Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC9 Gene 0 30.99 9.44 40.82 25.74 16.17 15.47 9.46 39.30 32.87 44.42 46.82 9.84 10.30 50.24 60.77 36.10 45.02 36.56 31.30 18.45 70.49 50.78 57.71 2 221922 Transcript 0 37.96 9.06 50.81 33.76 21.64 19.04 11.95 40.84 38.20 56.38 51.93 11.53 11.13 54.63 61.50 45.07 52.64 49.12 38.09 21.64 83.46 56.43 71.73 3 IG21_AR1 ActiveIntergenicRegion 0 1.52 0.37 4.26 14.95 0.48 0.00 0.48 2.31 7.27 4.60 7.63 35.35 158.59 6.09 12.20 16.55 19.55 7.09 14.87 25.60 10.68 0.75 10.55 4 ER1a ExonRegion 0 26.85 5.83 9.32 6.50 22.21 17.00 7.42 8.73 10.10 14.75 19.14 0.00 0.00 18.15 35.63 24.72 24.42 11.33 25.83 13.27 27.77 27.62 33.38 5 E1a_E2a KnownJunction 0 59.86 9.67 33.91 27.67 35.99 19.53 7.55 40.75 31.11 52.43 28.74 0.00 6.01 26.43 31.15 27.94 66.01 53.68 26.17 23.01 49.73 24.55 97.31 6 I1_AR1 ActiveIntronRegion 0 3.81 1.11 8.02 2.75 4.47 0.81 0.90 4.15 2.63 1.08 4.32 3.39 2.16 3.50 9.36 7.26 4.88 5.24 3.88 1.24 14.20 7.16 18.56 7 I1_SR2 SilentIntronRegion 0 4.51 1.19 5.16 3.02 3.44 2.50 3.92 10.13 4.06 4.31 5.04 3.31 1.45 4.51 7.69 4.07 6.50 6.97 5.66 3.56 12.80 6.67 13.71 8 ER2a ExonRegion 0 13.87 3.30 27.06 14.13 11.25 5.35 4.79 16.65 26.44 26.16 23.59 8.42 3.36 22.45 35.21 36.23 25.65 19.83 18.60 13.66 37.11 23.51 54.33 9 E2a_E3a KnownJunction 0 14.45 0.00 35.01 17.95 3.82 13.63 1.81 18.15 18.63 15.04 35.11 5.70 6.49 5.12 5.07 14.78 23.28 10.61 22.21 17.00 85.93 13.04 23.05 10 ER3a ExonRegion 0 10.28 1.88 41.98 30.19 13.96 5.75 4.25 40.40 36.67 56.74 86.04 9.07 8.62 56.41 78.61 55.11 89.56 47.71 65.04 35.58 115.77 68.68 93.02 11 E3_Da NovelBoundary 0 0.00 0.00 22.94 3.70 4.33 0.00 0.00 13.92 7.20 7.87 2.68 0.00 0.00 2.18 9.64 4.36 4.77 10.53 12.89 2.94 2.47 5.45 12.46 12 E3a_E4a KnownJunction 1 10.96 0.00 29.89 42.09 15.96 14.37 12.10 58.00 26.07 55.31 40.22 25.21 0.00 46.32 99.64 77.59 28.80 79.84 83.11 23.33 68.26 48.62 201.80 13 ER4a ExonRegion 0 25.34 5.98 27.13 24.10 35.65 32.92 14.50 40.26 31.81 55.21 45.14 12.90 7.82 45.46 50.29 38.73 47.70 59.82 42.50 34.06 88.77 43.86 82.63 14 E4_Da NovelBoundary 0 0.00 0.00 5.03 1.86 0.00 0.00 0.00 16.63 1.68 3.20 0.00 0.00 0.00 0.00 4.45 0.00 4.49 0.00 0.00 0.00 2.41 0.00 0.00 15 E4a_E5a KnownJunction 1 12.97 6.12 20.52 14.58 25.81 33.05 21.37 28.96 42.79 67.32 57.59 18.46 6.82 26.61 25.84 18.37 57.97 29.35 30.68 32.98 72.71 53.15 27.57 16 ER5a ExonRegion 0 35.67 8.96 26.00 15.76 10.49 16.75 9.13 24.58 25.55 47.93 45.53 11.15 3.59 50.50 59.60 30.05 46.50 41.21 22.99 27.12 88.20 46.09 46.28 17 E5_Da NovelBoundary 0 6.96 0.00 6.36 2.06 0.00 0.00 3.97 2.42 11.11 6.96 0.00 6.30 0.00 2.47 8.90 3.85 0.00 0.00 8.56 3.26 14.58 8.88 31.16 18 E5a_E6a KnownJunction 0 61.71 8.88 45.50 18.45 26.06 44.12 22.74 39.43 39.87 62.67 45.54 12.45 6.01 76.23 77.76 52.64 51.43 65.70 39.62 24.10 71.35 48.07 64.19 19 I5_AR1 ActiveIntronRegion 0 2.59 0.87 3.10 1.39 2.87 2.75 1.70 9.58 2.70 1.53 2.51 0.64 4.32 1.32 5.62 3.63 3.16 2.45 6.00 2.27 4.24 5.46 12.65 20 E6_Aa NovelBoundary 0 0.00 2.43 11.74 1.63 0.00 0.00 3.93 9.69 2.84 3.81 2.37 0.00 0.00 2.06 4.45 17.09 4.02 2.57 0.00 5.69 2.72 5.82 15.88 21 ER6a ExonRegion 0 37.95 6.61 42.83 17.59 29.21 21.44 13.84 31.32 36.10 51.42 45.38 10.26 9.05 67.75 73.39 57.53 56.19 40.50 25.67 20.57 85.47 40.88 46.53 22 E6a_E7a KnownJunction 0 16.67 13.42 46.54 31.76 37.78 26.97 5.79 22.92 38.86 62.32 37.38 11.55 26.62 43.79 37.09 59.13 54.98 43.36 28.14 17.00 95.14 34.23 34.74 23 ER7a ExonRegion 0 16.34 6.51 24.32 18.47 6.50 9.81 3.29 22.50 28.98 36.07 31.73 7.41 9.46 47.74 50.27 27.89 38.87 26.28 16.40 13.70 52.76 30.64 40.76 24 E7a_E8a KnownJunction 0 10.30 5.85 47.60 32.36 0.00 0.00 1.94 16.84 44.01 61.97 49.01 5.70 0.00 50.21 48.09 31.70 58.44 36.77 21.93 15.53 36.20 54.38 38.58 25 I7_SR1 SilentIntronRegion 0 10.36 2.21 1.66 2.58 6.80 1.66 2.16 7.01 3.34 4.96 2.46 1.99 1.40 4.59 6.04 3.24 5.39 4.83 5.20 2.70 10.80 9.08 12.26 26 E8_Aa NovelBoundary 0 9.93 0.00 11.92 0.00 0.00 0.00 0.00 17.17 9.32 9.27 0.00 0.00 0.00 2.88 0.00 0.00 4.77 13.93 14.02 9.08 11.68 0.00 19.55 27 ER8a ExonRegion 0 29.68 11.34 50.17 33.02 9.14 14.86 13.00 28.35 39.17 45.90 45.17 5.71 6.73 51.78 71.97 36.38 55.92 29.50 24.61 15.02 61.38 48.06 57.62 28 E8a_E9a KnownJunction 0 68.75 11.25 81.66 56.14 20.63 19.25 10.38 31.87 37.18 58.88 54.28 24.61 13.15 79.05 65.02 70.15 61.15 52.73 25.98 21.28 94.09 99.26 110.97 29 I8 Intron 0 8.58 3.97 8.88 4.71 5.32 1.89 4.15 14.90 7.26 5.86 3.42 3.08 2.20 1.65 6.46 4.49 3.53 8.16 5.16 4.55 11.53 7.45 13.96 30 I8_SR1 SilentIntronRegion 0 8.60 3.98 8.90 4.73 5.34 1.90 4.16 14.94 7.27 5.87 3.43 3.08 2.20 1.65 6.48 4.50 3.54 8.18 5.18 4.56 11.55 7.46 13.99 31 E9_Aa NovelBoundary 0 31.19 12.89 16.41 3.80 3.14 0.00 2.03 17.17 5.99 12.25 7.69 0.00 0.00 7.18 23.98 7.09 4.77 10.99 4.42 10.99 11.74 10.90 3.93 32 ER9a ExonRegion 0 72.19 12.11 93.08 60.31 18.33 23.22 13.27 43.10 41.63 67.25 57.37 11.98 23.45 80.03 93.52 58.87 66.44 70.65 49.95 24.63 123.83 90.70 102.35 33 E9a_E10a KnownJunction 0 99.05 20.39 92.84 68.46 32.26 17.94 21.37 50.27 43.69 69.81 56.07 13.05 33.76 74.05 92.59 44.35 65.08 90.49 72.85 23.78 128.06 113.34 91.59 34 ER10a ExonRegion 0 43.00 14.76 82.53 47.51 25.14 21.99 15.36 49.55 48.33 76.40 71.83 9.58 18.86 72.12 96.79 60.16 55.19 68.37 43.14 21.50 107.53 81.40 82.96 35 E10a_E11a KnownJunction 0 54.68 8.81 85.98 56.84 59.93 10.28 18.24 59.80 60.24 61.57 55.07 18.61 0.00 98.65 55.13 43.58 43.01 90.20 59.86 24.74 95.82 78.62 92.36 36 ER11a ExonRegion 0 47.84 20.74 100.19 63.77 27.97 28.94 19.75 122.46 73.12 109.92 80.82 18.13 19.25 80.70 96.04 77.72 74.52 73.18 55.35 27.34 120.33 104.08 104.33 37 E11a_E12a KnownJunction 0 73.27 15.66 88.29 56.44 15.53 29.24 25.31 98.45 68.87 111.53 140.72 13.80 33.44 90.65 84.80 69.13 87.05 62.68 46.50 17.32 160.74 76.85 75.03 38 ER12a ExonRegion 0 31.36 10.28 36.25 22.35 13.98 11.60 7.60 45.97 29.34 30.18 42.99 11.41 13.57 46.22 50.96 23.75 32.55 26.06 28.84 11.24 52.57 48.29 48.32 39 IG22 Intergenic 0 4.31 1.88 6.25 4.05 3.09 5.20 2.42 11.19 6.45 7.78 5.80 2.37 0.47 6.45 5.96 4.12 5.06 5.13 5.15 3.48 18.87 6.47 13.44 40 IG22_SR1 SilentIntergenicRegion 0 4.32 2.05 6.40 4.29 3.28 5.68 2.54 12.06 6.27 7.71 5.01 2.71 0.28 4.72 4.53 3.07 3.96 4.72 5.12 3.52 15.81 6.05 11.70 41 IG22_AR1 ActiveIntergenicRegion 0 12.03 1.66 6.09 1.81 1.80 1.71 2.46 5.59 10.69 10.52 21.72 0.00 0.00 21.22 31.65 19.20 19.46 4.62 2.93 5.52 65.24 19.57 17.77 42 IG22_SR2 SilentIntergenicRegion 0 5.54 1.25 7.43 3.77 3.83 2.85 0.79 4.36 16.04 18.46 13.32 0.00 2.96 31.61 18.43 10.01 19.09 12.17 13.08 5.60 78.49 7.12 54.08 43 IG22_AR2 ActiveIntergenicRegion 0 0.13 0.00 4.01 2.15 1.01 1.55 1.47 5.46 3.09 3.33 5.87 0.00 2.33 12.38 7.88 8.65 7.25 8.15 3.47 1.22 13.76 5.78 18.38