Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF415 Gene 0 32.91 95.87 57.08 54.21 36.92 48.44 26.43 44.46 43.51 41.61 0.04 1.30 1.50 0.97 2.00 0.64 1.04 26.31 25.02 46.45 9.54 28.55 16.99 2 440291 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 421033 Transcript 0 10.30 15.59 12.83 6.23 0.00 11.24 8.44 13.60 6.66 9.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.60 12.99 13.87 7.97 3.06 0.00 4 448501 Transcript 0 0.00 6.05 0.00 0.00 0.00 2.73 2.03 4.03 3.39 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 5 243643 Transcript 0 17.48 92.15 28.50 14.25 22.92 20.90 8.52 14.58 26.22 18.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.86 26.26 29.21 0.00 8.21 32.69 6 455735 Transcript 0 3.39 11.05 2.33 4.73 3.81 18.19 2.25 6.50 10.59 8.29 0.00 0.00 0.00 0.00 0.17 0.00 0.00 4.50 2.95 2.97 0.49 2.38 3.18 7 ER1a ExonRegion 0 30.76 36.74 10.29 6.81 8.74 36.43 11.47 6.91 9.63 6.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.56 14.65 28.23 19.83 17.50 18.79 8 E1_Da NovelBoundary 0 90.39 41.05 56.65 30.60 27.84 77.63 21.90 32.86 25.55 28.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.84 29.74 63.02 16.68 36.86 76.40 9 E1a_E2a KnownJunction 0 124.91 112.74 30.72 19.44 38.71 113.63 58.91 28.96 35.36 17.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.71 48.66 88.27 54.12 43.05 39.61 10 E1a_E6a NovelJunction 0 3.33 18.55 0.00 0.00 8.66 0.00 8.57 2.05 0.00 6.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 3.95 2.81 2.97 3.00 7.85 11 ER1b ExonRegion 0 64.26 66.21 19.07 11.07 19.59 69.61 32.09 17.42 21.00 11.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.65 28.29 52.68 36.23 30.25 29.13 12 Ix_SR6 SilentIntronRegion 0 9.10 7.80 31.88 13.22 6.10 4.20 7.41 11.32 7.40 8.81 0.00 0.00 0.00 0.39 0.17 0.00 0.00 5.59 2.21 11.53 0.76 0.00 2.70 13 Ix_AR5 ActiveIntronRegion 0 11.84 14.75 31.85 17.07 13.54 7.48 8.40 12.93 9.98 8.99 0.00 0.00 0.00 0.14 0.91 0.57 0.78 9.91 7.24 11.96 2.71 1.24 8.20 14 Ix_AR3 ActiveIntronRegion 0 8.60 27.72 21.67 15.55 23.49 6.09 10.92 12.14 8.69 12.85 0.00 0.00 0.00 0.00 0.80 0.09 0.00 10.51 7.81 15.17 2.89 0.81 5.67 15 E2_Aa NovelBoundary 0 0.00 6.71 20.58 19.51 4.33 7.15 3.84 16.59 6.37 8.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.34 3.95 0.00 3.03 3.06 0.00 16 ER2a ExonRegion 0 25.81 34.55 21.73 14.08 8.35 28.67 14.10 19.10 19.42 20.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.85 14.45 36.90 19.67 20.91 17.94 17 E2a_E3a KnownJunction 0 6.37 29.40 11.53 14.85 4.33 26.41 8.57 9.98 19.04 15.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.69 0.00 31.70 6.30 17.39 7.17 18 E2a_E6a NovelJunction 0 0.00 9.80 3.34 9.22 4.33 8.35 0.00 7.97 1.53 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.73 4.42 2.43 3.15 0.00 20.32 19 E3_Aa NovelBoundary 0 6.67 2.57 11.09 10.59 6.45 7.33 0.00 4.07 2.84 6.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 8.95 0.00 0.00 11.52 20 ER3a ExonRegion 0 9.17 63.85 35.88 24.42 22.82 37.62 17.26 31.28 38.84 34.81 0.00 0.14 0.74 0.39 0.96 0.12 0.03 40.16 35.75 58.33 17.36 28.24 18.86 21 E3a_E4a KnownJunction 0 3.26 6.58 0.00 1.50 3.14 16.07 0.00 2.55 7.44 7.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 4.35 22 E3a_E4b KnownJunction 0 0.00 2.50 0.00 0.00 0.00 2.10 0.00 0.00 0.00 6.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.79 4.05 0.00 0.00 0.00 0.00 23 E3a_E5a KnownJunction 0 10.30 15.59 12.83 6.23 0.00 11.24 8.44 13.60 6.66 9.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.60 12.99 13.87 7.97 3.06 0.00 24 E3a_E6a KnownJunction 0 17.48 92.15 28.50 14.25 22.92 20.90 8.52 14.58 26.22 18.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.86 26.26 29.21 0.00 8.21 32.69 25 E4_Aa NovelBoundary 0 0.00 20.00 5.56 8.72 4.24 8.01 9.41 8.34 14.32 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 4.52 5.88 0.00 2.57 0.00 26 ER4a ExonRegion 0 3.53 15.52 4.65 7.96 4.48 20.30 4.51 10.46 13.75 8.89 0.00 0.00 0.00 0.00 0.33 0.00 0.00 5.22 5.90 5.94 0.99 4.75 2.01 27 E4_Ab KnownBoundary 0 9.93 21.25 11.59 12.95 16.21 26.75 12.32 11.79 16.49 10.80 0.00 0.00 0.00 0.00 4.45 0.00 0.00 2.24 13.27 6.39 0.00 0.00 0.00 28 ER4b ExonRegion 0 7.87 31.45 6.86 5.59 10.73 15.96 10.08 17.16 16.13 15.24 0.05 0.12 0.04 0.03 0.95 0.00 0.15 6.15 7.29 15.33 2.84 8.96 3.57 29 E4a_E5a KnownJunction 0 0.00 6.05 0.00 0.00 0.00 2.73 2.03 4.03 3.39 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 30 E4a_E6a KnownJunction 0 3.78 17.96 1.83 1.60 0.00 25.38 8.79 18.28 9.64 11.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.06 4.52 9.78 4.76 2.82 4.35 31 E5_Aa NovelBoundary 0 1061.60 1190.12 1640.66 1850.38 920.97 655.36 1509.13 1734.06 1472.47 1661.84 610.89 262.89 279.53 223.97 562.09 1279.58 1007.76 2067.61 1217.54 1398.32 563.72 455.88 981.93 32 ER5a ExonRegion 0 11.71 37.60 4.79 8.84 5.00 11.06 5.97 10.67 13.07 9.80 0.95 15.86 34.55 21.18 44.82 9.13 10.10 6.56 13.20 27.49 9.98 13.33 6.17 33 E5_Da NovelBoundary 0 873.93 1079.94 1634.27 1646.81 797.71 705.84 1164.92 1703.14 1733.81 1463.90 488.49 177.36 224.17 165.93 317.70 779.11 780.18 1625.14 626.28 1183.36 739.41 374.01 858.67 34 E5a_E6a KnownJunction 0 17.04 53.54 7.04 24.67 4.33 10.28 0.00 10.43 16.81 10.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.76 8.56 25.69 3.15 15.37 6.66 35 ER6a ExonRegion 0 40.42 120.43 67.94 67.61 45.01 58.53 32.16 53.28 52.52 50.15 0.00 0.89 0.22 0.21 0.23 0.42 0.93 30.25 30.13 54.38 9.99 34.03 20.58 36 E6_Da KnownBoundary 0 33.12 52.03 136.28 95.39 50.76 56.33 16.78 63.58 57.70 71.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.48 17.88 58.48 0.00 36.80 11.18 37 ER6b ExonRegion 0 20.38 41.09 75.00 51.39 36.48 24.39 17.79 40.29 28.22 32.85 0.00 0.82 0.00 0.00 0.47 0.00 0.00 8.30 5.25 23.51 1.58 15.70 3.83