Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF160 Gene 0 9.88 15.51 5.07 7.10 5.95 7.14 6.50 6.54 8.99 9.64 6.74 11.82 10.52 13.36 7.89 10.16 14.56 10.36 10.10 10.94 15.44 11.42 11.53 2 355147 Transcript 0 5.14 1.20 1.88 2.10 8.04 5.54 3.62 3.53 2.06 4.56 3.17 1.28 2.35 1.69 11.32 3.06 4.85 0.95 3.29 1.25 0.98 1.23 4.86 3 418871 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 429604 Transcript 0 2.79 1.39 4.22 1.49 2.11 0.50 2.55 9.62 2.19 3.27 8.81 1.05 0.00 17.27 13.59 24.33 10.56 15.42 16.56 6.74 9.15 27.94 9.77 5 270457 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 4.42 0.00 0.00 0.00 0.00 6 391777 Transcript 0 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.10 0.76 0.00 0.00 0.00 0.00 1.21 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 22.11 16.58 9.35 7.39 12.94 26.96 19.46 10.50 12.34 15.11 20.33 1.07 3.48 22.77 20.33 31.68 44.00 45.09 33.13 23.19 59.67 17.17 44.86 8 E1_Da NovelBoundary 0 0.00 6.18 8.34 3.16 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 21.04 0.00 0.00 0.00 8.59 0.00 3.84 9 E1a_E2a KnownJunction 0 2.96 2.63 9.40 1.27 0.00 0.00 0.00 12.94 14.24 18.67 25.90 0.00 6.17 16.19 0.00 7.52 74.89 8.25 4.14 20.01 113.05 5.27 4.10 10 Ix_AR4 ActiveIntronRegion 0 27.09 2.93 11.62 7.58 10.17 5.13 2.81 2.42 0.40 1.15 1.93 8.66 0.00 2.92 5.92 2.85 0.00 3.70 4.59 2.13 2.82 1.00 6.70 11 Ix_AR3 ActiveIntronRegion 0 23.08 7.76 12.56 9.92 17.06 3.67 6.74 3.49 4.83 2.51 3.68 8.45 2.54 3.47 6.81 3.25 6.54 4.02 9.16 6.80 2.39 1.22 4.23 12 E2_Aa NovelBoundary 0 32.97 6.71 11.47 2.06 0.00 5.79 6.67 3.33 4.69 1.18 0.00 0.00 6.33 4.83 0.00 0.00 13.56 4.89 4.33 3.26 2.78 5.88 8.71 13 ER2a ExonRegion 0 1.54 6.49 18.05 6.72 6.31 6.81 4.48 16.15 17.76 19.46 37.90 4.79 2.35 46.36 23.56 34.21 64.72 35.35 36.40 41.44 74.69 25.45 27.79 14 E2_Da NovelBoundary 0 3.70 0.00 9.52 7.06 4.33 0.00 1.81 9.36 11.05 13.73 2.63 5.85 0.00 11.71 33.75 22.90 13.18 33.16 35.67 18.22 14.52 7.59 36.02 15 E2a_E3a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 11.17 1.50 1.02 6.84 0.00 0.00 18.89 13.47 26.23 8.42 12.97 18.45 5.88 0.00 34.29 7.09 16 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 4.42 0.00 0.00 0.00 0.00 17 E2a_E4a KnownJunction 0 0.00 5.99 7.51 5.43 0.00 0.00 2.25 4.60 16.52 16.84 2.47 0.00 0.00 24.13 8.90 10.60 21.88 29.43 4.80 8.63 2.47 0.00 22.71 18 Ix Intron 0 10.09 4.85 5.22 0.00 5.10 3.50 0.63 0.00 0.88 0.81 3.69 0.00 1.88 5.24 2.93 5.67 3.15 9.64 3.04 5.07 8.40 0.99 8.40 19 Ix_AR1 ActiveIntronRegion 0 10.28 4.94 5.32 0.00 5.20 3.55 0.64 0.00 0.89 0.83 3.76 0.00 1.92 5.34 2.98 5.77 3.21 9.82 3.09 5.15 8.56 1.01 8.56 20 E3_Aa NovelBoundary 0 23.78 0.00 15.76 10.79 36.93 21.01 14.66 5.01 19.36 11.26 9.63 0.00 6.17 13.89 4.45 11.96 37.59 26.74 8.28 15.28 24.03 8.76 19.80 21 ER3a ExonRegion 0 5.58 2.77 6.61 2.97 4.22 1.00 5.10 8.07 2.88 5.53 10.78 2.10 0.00 15.65 13.72 22.43 12.70 17.86 14.67 7.61 18.30 21.59 12.46 22 E3_Ab KnownBoundary 0 22.37 9.01 17.77 13.15 15.37 9.82 12.85 15.24 6.94 10.58 14.48 6.30 0.00 12.60 13.35 17.69 13.00 21.43 20.99 19.56 34.16 20.45 26.55 23 ER3b ExonRegion 0 11.87 12.90 5.40 3.76 6.53 7.31 6.95 7.96 8.98 9.80 12.29 7.16 2.35 36.60 18.34 15.29 34.19 22.72 11.98 12.51 47.56 24.31 16.68 24 E3_Da NovelBoundary 0 16.23 2.89 18.36 3.80 4.33 2.90 8.39 4.07 11.72 15.63 14.95 0.00 0.00 19.54 22.25 30.85 25.53 5.51 31.53 18.86 29.84 14.21 24.76 25 E3a_E4a KnownJunction 0 6.74 14.80 1.83 1.83 12.99 0.00 18.72 20.21 11.49 6.88 16.43 6.30 0.00 43.62 6.30 15.98 26.65 17.95 0.00 14.64 19.15 36.80 15.45 26 Ix Intron 0 23.34 11.37 12.72 14.86 15.69 7.54 12.18 7.16 16.33 7.88 8.19 15.27 14.32 16.85 11.79 16.24 16.30 17.53 20.76 16.32 19.77 8.04 23.70 27 Ix_AR6 ActiveIntronRegion 0 4.85 2.97 2.40 0.50 4.28 0.96 0.56 1.18 4.29 1.47 3.37 1.15 0.00 8.42 5.27 0.40 5.80 5.60 6.66 4.15 13.59 5.35 3.99 28 Ix_SR3 SilentIntronRegion 0 25.65 9.40 13.69 15.59 10.47 7.24 9.18 9.82 19.19 12.24 8.50 9.97 12.55 20.01 17.09 14.59 21.43 31.16 29.50 17.61 27.08 8.68 25.58 29 Ix_AR5 ActiveIntronRegion 0 29.22 7.21 17.58 19.67 21.67 7.46 15.80 5.29 17.55 7.75 9.60 10.22 10.22 19.84 11.84 12.89 23.68 22.61 20.79 22.70 25.42 6.25 27.54 30 Ix_AR4 ActiveIntronRegion 0 21.87 8.63 22.68 24.24 22.88 7.56 11.53 10.33 13.34 9.20 5.19 21.20 15.55 19.82 12.05 22.60 25.99 18.60 15.74 23.26 30.56 5.87 30.60 31 Ix_AR3 ActiveIntronRegion 0 39.61 5.96 10.77 5.35 18.92 4.06 13.43 1.48 1.59 1.23 1.93 13.92 6.37 3.94 2.69 12.74 10.85 3.96 6.83 7.60 8.97 0.15 13.01 32 Ix_SR2 SilentIntronRegion 0 28.66 15.16 12.86 13.12 23.51 10.38 17.67 4.32 15.27 4.75 5.68 9.64 20.01 19.34 11.11 25.39 13.54 10.94 19.01 14.09 15.71 7.09 25.17 33 Ix_AR2 ActiveIntronRegion 0 32.44 21.61 15.89 25.37 22.99 8.25 18.97 5.88 22.82 9.89 12.73 31.26 24.60 17.40 12.81 18.80 14.85 17.56 27.79 18.36 12.86 13.21 29.70 34 Ix_AR1 ActiveIntronRegion 0 15.30 8.31 10.50 8.29 10.42 10.20 9.08 12.90 17.07 8.24 10.75 15.63 6.34 13.77 9.31 17.09 15.92 12.09 17.72 18.13 22.88 8.11 22.33 35 Ix Intron 0 12.82 19.51 6.45 10.26 18.92 11.11 5.35 2.60 13.01 3.45 13.66 14.40 1.95 10.85 5.77 12.01 13.33 7.43 14.48 17.19 16.67 13.68 26.69 36 Ix_AR1 ActiveIntronRegion 0 13.02 19.88 6.58 10.45 19.30 11.34 5.46 2.65 13.26 3.52 13.92 14.69 1.99 11.06 5.89 12.25 13.60 7.58 14.77 17.54 17.01 13.91 27.23 37 E4_Aa NovelBoundary 0 30.60 20.72 15.20 23.91 4.33 2.90 22.26 27.72 29.17 21.27 21.43 6.30 6.49 14.48 18.42 7.43 23.09 16.33 43.30 31.06 16.99 18.92 44.99 38 ER4a ExonRegion 0 24.23 47.86 14.97 3.32 13.42 29.43 14.52 24.66 29.27 24.12 27.54 32.47 17.12 76.69 24.47 44.83 69.65 41.57 42.26 45.14 49.66 35.59 68.03 39 E4_Da NovelBoundary 0 36.82 6.71 9.20 9.86 7.47 9.54 3.49 9.61 18.72 26.03 18.64 12.15 0.00 13.19 4.45 14.36 25.90 28.06 18.17 17.96 26.81 17.57 19.38 40 E4a_E6a KnownJunction 0 5.85 68.41 21.29 7.13 24.45 39.41 19.30 20.58 43.55 33.23 11.63 37.21 19.64 40.50 13.35 39.48 45.72 44.11 50.17 48.77 28.73 28.90 49.08 41 Ix Intron 0 21.21 14.01 11.34 16.02 13.74 5.68 12.69 11.04 14.24 11.32 8.87 15.27 11.99 9.81 11.65 14.08 17.38 11.74 14.97 13.69 16.13 16.87 20.29 42 Ix_AR2 ActiveIntronRegion 0 21.06 11.48 13.80 18.23 14.02 5.38 14.65 10.18 16.11 14.73 12.02 20.95 16.58 11.82 12.54 17.03 22.59 13.31 16.84 16.73 24.88 18.52 22.70 43 Ix_SR2 SilentIntronRegion 0 20.43 9.80 5.61 9.52 11.23 4.23 11.57 7.03 8.24 6.57 4.73 10.42 5.48 5.96 8.39 13.31 14.08 12.78 14.71 9.96 7.97 11.22 16.64 44 Ix_AR1 ActiveIntronRegion 0 16.88 12.68 13.93 17.82 17.57 11.27 7.70 11.96 17.93 9.18 7.00 9.36 8.34 11.04 13.23 12.80 15.46 7.21 14.36 16.28 14.15 15.78 23.29 45 Ix_SR1 SilentIntronRegion 0 27.01 29.22 12.14 19.58 13.72 3.77 14.01 19.32 16.09 12.28 9.18 13.80 14.15 9.84 13.38 8.69 10.87 9.98 11.01 9.53 8.44 23.14 17.29 46 ER5a ExonRegion 0 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.10 0.76 0.00 0.00 0.00 0.00 1.21 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 47 Ix Intron 0 26.77 12.45 9.69 11.60 17.47 5.99 15.12 6.31 12.77 11.16 10.25 9.98 12.61 7.13 9.75 12.13 8.08 6.37 2.60 12.15 12.59 19.55 17.97 48 Ix_SR1 SilentIntronRegion 0 27.10 12.65 9.83 11.79 17.75 6.08 15.37 6.41 12.97 11.34 10.42 10.14 12.81 7.24 9.91 12.32 8.21 6.47 2.64 12.35 12.79 19.80 18.26 49 E6_Aa NovelBoundary 0 24.97 25.32 19.13 21.58 7.72 37.36 13.82 24.97 34.64 14.24 20.16 12.15 27.27 4.53 6.30 8.72 20.76 7.79 17.88 34.90 14.46 20.70 22.88 50 ER6a ExonRegion 0 45.86 79.49 27.70 50.43 41.29 49.80 39.71 41.02 52.96 66.61 33.21 52.26 52.14 84.49 27.89 58.55 77.92 53.15 49.54 60.91 89.54 60.67 68.31 51 E6a_E7a KnownJunction 0 75.35 136.36 44.35 36.16 72.33 28.05 28.66 45.39 72.37 99.28 37.43 128.14 38.15 99.42 21.14 54.43 70.13 67.78 39.15 88.84 103.66 73.54 59.16 52 ER7a ExonRegion 0 68.45 107.65 44.11 65.94 50.36 41.86 38.76 54.10 82.30 90.12 56.74 94.14 70.93 96.65 42.84 78.80 107.14 79.48 76.23 86.94 118.21 98.20 85.16 53 E7_Da NovelBoundary 0 9.41 0.00 1.33 0.00 0.00 20.27 0.00 7.06 3.18 0.00 0.00 0.00 0.00 4.59 0.00 0.00 4.39 2.49 0.00 3.07 0.00 0.00 0.00 54 E7a_E8a KnownJunction 0 3.41 0.00 0.00 0.00 10.10 5.79 1.72 2.26 1.56 3.01 5.16 0.00 0.00 0.00 17.80 4.02 4.11 0.00 0.00 0.00 0.00 0.00 3.50 55 E7a_E9a KnownJunction 0 75.12 114.58 26.99 51.97 44.06 39.86 40.59 45.06 63.43 61.08 41.12 85.53 118.99 80.58 31.52 43.83 103.41 43.86 40.47 86.86 83.34 92.77 35.60 56 ER8a ExonRegion 0 6.86 2.41 3.77 4.19 5.99 5.29 5.53 4.80 2.55 6.12 1.17 2.55 4.69 3.37 4.83 2.10 5.59 1.90 6.57 2.51 1.96 2.46 6.23 57 E8_Da NovelBoundary 0 31.26 3.35 5.94 7.86 0.00 0.00 4.50 10.10 6.05 9.59 14.74 0.00 0.00 0.00 8.90 4.36 0.00 2.53 0.00 0.00 0.00 0.00 12.98 58 Ix_AR1 ActiveIntronRegion 0 14.21 1.71 2.51 0.92 3.38 0.00 2.05 0.50 3.06 1.64 0.00 1.80 6.80 1.53 4.25 2.55 2.84 0.00 1.40 1.22 0.63 0.60 0.84 59 ER9a ExonRegion 0 6.12 10.50 2.30 3.85 2.71 3.31 3.58 3.01 4.57 4.32 2.48 8.50 7.93 5.67 4.62 4.11 5.68 3.81 4.29 5.11 5.16 5.73 4.25