Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BAX Gene 0 62.29 28.14 188.04 68.70 66.11 47.55 33.95 78.21 80.38 93.15 223.98 134.55 181.52 679.92 797.43 675.75 446.05 127.08 128.48 85.56 377.89 160.86 272.40 2 293288 Transcript 1 67.09 17.25 112.52 40.08 39.41 17.42 22.85 50.65 43.69 46.79 99.58 128.70 208.05 503.83 512.38 505.94 285.20 76.07 104.77 53.63 253.71 94.66 161.14 3 354470 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.66 12.01 5.19 8.20 9.35 0.00 0.00 0.00 0.00 0.00 0.00 4 415969 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 345358 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 356483 Transcript 1 2.21 0.01 3.86 3.16 3.73 0.64 2.33 3.82 3.21 0.34 3.59 5.61 15.70 17.36 25.37 24.71 12.49 2.21 1.66 2.97 12.55 3.06 16.35 7 391871 Transcript 0 3.19 0.00 4.11 8.02 3.99 2.44 0.00 6.33 5.38 6.98 2.68 5.55 0.00 4.47 4.45 11.96 25.62 9.82 29.74 6.01 13.65 0.00 20.40 8 ER1a ExonRegion 0 0.71 3.50 0.00 0.00 2.53 4.28 7.21 0.00 0.00 0.00 5.15 0.00 0.00 23.55 30.79 8.59 9.90 0.00 3.89 0.00 5.51 1.16 6.85 9 ER1b ExonRegion 1 12.52 11.22 3.33 1.41 8.50 10.03 11.06 2.26 1.90 1.27 27.58 1.88 10.48 83.63 200.56 150.70 78.87 3.15 27.51 6.38 46.56 13.56 87.86 10 E1a_E2a KnownJunction 1 43.49 30.06 29.48 12.22 14.86 24.70 19.92 26.57 23.87 24.74 54.80 6.15 6.66 70.10 178.50 590.53 243.85 78.51 67.86 16.36 152.47 32.27 337.36 11 E1a_E3a KnownJunction 0 3.19 0.00 4.11 8.02 3.99 2.44 0.00 6.33 5.38 6.98 2.68 5.55 0.00 4.47 4.45 11.96 25.62 9.82 29.74 6.01 13.65 0.00 20.40 12 I1 Intron 0 23.16 1.89 21.17 8.85 6.95 7.65 5.40 18.15 17.92 15.69 26.71 11.38 14.20 95.43 96.38 133.94 64.28 15.25 13.00 7.69 74.97 25.87 56.08 13 I1_AR1 ActiveIntronRegion 0 23.20 1.89 21.20 8.86 6.96 7.67 5.41 18.18 17.95 15.72 26.75 11.40 14.22 95.60 96.53 134.18 64.39 15.27 13.02 7.71 75.11 25.91 56.18 14 E2_Aa NovelBoundary 1 46.45 3.03 26.73 22.51 31.83 20.10 12.59 26.74 33.59 28.58 28.43 78.93 46.10 207.08 138.08 254.63 86.68 36.56 9.60 6.07 144.99 40.11 72.47 15 ER2a ExonRegion 0 25.72 15.33 49.98 12.74 19.24 37.56 11.38 26.92 18.38 34.45 76.87 66.44 103.90 300.65 303.07 388.66 208.40 6.61 68.36 25.20 161.97 36.50 172.36 16 E2_Da NovelBoundary 0 27.26 6.51 37.17 22.77 28.18 6.87 10.33 26.45 35.73 22.16 24.95 32.71 40.91 123.85 125.35 121.93 88.73 27.07 16.94 15.60 79.01 31.78 71.79 17 E2a_E3a KnownJunction 0 26.97 8.49 105.23 31.76 49.92 58.72 22.92 57.26 43.66 70.30 117.77 130.39 155.02 364.65 279.00 354.27 307.06 15.38 74.73 38.29 297.83 62.70 139.82 18 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.66 12.01 5.19 8.20 9.35 0.00 0.00 0.00 0.00 0.00 0.00 19 I2 Intron 0 29.78 2.38 9.63 4.76 21.96 4.30 6.99 4.53 6.47 9.02 38.52 18.21 9.06 66.53 90.34 106.31 63.86 8.07 9.34 7.48 56.79 26.89 37.87 20 I2_AR1 ActiveIntronRegion 0 30.48 2.44 9.82 4.87 22.48 4.40 7.15 4.64 6.63 9.20 39.41 18.64 9.21 68.10 92.43 108.78 65.36 8.26 9.52 7.63 58.05 27.53 38.76 21 E3_Aa NovelBoundary 1 46.23 8.16 77.53 27.10 18.76 11.58 32.59 50.85 55.96 28.42 38.33 67.97 79.70 181.18 168.37 267.19 133.24 41.58 35.39 27.36 107.37 56.52 129.92 22 ER3a ExonRegion 0 61.72 24.17 263.34 90.27 57.57 53.53 26.13 134.45 126.57 155.48 409.88 154.62 158.47 1098.57 1251.03 1483.72 791.20 301.75 287.83 140.29 640.98 235.85 692.73 23 E3_Da NovelBoundary 0 31.78 2.76 31.10 11.62 27.33 5.79 2.21 18.32 30.12 18.43 30.48 34.81 12.17 56.51 67.37 159.70 68.35 40.29 30.40 12.59 48.56 70.72 51.64 24 E3a_E4a KnownJunction 1 105.94 56.96 485.14 214.26 102.38 94.89 50.61 249.85 221.41 249.12 536.61 295.00 258.59 1571.85 1798.01 3806.10 920.90 852.61 675.03 200.32 814.53 375.06 1972.31 25 I3 Intron 0 38.25 4.56 25.84 15.08 23.24 7.71 7.05 18.77 26.56 16.76 46.04 49.21 57.75 87.46 99.10 157.40 77.24 22.52 17.41 7.45 69.15 45.54 58.84 26 I3_SR1 SilentIntronRegion 0 38.57 4.60 26.06 15.21 23.43 7.77 7.10 18.92 26.78 16.90 46.42 49.61 58.18 88.17 99.89 158.68 77.86 22.71 17.55 7.51 69.73 45.91 59.32 27 E4_Aa NovelBoundary 1 61.79 5.85 42.87 27.57 25.13 11.64 17.84 18.73 26.62 12.49 44.75 55.22 87.49 81.23 113.73 179.18 48.06 29.51 31.62 9.33 63.38 51.99 75.29 28 ER4a ExonRegion 0 88.07 63.00 427.71 140.70 171.66 160.77 110.64 172.87 174.36 215.80 576.00 317.10 373.62 1310.46 1526.10 1353.28 1028.08 306.84 240.21 152.02 918.80 324.35 531.86 29 E4_Da NovelBoundary 0 9.71 0.00 5.59 5.63 7.81 7.95 16.52 12.40 12.62 12.84 14.42 17.41 20.45 38.61 71.95 60.58 27.30 9.66 0.00 3.26 23.66 7.84 3.84 30 E4a_E5a KnownJunction 0 0.00 0.00 2.42 3.83 0.00 0.00 0.00 4.19 3.07 0.00 5.05 0.00 6.82 23.66 26.70 12.90 8.42 1.70 0.00 0.00 6.05 0.00 15.88 31 E4a_E6a KnownJunction 0 139.14 165.50 564.82 218.92 191.85 145.48 106.70 205.45 214.58 272.76 619.63 345.41 532.76 1731.78 1863.90 1523.02 1116.22 356.54 346.46 232.72 962.43 402.92 526.95 32 ER5a ExonRegion 0 6.63 0.04 3.75 3.85 11.19 1.91 7.00 5.06 5.13 1.01 3.71 16.83 27.47 23.81 44.97 40.37 19.97 3.15 4.97 6.56 15.61 6.65 20.98 33 E5_Da NovelBoundary 0 328.58 229.04 86.54 139.84 270.63 141.96 396.32 103.22 86.86 83.49 77.70 81.63 80.35 92.00 93.83 151.58 209.16 107.57 148.80 226.46 172.79 71.34 164.15 34 E5a_E6a KnownJunction 0 0.00 0.00 5.41 1.80 0.00 0.00 0.00 2.22 1.45 0.00 2.00 0.00 12.82 4.59 4.45 20.85 9.07 1.78 0.00 2.36 16.00 2.51 12.21 35 I5 Intron 0 16.92 0.77 8.34 6.18 11.20 2.09 6.55 9.80 2.80 5.85 4.41 15.90 29.30 26.29 43.28 91.65 35.20 12.23 6.06 4.05 17.61 13.48 24.59 36 I5_SR1 SilentIntronRegion 0 17.14 0.79 8.47 6.28 11.37 2.13 6.65 9.95 2.84 5.94 4.48 16.14 29.74 26.69 43.85 92.99 35.73 12.42 6.15 4.11 17.85 13.65 24.96 37 E6_Aa NovelBoundary 0 3.26 0.00 10.76 6.96 27.76 0.00 8.61 9.49 16.67 12.22 2.42 6.15 19.15 16.25 58.10 53.15 35.34 8.75 0.00 0.00 27.12 7.59 11.01 38 ER6a ExonRegion 0 124.21 69.68 473.17 168.26 124.28 90.42 43.25 176.22 196.49 232.89 467.06 303.19 363.50 1520.31 1624.20 1130.57 844.49 266.43 224.25 184.86 769.60 357.87 456.05 39 E6_Da KnownBoundary 1 92.09 12.23 83.59 48.88 44.57 5.28 16.74 58.12 56.16 53.54 117.82 147.35 204.69 477.61 451.20 556.86 287.14 100.40 139.20 22.56 206.15 87.93 183.10 40 E6a_E7a KnownJunction 0 104.54 22.56 362.64 109.98 73.26 63.43 15.72 124.54 126.01 140.65 309.24 128.29 107.95 514.28 1089.81 593.18 555.68 112.63 103.53 147.01 424.10 225.77 180.20 41 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER6b ExonRegion 1 67.09 17.25 112.52 40.08 39.41 17.42 22.85 50.65 43.69 46.79 99.58 128.70 208.05 503.83 512.38 505.94 285.20 76.07 104.77 53.63 253.71 94.66 161.14 43 E6_Db NovelBoundary 0 10.15 25.85 75.10 31.33 8.66 7.55 15.02 49.00 40.91 39.49 88.50 92.88 126.78 360.29 367.39 368.28 280.88 76.36 92.24 20.39 154.01 88.48 101.16 44 I6 Intron 0 28.09 11.37 45.29 21.28 32.71 8.33 15.72 17.99 14.14 13.73 54.02 79.26 152.27 352.65 433.76 294.87 154.51 43.99 67.87 28.99 133.93 48.76 106.66 45 I6_AR1 ActiveIntronRegion 0 28.27 11.44 45.60 21.43 32.94 8.38 15.83 18.12 14.24 13.83 54.39 79.81 153.28 355.03 436.73 296.91 155.55 44.30 68.34 29.19 134.82 49.08 107.36 46 E7_Aa NovelBoundary 0 72.98 9.67 106.35 27.74 19.78 12.27 11.61 24.07 40.05 31.35 96.50 66.92 136.35 188.77 363.81 266.68 163.72 53.39 43.58 39.25 169.89 47.52 62.32 47 ER7a ExonRegion 0 94.87 18.76 322.79 101.53 81.48 46.07 18.30 91.05 107.02 125.56 281.29 135.73 144.80 724.28 1222.73 525.69 550.67 97.19 75.41 112.82 442.62 206.69 211.59 48 E7_Ab KnownBoundary 0 169.88 26.31 347.86 115.40 114.86 52.47 34.54 110.45 117.50 127.14 310.55 154.40 179.05 958.80 1295.88 594.63 592.24 116.53 109.74 111.73 421.57 245.91 272.48 49 ER7b ExonRegion 0 61.37 32.38 150.57 75.18 80.95 41.87 36.08 57.43 74.38 74.79 179.98 68.83 124.93 548.20 768.73 409.05 326.55 62.01 73.79 92.97 238.84 179.78 161.27 50 IG29_AR1 ActiveIntergenicRegion 0 5.35 3.71 7.53 5.00 5.37 10.58 3.46 5.03 4.69 4.66 7.03 20.54 1.29 2.85 3.08 0.48 4.47 4.20 4.26 6.00 3.84 1.48 9.46