Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CYTH2 Gene 0 33.05 80.69 101.65 51.58 38.06 50.16 31.68 74.80 84.83 95.48 44.53 10.45 15.14 46.35 48.88 32.61 30.62 106.82 81.15 84.35 57.71 68.31 55.24 2 452733 Transcript 0 19.48 3.58 28.94 3.88 8.28 0.07 6.36 7.31 5.57 7.83 25.48 3.08 13.80 42.15 41.21 17.17 27.82 3.09 12.09 0.42 68.79 48.65 75.97 3 427476 Transcript 0 60.94 180.82 243.16 100.08 42.30 107.61 57.20 163.71 201.63 235.72 69.15 24.31 17.60 54.00 50.04 30.82 48.50 226.06 129.90 166.90 72.56 59.69 51.49 4 460595 Transcript 0 0.00 0.00 0.00 1.33 0.00 0.00 2.25 0.00 0.00 2.82 4.47 0.00 0.00 0.00 0.00 3.76 0.00 0.00 4.05 3.26 2.53 8.45 0.00 5 391881 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 493260 Transcript 0 18.62 10.39 34.83 26.75 11.42 9.27 14.39 26.93 26.62 26.04 10.45 6.54 8.66 15.76 20.12 29.16 15.03 47.05 16.53 16.91 22.71 25.58 27.27 7 462117 Transcript 0 0.00 0.00 1.42 2.03 4.33 0.00 4.02 1.60 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 0.00 0.00 0.00 0.00 0.00 8 415186 Transcript 0 2.26 0.84 2.92 0.94 0.00 0.00 0.90 0.92 1.53 0.14 1.49 0.00 0.00 0.41 0.66 0.00 2.29 0.00 0.00 1.45 1.67 3.03 3.92 9 474049 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 325139 Transcript 0 0.13 0.51 0.11 0.38 0.00 0.23 0.16 2.50 3.50 2.42 0.48 0.22 0.00 0.07 0.18 0.00 0.21 1.78 3.10 0.13 0.69 0.26 0.37 11 474209 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 467412 Transcript 0 10.04 4.17 13.50 5.91 5.16 4.89 5.66 6.12 9.18 5.09 6.44 3.30 5.15 2.98 9.39 2.60 3.55 14.21 6.89 3.78 12.20 10.38 14.94 13 ER1a ExonRegion 0 0.00 1.17 0.02 0.00 0.00 0.13 0.00 1.32 0.53 0.49 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 14 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.44 0.00 3.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 0.00 0.00 15 ER1b ExonRegion 0 3.74 18.24 6.49 3.91 5.24 13.75 3.05 1.32 7.98 6.59 4.46 0.00 1.58 2.90 3.20 19.74 1.72 8.88 14.76 6.58 6.21 6.55 6.68 16 E1_Ac KnownBoundary 1 9.41 20.79 16.53 8.19 3.74 20.73 3.93 6.94 15.62 20.50 4.84 0.00 6.66 0.00 0.00 39.99 0.00 38.10 55.15 6.14 11.61 11.14 15.37 17 E1_Ad KnownBoundary 0 0.00 0.00 1.83 2.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 18 ER1c ExonRegion 1 4.37 10.44 12.25 7.90 2.14 13.33 2.38 1.73 14.66 16.21 3.35 0.00 2.81 0.22 0.39 27.34 0.00 14.91 32.07 3.97 3.53 9.03 6.26 19 E1_Ae KnownBoundary 0 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 1.79 1.61 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.06 5.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 21 ER1d ExonRegion 0 13.76 12.44 23.28 8.39 9.37 19.75 9.42 12.56 22.56 28.67 14.87 1.83 0.72 10.74 12.50 10.06 8.38 2.42 12.01 16.04 12.63 10.58 10.05 22 E1_Ag KnownBoundary 1 231.52 177.53 77.91 34.53 177.59 385.29 190.92 84.12 73.70 105.38 181.10 6.30 6.82 136.44 57.85 89.29 165.78 152.13 193.89 114.48 189.84 102.14 141.87 23 ER1e ExonRegion 0 92.60 79.82 49.63 10.90 68.90 147.62 76.46 47.10 43.54 62.22 91.33 8.66 4.69 68.21 46.42 43.10 67.67 13.40 77.25 58.51 79.88 54.17 67.54 24 ER1f ExonRegion 0 115.65 102.11 55.05 19.47 88.11 206.17 111.87 54.32 49.40 74.38 107.28 8.66 10.39 100.58 61.76 56.47 111.76 14.78 114.67 81.46 133.17 68.61 79.71 25 ER1g ExonRegion 0 33.73 66.01 63.72 18.49 24.50 76.77 41.40 44.79 55.58 87.26 71.83 7.88 11.62 61.46 60.62 25.62 59.58 26.12 57.36 64.40 103.93 57.30 50.58 26 E1a_E3a KnownJunction 1 22.89 55.58 165.22 36.16 10.78 22.43 20.09 125.73 146.47 188.06 209.21 6.30 28.24 192.54 131.65 43.49 170.27 161.83 155.68 147.14 304.75 108.57 95.95 27 ER2a ExonRegion 0 0.26 1.01 0.23 0.76 0.00 0.46 0.33 0.40 1.21 1.94 0.96 0.44 0.00 0.14 0.36 0.00 0.41 1.15 2.73 0.26 1.37 0.52 0.73 28 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 5.79 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 3.48 0.00 0.00 0.00 0.00 29 ER3a ExonRegion 0 20.94 87.79 206.47 80.46 47.44 121.09 44.67 128.48 219.95 208.09 158.68 25.07 28.43 196.98 184.86 120.59 110.98 294.19 225.39 209.04 201.54 219.61 204.95 30 E3a_E4a KnownJunction 0 35.34 169.25 201.21 120.96 153.57 455.42 222.67 170.99 278.53 234.16 199.84 25.21 47.56 196.60 186.41 83.57 142.31 335.36 164.33 245.12 226.78 227.91 141.36 31 E3a_E5a KnownJunction 0 0.00 0.00 1.42 2.03 4.33 0.00 4.02 1.60 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 0.00 0.00 0.00 0.00 0.00 32 ER4a ExonRegion 0 56.55 243.39 312.65 145.54 117.17 366.54 207.55 222.30 352.43 318.72 253.09 42.00 62.86 273.68 193.26 163.29 190.12 377.82 322.91 238.93 292.34 302.17 195.75 33 E4a_E5a KnownJunction 0 100.46 403.02 506.28 227.64 86.25 356.39 297.79 301.15 481.97 422.22 329.45 96.03 111.52 301.67 272.08 170.13 238.05 469.17 561.71 284.94 277.26 364.22 256.17 34 ER5a ExonRegion 0 132.84 315.41 375.34 166.68 79.13 158.54 100.08 266.15 396.44 366.89 279.20 72.11 76.34 301.90 274.74 179.83 223.27 428.15 345.95 301.77 338.15 337.51 235.89 35 E5_Da KnownBoundary 0 0.00 0.00 6.42 0.00 0.00 0.00 0.00 0.00 0.00 1.10 2.68 0.00 0.00 7.24 4.45 0.00 0.00 2.11 0.00 3.26 14.52 5.69 7.77 36 E5a_E6b KnownJunction 0 197.66 324.28 390.85 183.63 73.51 110.85 49.90 313.81 415.45 395.14 323.13 55.82 82.46 321.68 306.94 165.77 256.29 542.67 366.69 300.79 367.51 443.15 263.86 37 ER5b ExonRegion 0 1.43 0.08 2.97 0.14 0.00 0.83 0.81 0.43 1.56 0.77 0.99 0.00 0.00 4.32 3.30 0.04 1.36 1.32 2.03 0.80 5.37 1.95 2.72 38 E5_Db KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 2.61 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 4.27 4.58 0.00 0.00 0.00 3.15 0.00 0.00 39 E5_Dc KnownBoundary 0 3.70 3.35 4.91 1.83 0.00 0.00 0.00 2.55 3.39 0.00 5.00 0.00 0.00 2.47 4.45 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 40 ER5c ExonRegion 0 2.49 2.03 4.90 1.36 0.00 1.62 0.16 1.73 2.69 1.15 3.52 0.00 0.00 1.62 2.90 0.00 3.30 0.00 0.00 0.00 2.20 4.17 0.35 41 ER5d ExonRegion 0 2.26 0.84 2.92 0.94 0.00 0.00 0.90 0.92 1.53 0.14 1.49 0.00 0.00 0.41 0.66 0.00 2.29 0.00 0.00 1.45 1.67 3.03 3.92 42 E6_Aa NovelBoundary 0 0.00 0.00 17.21 14.65 0.00 0.00 8.44 6.45 6.54 6.66 9.32 0.00 0.00 2.47 4.45 8.54 0.00 8.33 0.00 5.88 2.84 5.94 21.00 43 ER6a ExonRegion 0 4.93 1.60 12.16 8.25 3.16 2.61 3.93 5.16 6.60 7.37 2.68 0.71 0.51 2.37 3.59 2.19 1.58 9.21 7.45 5.36 5.25 7.64 13.07 44 E6_Ab KnownBoundary 0 10.30 12.50 7.13 6.69 7.64 0.00 10.33 4.93 1.27 4.24 6.90 0.00 0.00 0.00 9.64 3.50 0.00 6.30 0.00 3.00 3.15 14.70 4.01 45 ER6b ExonRegion 0 145.03 315.31 461.41 241.13 95.69 193.26 95.18 347.59 457.22 404.77 308.08 51.41 125.28 312.79 283.56 221.46 239.93 566.45 497.00 305.69 365.26 480.28 320.94 46 E6_Da KnownBoundary 0 7.04 9.41 2.93 1.47 0.00 0.00 1.81 0.00 1.79 2.23 0.00 0.00 0.00 0.00 4.45 3.33 0.00 6.88 3.76 2.88 6.24 3.06 6.83 47 E6a_E6c KnownJunction 0 0.00 0.00 0.00 1.33 0.00 0.00 2.25 0.00 0.00 2.82 4.47 0.00 0.00 0.00 0.00 3.76 0.00 0.00 4.05 3.26 2.53 8.45 0.00 48 E6a_E6d KnownJunction 0 209.67 242.13 537.44 230.24 145.84 283.30 106.17 350.98 426.36 426.57 292.50 59.12 203.23 344.28 296.19 232.67 223.09 497.11 526.60 328.98 326.12 400.83 327.54 49 ER6c ExonRegion 0 10.04 4.17 13.50 5.91 5.16 4.89 5.66 6.12 9.18 5.09 6.44 3.30 5.15 2.98 9.39 2.60 3.55 14.21 6.89 3.78 12.20 10.38 14.94 50 E6_Ac KnownBoundary 0 14.22 3.35 18.39 3.66 0.00 0.00 6.98 6.61 5.84 12.54 3.90 0.00 13.64 0.00 6.18 4.02 4.02 7.13 9.22 3.07 16.00 0.00 7.68 51 ER6d ExonRegion 0 11.70 4.21 13.77 5.35 2.12 3.87 3.99 9.20 9.29 10.74 8.52 4.45 5.18 6.11 9.94 7.24 4.62 18.71 13.46 5.92 19.99 10.60 10.75 52 E6_Ad KnownBoundary 0 10.96 0.00 15.17 7.82 3.40 5.79 4.02 6.16 7.75 2.20 5.26 0.00 0.00 2.35 14.34 7.95 0.00 24.17 12.24 5.82 11.18 13.72 7.09 53 ER6e ExonRegion 0 139.47 277.47 492.03 214.42 152.21 239.66 105.53 325.51 460.58 442.32 262.71 64.90 100.47 300.43 282.59 194.90 206.59 464.09 338.32 329.38 348.29 346.83 262.26 54 E6_Db NovelBoundary 0 36.90 134.12 277.02 146.10 48.90 87.00 74.24 155.05 210.85 234.77 67.28 5.40 22.73 95.12 111.26 55.28 85.37 152.84 128.38 136.91 91.92 166.86 126.76 55 E6c_E7a KnownJunction 0 124.61 385.19 712.07 344.58 166.13 350.03 184.87 382.73 479.05 465.28 222.58 48.02 123.86 304.26 305.09 259.93 239.64 633.03 467.03 357.30 268.79 517.55 340.26 56 ER6f ExonRegion 0 94.19 333.00 611.31 300.69 140.81 291.12 149.94 333.81 466.56 468.94 232.43 45.46 97.32 318.73 327.48 213.99 212.91 510.90 425.25 325.00 271.33 473.48 309.08 57 ER7a ExonRegion 0 100.06 280.22 536.05 224.31 162.14 236.03 126.04 272.60 427.10 399.06 249.32 68.90 117.50 319.99 309.79 180.54 206.31 438.49 383.67 302.74 333.39 351.25 265.39 58 E7_Da KnownBoundary 0 141.65 264.89 488.13 178.93 157.22 211.64 136.42 240.69 371.09 352.19 201.37 99.33 143.82 271.00 337.85 195.42 182.33 434.43 278.69 293.38 349.78 215.42 220.41 59 ER7b ExonRegion 0 107.56 282.63 508.17 189.19 118.22 232.89 108.28 258.77 382.37 381.31 187.28 81.24 87.15 271.58 285.80 189.62 162.52 481.19 383.92 288.86 289.05 315.29 272.68 60 E7b_E8a KnownJunction 0 147.14 476.56 659.79 277.92 231.75 371.83 162.56 351.72 469.84 461.62 246.75 54.17 113.47 314.26 361.58 205.50 212.53 625.61 657.15 391.75 311.85 394.22 283.32 61 ER8a ExonRegion 0 114.71 394.35 501.34 204.42 154.24 222.74 104.85 279.56 400.64 388.70 259.13 97.49 125.12 341.46 333.72 198.73 226.61 491.83 444.64 313.77 333.59 368.04 294.45 62 E8_Da KnownBoundary 0 2.89 10.06 1.83 1.73 0.00 0.00 1.81 6.45 4.46 5.88 4.42 0.00 0.00 6.65 18.05 7.26 3.93 16.71 13.84 0.00 21.25 0.00 11.78 63 E8a_E8b KnownJunction 0 82.46 241.86 376.51 135.41 27.76 157.86 75.03 227.71 316.32 347.22 104.55 44.71 29.38 88.18 82.45 53.40 89.20 321.72 167.06 205.94 109.59 67.85 55.66 64 E8a_E8c KnownJunction 0 38.97 5.99 57.86 7.76 16.55 0.00 12.72 13.31 10.62 15.18 50.96 6.15 27.60 84.29 81.83 34.35 55.63 6.18 24.19 0.00 137.58 97.30 151.95 65 E8_Db KnownBoundary 0 0.00 6.05 16.65 2.06 6.62 0.00 1.72 4.72 4.83 5.16 0.00 0.00 0.00 4.94 4.45 0.00 0.00 5.14 0.00 5.50 3.03 18.00 8.71 66 E8b_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER8b ExonRegion 0 5.82 13.73 17.77 2.73 5.35 1.38 4.96 7.78 9.88 10.04 5.80 0.00 7.04 17.87 26.84 11.89 10.73 26.33 14.33 8.51 15.98 19.27 21.29 68 ER8c ExonRegion 0 8.56 2.36 3.79 1.92 2.17 2.05 2.55 3.11 3.39 3.24 1.76 0.69 0.21 4.01 4.25 4.21 2.74 7.21 4.48 4.01 4.24 4.70 4.72 69 E8_Dc KnownBoundary 0 101.05 97.09 92.87 99.79 78.35 55.42 129.13 98.82 62.62 83.49 49.91 35.71 31.82 18.13 57.11 107.07 90.70 121.54 105.23 64.62 71.04 25.41 63.85 70 ER8d ExonRegion 0 18.62 10.39 34.83 26.75 11.42 9.27 14.39 26.93 26.62 26.04 10.45 6.54 8.66 15.76 20.12 29.16 15.03 47.05 16.53 16.91 22.71 25.58 27.27 71 E8_Ab KnownBoundary 0 3.19 0.00 6.18 3.80 0.00 0.00 0.00 3.94 2.63 1.58 0.00 5.70 0.00 2.35 0.00 0.00 4.02 2.57 12.80 0.00 5.93 9.37 4.35 72 E8_Ac KnownBoundary 0 15.04 0.00 8.81 1.80 0.00 0.00 0.00 15.48 2.49 1.67 2.37 0.00 0.00 2.47 16.07 8.03 13.84 11.32 3.86 2.94 6.18 8.76 7.60 73 ER8e ExonRegion 0 84.66 217.59 377.82 131.75 26.76 133.87 78.56 228.73 325.25 343.69 117.91 37.52 26.58 162.41 183.75 75.29 135.34 282.71 213.42 204.96 172.62 127.09 128.23 74 ER8f ExonRegion 0 125.60 363.13 413.26 162.97 97.21 249.78 110.86 286.76 373.87 385.07 161.68 47.97 84.11 204.19 274.47 122.99 166.70 261.87 256.30 274.94 248.67 250.21 183.12 75 E8d_E9a KnownJunction 0 173.44 438.41 428.58 158.99 205.77 322.20 161.19 321.49 348.61 393.66 150.04 53.57 145.12 245.10 318.19 173.03 149.98 401.97 356.06 278.36 253.90 294.35 202.91 76 E9_Aa NovelBoundary 0 14.37 0.00 4.76 1.50 4.33 2.38 1.99 8.34 3.15 5.83 0.00 0.00 0.00 11.83 15.20 11.19 7.39 4.39 4.14 2.43 25.33 9.92 12.04 77 ER9a ExonRegion 0 160.21 378.19 486.88 217.76 188.08 252.33 140.25 322.26 425.91 415.55 226.31 72.88 120.25 293.02 358.02 195.33 167.38 479.13 415.03 309.19 304.30 349.66 274.70 78 E9a_E10a KnownJunction 0 289.68 473.34 597.50 302.63 311.55 306.24 164.46 384.86 490.39 468.04 307.76 58.22 204.53 392.90 618.21 283.86 212.34 570.81 701.76 386.70 400.69 511.67 441.75 79 ER10a ExonRegion 0 84.17 253.37 521.72 223.87 125.02 176.93 112.93 315.99 388.65 410.57 203.52 47.79 77.61 241.28 337.28 184.64 153.93 438.31 332.76 337.49 293.34 344.71 245.07 80 E10a_E11a KnownJunction 0 138.54 331.06 502.23 258.94 188.12 254.12 130.41 389.55 428.61 392.53 177.31 66.02 26.30 189.83 327.83 164.66 113.42 385.60 390.88 399.55 281.03 382.53 195.74 81 ER11a ExonRegion 0 107.33 309.47 342.94 154.51 141.50 167.46 103.12 239.17 266.44 275.66 143.66 29.11 44.80 145.10 188.12 111.12 96.85 254.39 250.46 233.74 168.04 274.57 148.68 82 E11_Da KnownBoundary 0 172.85 196.02 99.17 59.13 145.16 109.94 98.48 145.24 112.18 125.20 50.54 66.02 31.82 100.36 54.14 58.36 54.70 113.91 133.75 118.31 74.75 163.86 125.14 83 E11_Db KnownBoundary 0 21.71 108.14 54.61 47.75 52.72 50.82 73.53 76.81 88.16 144.73 28.53 7.35 13.15 24.55 30.66 12.48 9.26 107.78 120.38 131.99 27.86 60.74 40.38 84 ER11b ExonRegion 0 73.21 135.05 109.71 72.31 110.18 86.84 92.60 142.34 139.50 189.64 49.46 22.41 17.10 68.60 46.76 36.19 20.58 148.47 150.65 154.57 66.76 114.84 86.89 85 ER11c ExonRegion 0 39.41 119.78 109.81 64.75 56.84 57.36 39.37 99.70 86.94 124.21 33.75 3.90 5.82 19.82 17.63 8.23 7.79 130.39 92.73 127.86 35.53 51.54 47.32