Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C19orf48 Gene 0 28.04 44.42 61.22 20.82 12.77 13.86 23.62 17.41 5.01 24.37 107.39 12.50 6.97 77.73 109.16 127.40 95.74 63.96 77.57 32.94 24.33 11.22 22.82 2 391812 Transcript 0 6.67 7.09 1.99 2.39 4.66 1.31 6.58 3.34 1.40 3.24 51.75 11.41 8.34 32.52 52.72 49.25 42.44 9.45 11.62 9.80 7.48 2.74 4.42 3 345523 Transcript 0 426.37 565.16 77.50 35.93 186.42 163.60 279.51 17.74 9.75 28.77 1305.01 17.41 25.65 857.15 1680.70 1402.03 985.60 168.43 986.85 267.24 195.22 96.08 237.14 4 391811 Transcript 0 173.55 259.28 210.76 68.14 82.95 85.27 132.40 56.17 21.61 86.02 793.45 43.29 9.38 638.28 816.70 792.07 648.63 311.35 473.03 154.25 126.71 61.46 138.02 5 418173 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 7 ER1b ExonRegion 0 38.88 51.42 41.76 12.06 26.87 24.28 38.18 9.78 5.68 18.87 133.46 0.97 0.89 107.65 160.73 160.22 98.17 69.71 137.35 43.07 24.09 13.89 32.14 8 E1_Da NovelBoundary 0 0.00 0.00 2.48 1.40 7.47 0.00 6.18 0.00 1.56 3.47 43.01 0.00 0.00 11.89 13.35 41.19 16.27 16.66 24.00 5.43 0.00 0.00 3.76 9 E1a_E2a KnownJunction 0 3.26 0.00 0.00 0.00 3.57 0.00 1.68 0.00 0.00 1.42 29.74 0.00 0.00 36.55 84.93 29.91 23.09 3.86 7.44 0.00 5.07 5.27 0.00 10 E1a_E3b KnownJunction 0 426.37 565.16 77.50 35.93 186.42 163.60 279.51 17.74 9.75 28.77 1305.01 17.41 25.65 857.15 1680.70 1402.03 985.60 168.43 986.85 267.24 195.22 96.08 237.14 11 I1 Intron 0 7.59 4.29 11.01 12.18 6.10 2.89 9.27 3.97 4.01 8.19 34.39 31.47 12.56 27.71 26.57 50.69 27.98 14.71 11.31 12.55 4.28 3.35 5.81 12 I1_AR1 ActiveIntronRegion 0 2.14 0.00 2.90 5.51 2.70 2.03 2.56 2.69 1.34 3.25 18.87 4.38 3.31 8.81 10.82 44.87 14.93 10.89 8.21 0.37 0.67 3.83 4.50 13 I1_SR2 SilentIntronRegion 0 7.31 2.55 8.24 9.42 4.39 3.02 8.74 2.84 3.65 8.26 28.26 18.35 4.74 21.83 13.50 44.27 21.08 14.73 7.60 12.25 4.89 1.35 6.05 14 I1_AR2 ActiveIntronRegion 0 15.37 7.54 16.23 20.04 10.06 4.54 13.65 5.02 5.14 10.82 50.58 47.89 17.53 47.04 43.37 76.47 35.28 17.79 18.67 13.37 5.46 3.87 10.19 15 I1_SR3 SilentIntronRegion 0 4.08 5.15 12.67 11.83 6.29 1.90 8.50 4.96 4.29 7.51 34.51 42.10 20.46 26.24 34.56 43.47 34.20 13.64 11.70 14.92 3.58 5.33 3.02 16 E2_Aa NovelBoundary 0 200.41 125.57 175.39 182.59 86.50 111.87 178.51 193.09 158.07 195.13 54.86 66.17 74.67 36.61 92.84 149.02 138.01 199.31 113.79 186.38 64.87 59.03 133.93 17 ER2a ExonRegion 0 16.17 28.36 6.11 5.98 15.07 5.23 20.37 7.64 3.99 7.13 54.77 31.70 18.59 40.54 58.71 75.08 49.88 23.03 24.83 32.30 14.36 5.68 17.67 18 E2_Da NovelBoundary 0 10.22 3.16 8.69 13.62 11.29 2.90 19.43 11.95 1.79 22.11 29.27 24.61 6.82 39.03 55.26 123.04 30.39 23.88 9.32 13.04 0.00 2.82 12.29 19 E2a_E3b KnownJunction 0 7.26 0.00 1.83 3.56 0.00 0.00 4.28 5.71 1.62 4.41 120.56 13.95 14.77 52.98 67.25 92.03 96.77 10.90 14.21 5.50 10.50 0.00 0.00 20 I2 Intron 0 1.56 0.00 0.00 0.00 1.98 1.36 0.98 0.00 0.00 0.00 8.57 13.18 2.85 8.97 18.80 4.39 9.76 0.00 0.00 3.15 0.00 0.00 2.17 21 I2_AR1 ActiveIntronRegion 0 1.58 0.00 0.00 0.00 2.04 1.40 1.01 0.00 0.00 0.00 8.83 13.51 2.94 9.24 19.31 4.52 10.05 0.00 0.00 3.24 0.00 0.00 2.19 22 E3_Aa NovelBoundary 0 0.00 0.00 9.79 7.96 3.40 0.00 7.82 4.68 1.74 13.70 10.37 0.00 0.00 0.00 5.93 23.41 16.64 26.41 0.00 2.88 0.00 0.00 0.00 23 E3_Ab NovelBoundary 0 0.00 0.00 1.51 3.56 0.00 0.00 4.11 0.00 0.00 0.00 16.32 12.15 0.00 2.47 4.45 15.21 4.39 3.73 4.42 2.43 10.26 0.00 4.35 24 ER3a ExonRegion 0 173.55 259.28 210.76 68.14 82.95 85.27 132.40 56.17 21.61 86.02 793.45 43.29 9.38 638.28 816.70 792.07 648.63 311.35 473.03 154.25 126.71 61.46 138.02 25 ER3b ExonRegion 0 398.70 629.44 538.37 183.79 196.60 190.16 289.19 147.61 45.02 202.57 1751.06 97.41 23.57 1156.41 1442.58 1813.81 1446.62 722.24 1018.12 355.11 310.01 140.01 321.93 26 E3_Da NovelBoundary 0 3.70 0.00 1.42 3.73 10.70 0.00 14.31 0.00 0.00 1.26 10.11 0.00 6.82 6.95 5.56 15.38 9.26 18.03 0.00 8.50 2.90 2.88 3.67 27 E3a_E4a KnownJunction 0 218.93 343.56 843.44 277.79 105.01 80.58 126.53 210.75 60.59 283.74 584.73 59.27 19.64 248.63 399.90 767.66 542.40 799.76 401.14 190.47 148.88 81.56 142.47 28 E3a_E5a NovelJunction 0 0.00 12.17 8.31 5.86 3.82 0.00 2.08 0.00 0.00 6.04 23.48 0.00 0.00 2.30 5.69 10.51 9.16 16.37 0.00 2.81 5.44 0.00 0.00 29 I3_AR1 ActiveIntronRegion 0 3.94 3.79 14.90 6.30 8.30 0.23 9.70 4.22 1.37 6.28 16.09 26.10 18.35 15.20 16.50 25.24 21.06 9.33 6.98 7.68 2.24 1.03 1.46 30 E4_Ab NovelBoundary 0 72.90 74.53 260.04 98.06 36.42 24.02 41.47 86.30 14.26 74.86 152.14 48.17 47.07 89.41 184.07 246.94 119.40 191.64 63.15 44.68 27.00 20.64 41.66 31 ER4a ExonRegion 0 131.93 214.49 588.70 201.51 75.81 60.34 93.24 163.22 45.23 210.76 463.53 35.67 24.79 171.54 284.32 583.10 440.75 650.94 273.49 134.45 112.28 56.85 112.15 32 ER4b ExonRegion 0 36.62 45.26 234.07 87.32 16.80 6.91 26.76 63.03 13.96 79.86 143.57 45.71 59.23 88.87 171.92 172.38 114.46 166.25 77.86 46.66 36.59 15.84 27.04 33 E4_Da NovelBoundary 0 0.00 6.25 11.89 5.26 0.00 10.85 13.12 4.39 1.10 14.59 48.64 12.30 32.14 32.90 24.85 70.32 44.60 8.21 9.04 11.63 10.81 3.12 4.18 34 E4a_E5a KnownJunction 0 20.60 44.20 152.77 68.39 12.31 2.61 18.90 34.13 10.79 72.53 145.98 25.36 46.26 116.61 161.57 101.08 119.78 62.30 68.52 82.84 52.82 0.00 12.04 35 I4 Intron 0 4.42 2.43 8.10 1.82 3.19 0.55 3.16 3.01 3.84 10.19 59.38 8.51 4.61 89.24 84.09 111.69 64.99 21.75 20.90 13.31 8.54 4.97 7.01 36 I4_AR1 ActiveIntronRegion 0 4.47 2.45 8.20 1.84 3.23 0.55 3.20 3.05 3.89 10.32 60.07 8.61 4.66 90.26 85.06 112.94 65.76 21.95 21.13 13.47 8.65 5.03 7.09 37 I4 Intron 0 7.53 2.88 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 19.17 14.79 2.74 35.12 47.02 29.47 16.37 0.00 6.77 9.04 6.24 1.48 6.24 38 I4_AR1 ActiveIntronRegion 0 7.74 2.96 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 19.66 15.21 2.81 36.01 48.29 30.32 16.83 0.00 6.96 9.27 6.42 1.52 6.42 39 E5_Aa NovelBoundary 0 45.19 8.29 51.24 18.15 0.00 0.00 27.73 11.46 2.89 28.77 85.71 24.76 0.00 155.04 205.45 143.98 85.93 52.77 17.41 45.96 31.44 10.72 4.10 40 ER5a ExonRegion 0 14.30 23.91 40.45 13.19 3.73 7.53 12.51 11.36 2.80 16.46 50.70 7.10 3.56 42.02 61.27 66.65 51.18 33.98 43.79 19.30 14.52 6.54 11.11 41 IG8 Intergenic 0 3.05 3.87 12.38 9.01 3.42 0.90 8.57 6.10 4.91 8.18 7.73 11.03 1.41 2.54 10.37 6.22 11.58 11.77 8.14 12.79 2.10 0.91 2.48 42 IG8_SR1 SilentIntergenicRegion 0 3.08 3.91 12.48 9.09 3.45 0.91 8.65 6.16 4.95 8.25 7.80 11.13 1.42 2.56 10.45 6.28 11.68 11.87 8.21 12.90 2.12 0.91 2.50