Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ALDH16A1 Gene 0 55.60 14.87 54.22 25.96 20.55 13.56 10.59 28.64 33.89 29.94 112.22 11.26 12.76 139.27 147.16 115.36 84.97 77.26 36.79 38.19 26.75 33.90 28.71 2 433981 Transcript 0 3.83 0.36 15.11 5.74 5.10 2.45 2.55 1.81 3.53 2.85 6.72 0.15 0.11 11.14 21.14 16.13 13.24 15.02 0.27 2.84 2.91 2.58 8.22 3 293350 Transcript 0 17.57 14.36 37.59 15.00 4.34 15.98 6.21 17.49 31.53 19.20 76.50 6.53 8.38 105.82 97.30 110.50 52.69 80.90 17.77 24.85 23.41 30.06 31.16 4 455361 Transcript 0 3.56 0.00 0.00 0.00 3.40 0.00 0.00 0.00 1.53 0.00 9.90 0.00 0.00 12.13 9.39 14.70 0.00 4.35 4.61 0.00 0.00 0.00 0.00 5 IG9 Intergenic 0 6.24 3.08 1.38 1.23 3.84 3.33 1.10 1.75 2.23 1.68 10.66 5.39 1.81 12.15 9.36 8.08 6.24 1.94 4.57 4.66 4.00 2.20 5.99 6 IG9_AR1 ActiveIntergenicRegion 0 21.73 14.91 0.38 3.80 4.88 9.17 2.78 5.44 4.41 3.72 17.33 11.59 3.91 19.11 12.73 14.63 6.90 3.43 9.03 10.87 10.36 7.55 7.90 7 IG9_SR1 SilentIntergenicRegion 0 5.78 1.72 2.18 0.70 6.09 3.29 1.65 1.79 3.46 2.00 15.90 4.06 3.38 17.40 13.24 10.11 9.85 3.85 6.32 4.78 3.13 2.44 9.58 8 IG9_AR2 ActiveIntergenicRegion 0 6.08 2.60 0.77 1.38 2.42 3.87 0.00 1.39 2.95 1.51 6.26 10.82 0.00 11.96 7.86 6.36 9.81 0.13 2.17 2.42 3.92 1.01 1.55 9 ER1a ExonRegion 0 54.39 8.61 28.48 8.50 19.54 13.17 9.83 7.73 16.92 12.47 69.33 2.04 3.82 81.53 62.81 66.84 57.19 53.22 23.63 29.78 23.73 13.35 15.51 10 E1_Da NovelBoundary 0 9.85 2.76 3.61 0.00 0.00 5.79 1.85 1.93 5.30 6.31 11.21 0.00 0.00 0.00 5.19 7.95 16.27 25.99 0.00 5.88 3.15 2.57 0.00 11 E1a_E2a KnownJunction 1 3.33 9.67 36.34 5.36 6.96 0.00 0.00 14.70 22.34 26.08 123.40 5.55 0.00 72.52 58.84 36.74 151.57 38.18 8.56 57.85 54.12 7.78 3.59 12 ER2a ExonRegion 0 16.13 5.01 58.48 22.68 14.03 3.56 5.18 28.46 35.78 29.71 163.49 7.36 12.16 209.27 154.61 134.58 114.35 117.52 58.73 49.93 37.16 40.64 32.56 13 E2a_E3a KnownJunction 0 24.75 0.00 68.60 43.25 0.00 21.24 13.91 45.18 34.06 48.78 131.30 6.30 5.68 276.59 217.69 264.97 108.84 135.68 48.00 58.74 34.22 59.64 35.08 14 ER3a ExonRegion 0 14.82 7.40 61.67 23.13 26.19 22.86 16.96 27.91 34.33 32.92 143.81 10.12 9.45 132.10 158.50 110.41 99.88 75.58 33.66 36.42 35.35 43.54 15.79 15 E3a_E4a KnownJunction 0 43.79 24.67 63.69 28.33 30.65 7.78 10.16 41.32 41.15 35.73 168.15 25.81 0.00 177.12 206.56 121.16 113.79 127.47 36.90 36.50 53.68 27.43 23.73 16 ER4a ExonRegion 0 37.13 15.95 64.86 27.05 16.04 12.46 9.02 26.95 37.41 38.18 151.45 12.19 13.97 189.93 155.50 116.34 101.39 79.69 57.11 31.25 39.41 51.65 29.40 17 E4_Da NovelBoundary 0 27.86 0.00 0.00 0.00 3.90 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.27 12.39 0.00 8.50 0.00 0.00 0.00 3.12 8.19 18 E4a_E5a KnownJunction 0 43.93 6.25 68.51 22.91 30.65 0.00 9.49 28.01 44.82 45.37 136.67 5.70 0.00 154.22 154.15 157.22 113.88 139.78 47.15 28.12 39.11 54.50 24.67 19 ER5a ExonRegion 0 30.69 8.81 54.15 17.73 34.13 7.90 11.41 22.00 39.98 31.32 153.12 11.21 7.40 157.14 111.59 132.18 69.53 103.88 26.63 37.78 42.44 45.65 28.99 20 E5_Da NovelBoundary 0 13.04 0.00 22.09 11.39 0.00 2.84 2.03 3.37 6.28 2.28 7.16 0.00 0.00 21.43 4.45 10.85 4.77 10.07 13.18 6.01 0.00 11.57 7.43 21 E5a_E6a KnownJunction 0 24.97 14.80 30.93 10.69 12.05 10.39 4.15 30.27 30.53 29.01 93.23 13.20 18.34 112.66 100.13 82.54 80.97 52.40 40.57 49.54 28.23 38.09 28.34 22 E6_Aa NovelBoundary 0 0.00 0.00 13.84 14.38 0.00 2.78 0.00 8.30 3.33 6.50 17.48 0.00 0.00 14.19 28.18 32.30 17.02 6.43 0.00 3.26 0.00 8.08 16.73 23 ER6a ExonRegion 0 24.05 8.51 40.72 13.93 10.88 11.51 5.59 18.18 25.41 21.94 98.14 5.61 8.63 147.43 108.99 112.43 67.54 65.28 30.23 26.56 39.95 28.53 34.79 24 E6_Da KnownBoundary 0 6.45 5.66 10.26 9.72 3.48 2.21 0.00 7.23 4.25 2.61 0.00 0.00 0.00 9.65 24.60 15.38 9.54 10.07 0.00 12.02 0.00 9.06 19.38 25 E6a_E6b KnownJunction 0 3.48 10.00 40.63 9.29 7.13 29.70 13.12 16.59 25.32 27.32 77.02 19.21 6.82 106.89 76.52 122.45 51.05 65.37 13.84 29.21 14.09 26.02 34.83 26 E6a_E7a KnownJunction 0 3.56 0.00 0.00 0.00 3.40 0.00 0.00 0.00 1.53 0.00 9.90 0.00 0.00 12.13 9.39 14.70 0.00 4.35 4.61 0.00 0.00 0.00 0.00 27 ER6b ExonRegion 0 3.83 0.36 15.11 5.74 5.10 2.45 2.55 1.81 3.53 2.85 6.72 0.15 0.11 11.14 21.14 16.13 13.24 15.02 0.27 2.84 2.91 2.58 8.22 28 E6_Ab KnownBoundary 0 10.00 0.00 17.09 3.73 3.90 2.50 4.46 2.42 0.00 1.61 11.79 0.00 0.00 14.19 15.95 23.41 17.39 9.20 0.00 2.43 0.00 5.45 18.69 29 ER6c ExonRegion 0 18.65 12.59 36.95 11.03 9.84 11.00 9.80 14.47 23.69 21.72 83.87 7.22 8.77 124.07 138.29 85.45 88.73 53.50 15.32 24.82 25.71 21.98 25.00 30 E6_Db KnownBoundary 0 19.04 18.09 46.10 20.28 0.00 12.27 5.52 18.81 16.70 21.22 65.65 0.00 6.82 60.27 109.65 62.55 72.00 50.08 11.86 17.19 16.68 34.72 22.45 31 ER6d ExonRegion 0 15.16 11.96 25.88 10.46 2.48 8.20 1.42 11.57 22.45 12.80 66.77 0.38 4.69 85.77 107.22 63.38 48.11 54.18 14.80 21.75 27.06 27.48 26.73 32 E6c_E7a KnownJunction 0 34.08 21.11 46.27 25.24 3.40 10.05 4.11 24.32 46.82 17.49 85.71 0.00 13.64 124.79 108.17 145.69 58.91 123.16 24.66 23.59 29.10 36.68 31.93 33 ER7a ExonRegion 0 38.52 15.73 55.59 29.75 15.22 16.25 7.45 24.23 36.19 33.78 122.86 10.82 16.52 172.24 171.64 131.78 92.80 98.05 44.77 41.76 30.52 51.43 40.96 34 E7a_E8a KnownJunction 0 61.12 27.36 102.48 64.79 22.24 21.92 21.73 48.51 66.00 50.02 147.93 17.11 19.64 185.77 223.01 133.13 126.04 199.60 78.97 75.81 38.43 52.17 84.51 35 ER8a ExonRegion 0 66.25 24.23 79.61 47.03 13.74 28.39 17.49 38.71 43.19 49.95 215.18 12.54 18.42 178.31 182.54 200.43 133.86 180.85 68.58 64.10 29.98 62.40 49.59 36 E8a_E9a KnownJunction 0 70.38 18.22 90.56 47.48 7.47 4.94 16.34 37.09 33.59 45.67 137.03 12.60 12.66 164.87 211.51 116.98 99.39 155.45 30.02 56.76 23.48 43.41 20.40 37 ER9a ExonRegion 0 52.53 20.94 72.57 30.62 12.36 7.76 8.98 36.45 35.13 40.79 113.83 3.73 9.07 177.76 169.84 137.33 94.11 103.42 33.60 51.73 30.98 45.75 34.62 38 E9a_E10a KnownJunction 0 39.41 15.98 83.70 54.54 12.99 26.86 8.08 56.27 45.86 45.58 161.94 5.25 6.82 125.79 131.03 169.96 82.19 101.31 35.39 46.72 15.75 50.76 51.64 39 ER10a ExonRegion 0 41.65 24.38 81.97 30.32 21.20 15.78 8.69 54.41 38.57 40.53 133.94 4.86 11.86 158.31 151.85 143.11 82.43 80.36 34.50 54.34 30.69 37.66 40.39 40 E10a_E11a KnownJunction 0 60.08 12.89 60.76 27.07 15.79 10.33 12.67 59.68 37.67 39.92 162.36 6.30 0.00 188.65 140.68 181.32 92.10 82.33 35.95 45.06 19.40 26.64 39.86 41 ER11a ExonRegion 0 81.40 32.32 75.51 23.87 18.49 17.83 22.29 40.69 46.61 38.83 132.65 12.33 6.77 181.72 158.79 160.13 89.63 64.93 36.55 40.75 30.16 45.63 43.56 42 E11a_E12a KnownJunction 0 83.57 20.98 53.40 18.35 23.26 17.09 24.16 37.79 25.81 26.24 86.81 12.60 5.84 179.18 139.56 128.94 66.39 56.58 55.63 33.94 11.12 44.39 47.04 43 ER12a ExonRegion 0 87.34 22.59 73.74 18.97 23.13 12.02 11.17 28.88 34.72 41.30 116.68 11.67 10.97 151.13 133.73 119.88 80.83 66.24 25.52 32.56 19.11 27.77 27.46 44 E12a_E13a KnownJunction 0 47.79 19.67 67.71 39.39 7.98 12.44 7.42 28.83 37.33 41.07 101.82 12.45 0.00 103.18 117.19 79.81 61.34 89.66 13.37 23.91 16.74 18.98 15.96 45 ER13a ExonRegion 0 63.43 17.36 64.57 25.02 16.33 17.85 13.74 26.44 29.75 31.32 125.78 7.87 9.96 137.83 169.90 115.37 81.13 89.53 26.67 31.40 20.77 23.59 22.75 46 E13a_E14a KnownJunction 0 88.61 14.93 60.17 60.27 15.96 17.66 14.26 51.63 23.06 41.29 122.56 11.10 0.00 166.28 188.15 103.99 81.53 105.13 17.88 55.80 17.11 19.78 46.10 47 E14_Aa NovelBoundary 0 35.64 0.00 21.85 16.88 7.30 7.33 7.20 24.73 9.00 13.57 38.59 5.85 0.00 40.38 38.57 33.50 32.82 33.45 20.05 35.28 9.45 15.80 16.65 48 ER14a ExonRegion 0 93.30 20.03 90.73 57.42 15.82 12.44 10.69 47.96 46.07 43.02 138.43 18.25 16.77 175.90 237.92 132.37 106.09 103.72 40.48 60.99 34.37 34.41 42.60 49 E14a_E15a KnownJunction 0 143.66 27.69 112.41 53.47 24.36 22.60 12.28 78.90 60.13 33.85 162.73 6.30 35.55 162.58 222.02 129.03 116.78 120.38 36.90 60.91 32.87 31.11 42.34 50 ER15a ExonRegion 0 96.03 22.60 95.71 48.23 40.14 21.25 17.15 51.36 66.31 43.04 156.64 17.63 18.87 194.82 263.33 149.74 106.59 159.19 49.13 76.98 45.44 38.45 45.48 51 E15_Da NovelBoundary 0 23.04 3.35 6.62 16.85 12.82 2.90 10.33 8.91 7.06 3.01 7.69 0.00 0.00 7.65 8.90 16.06 8.60 9.87 9.13 0.00 0.00 4.78 4.01 52 E15a_E16a KnownJunction 0 103.72 6.31 91.48 46.91 27.76 10.96 20.01 58.86 52.05 30.49 145.09 12.60 6.82 204.02 233.88 121.51 84.81 95.51 83.48 81.17 39.41 25.66 45.24 53 I15 Intron 0 18.50 3.66 3.76 8.70 5.05 2.99 2.95 6.18 5.05 1.76 4.97 2.12 4.63 5.67 8.91 20.13 7.07 10.94 4.91 3.83 2.08 3.21 4.03 54 I15_AR1 ActiveIntronRegion 0 9.03 3.12 3.11 8.66 3.66 4.69 2.71 3.95 5.96 1.46 4.29 1.95 5.93 6.39 10.03 26.36 7.88 12.06 3.80 3.27 2.63 2.13 5.01 55 I15_AR3 ActiveIntronRegion 0 28.26 4.23 4.43 8.81 6.50 1.27 3.22 8.49 4.15 2.08 5.70 2.30 3.35 4.97 7.82 13.92 6.30 9.87 6.08 4.43 1.53 4.34 3.06 56 E16_Aa NovelBoundary 0 23.78 3.03 7.86 9.62 4.33 2.90 6.09 9.53 3.85 4.41 2.00 7.50 0.00 0.00 28.68 10.08 0.00 14.51 13.65 3.07 0.00 11.21 0.00 57 ER16a ExonRegion 0 72.39 11.36 31.21 26.17 29.91 12.44 10.12 28.95 32.08 22.67 78.98 18.53 19.16 100.52 134.82 103.05 81.73 47.27 41.48 32.26 14.57 28.73 19.76