7.19 2.57 0.00 3.30 11.38 2.33 1.63 1.60 7.15 3.76 6.63 0.00 26.30 5.47 0.00 12.73 8.51 1.99 0.00 3.13 3.15 0.00 4.01 36 ER6a ExonRegion 0 1.16 4.46 0.08 0.51 1.47 2.01 4.36 0.00 0.00 0.94 0.00 4.98 7.36 8.10 10.36 6.39 1.81 1.51 3.49 5.77 0.05 0.13 4.74 37 E6_Da NovelBoundary 0 87.65 61.70 26.82 45.52 73.17 26.23 88.24 46.91 28.44 42.98 14.90 17.11 118.17 23.60 50.68 58.96 54.32 47.59 34.45 54.27 27.92 9.61 23.65 38 E6a_E7a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E7_Aa NovelBoundary 0 0.00 0.00 6.06 12.55 7.13 0.00 4.02 0.00 12.38 10.45 0.00 5.70 0.00 4.36 15.33 16.15 16.83 5.80 0.00 7.86 6.05 3.12 7.34 40 ER7a ExonRegion 0 5.00 1.44 6.42 6.97 4.42 2.63 3.13 3.04 6.95 7.25 1.83 3.55 5.34 11.47 17.90 17.57 12.45 11.27 3.01 7.52 5.22 5.38 8.33 41 E7_Da NovelBoundary 0 146.10 80.58 492.09 445.80 127.84 49.97 138.80 393.41 337.53 318.13 34.32 41.56 78.40 36.08 54.52 144.49 106.40 479.82 75.30 127.51 65.18 27.80 79.64 42 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 Ix Intron 0 13.48 8.93 7.58 7.64 9.43 4.16 9.77 9.45 11.10 9.65 5.50 20.55 11.85 17.54 22.46 30.98 21.02 21.23 11.68 13.96 7.23 4.83 16.29 44 Ix_SR1 SilentIntronRegion 0 13.48 8.93 7.58 7.64 9.43 4.16 9.77 9.45 11.10 9.65 5.50 20.55 11.85 17.54 22.46 30.98 21.02 21.23 11.68 13.96 7.23 4.83 16.29 45 E8_Aa NovelBoundary 0 0.00 3.16 3.40 11.02 32.00 0.00 3.75 14.38 10.21 17.65 4.79 0.00 15.58 47.97 48.46 36.40 13.46 4.31 8.94 12.08 0.00 5.57 7.85 46 ER8a ExonRegion 0 15.70 8.79 7.34 7.36 13.04 3.58 8.89 6.11 6.10 6.34 5.26 11.74 15.37 17.48 18.39 13.90 17.90 7.47 7.14 12.89 4.45 3.02 6.45