Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPHK2 Gene 0 15.69 10.56 32.63 18.91 16.13 12.19 7.20 36.19 24.89 57.78 55.65 18.56 24.56 84.79 104.44 70.58 70.30 59.69 38.40 33.93 52.30 23.85 32.65 2 340932 Transcript 0 5.55 1.39 3.93 0.79 3.91 1.97 0.39 8.03 2.32 8.10 8.86 4.33 4.34 16.71 19.35 19.38 14.78 7.79 4.02 2.91 4.95 5.08 8.02 3 245222 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 406269 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 426514 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.16 0.00 0.00 3.80 2.23 2.18 3.88 0.00 0.00 0.00 0.00 1.53 1.79 6 443164 Transcript 0 10.26 6.27 10.66 7.91 11.12 5.71 3.99 12.49 8.19 15.97 9.59 7.92 11.80 13.11 18.76 17.22 16.70 17.93 11.07 13.10 10.68 6.49 10.81 7 ER1a ExonRegion 0 4.07 4.44 2.55 2.18 3.24 2.23 1.87 1.04 3.10 4.09 12.39 0.31 1.56 14.64 17.64 12.35 20.42 11.34 9.15 2.74 2.66 2.96 9.65 8 E1a_E2a KnownJunction 0 17.93 6.71 3.31 1.63 0.00 0.00 0.00 0.00 2.37 10.77 32.38 6.30 0.00 48.50 48.95 42.04 43.57 11.44 0.00 5.11 14.89 11.57 23.65 9 I1 Intron 0 5.35 1.89 6.00 0.68 1.35 2.16 1.12 0.00 2.02 2.31 7.50 7.47 3.53 10.44 13.72 16.54 9.74 3.95 4.30 3.59 5.39 4.39 11.14 10 I1_AR1 ActiveIntronRegion 0 5.37 1.89 6.02 0.69 1.36 2.17 1.12 0.00 2.02 2.31 7.52 7.50 3.55 10.47 13.77 16.59 9.77 3.96 4.31 3.60 5.40 4.41 11.17 11 ER2a ExonRegion 1 12.01 3.59 9.79 7.51 1.38 11.90 0.39 2.79 11.09 16.81 81.45 15.23 4.73 90.91 77.52 74.22 95.87 30.18 20.84 15.10 34.74 20.31 49.30 12 E2_Ab KnownBoundary 1 9.63 9.14 13.36 8.09 7.39 13.91 2.25 2.55 20.08 26.22 93.92 23.41 12.50 155.34 144.63 121.25 86.77 73.87 29.65 17.51 46.58 35.45 68.97 13 ER2b ExonRegion 1 4.90 3.37 8.19 2.26 2.68 3.62 3.59 2.68 11.51 20.52 84.79 10.14 11.11 114.59 115.29 86.82 101.37 44.39 17.27 19.99 42.16 31.47 45.13 14 E2_Da NovelBoundary 0 9.19 5.72 2.90 14.08 15.87 7.44 1.77 2.46 8.13 6.66 2.68 5.25 0.00 25.31 18.42 16.83 22.91 2.07 18.54 8.76 5.07 10.29 27.49 15 E2a_E3b KnownJunction 0 0.00 0.00 5.56 5.03 0.00 0.00 3.44 1.64 11.17 20.31 70.54 11.25 15.75 104.13 114.22 54.52 104.07 31.50 14.02 20.52 46.27 26.88 35.34 16 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.74 0.00 0.00 0.00 4.45 0.00 3.93 0.00 0.00 0.00 0.00 3.06 3.59 17 I2 Intron 0 9.89 6.93 8.78 9.01 12.16 7.75 5.84 6.94 7.54 13.77 12.92 13.37 13.16 14.68 17.03 22.45 21.27 21.52 15.06 16.07 13.44 6.05 15.43 18 I2_SR2 SilentIntronRegion 0 14.79 4.62 7.34 5.32 14.02 12.17 4.86 2.25 2.89 4.48 7.76 4.27 3.95 6.64 8.82 16.09 17.86 7.70 6.68 3.34 4.62 0.00 10.77 19 I2_SR3 SilentIntronRegion 0 29.39 12.79 8.04 11.67 10.64 7.13 5.96 7.78 5.36 7.51 15.49 7.55 8.25 13.36 14.00 16.48 30.37 15.58 9.02 11.61 11.04 6.75 11.18 20 I2_AR4 ActiveIntronRegion 0 17.30 16.06 14.98 20.21 27.74 14.31 10.98 7.76 12.69 16.27 21.65 36.16 34.65 27.69 26.37 41.51 38.62 24.92 14.87 22.67 18.24 17.62 24.64 21 I2_AR5 ActiveIntronRegion 0 4.82 4.68 8.05 7.02 8.10 5.11 4.98 8.34 8.03 17.18 12.30 10.61 10.66 13.77 17.56 20.50 17.48 26.38 18.73 19.15 15.32 4.56 15.40 22 E3_Aa NovelBoundary 0 16.52 11.77 11.68 11.05 4.24 15.33 0.00 17.33 11.26 42.25 7.16 0.00 0.00 21.07 10.26 28.71 30.29 38.47 47.15 15.28 14.39 3.12 21.51 23 ER3a ExonRegion 0 20.52 12.54 21.32 15.82 22.24 11.42 7.99 24.98 16.38 31.95 19.18 15.85 23.60 26.22 37.52 34.44 33.40 35.87 22.14 26.20 21.36 12.98 21.62 24 E3_Ab KnownBoundary 0 0.00 8.81 10.47 3.83 15.53 17.26 18.06 10.72 1.10 18.67 9.48 12.15 19.48 7.18 14.71 23.93 30.76 25.33 7.44 15.08 35.09 3.12 3.41 25 ER3b ExonRegion 0 10.53 7.42 29.63 13.55 7.89 11.18 5.30 26.33 19.11 50.20 67.18 15.52 12.51 98.57 113.46 71.55 92.41 67.05 47.98 33.90 68.06 28.89 39.28 26 E3_Da KnownBoundary 1 6.67 8.29 40.80 16.91 7.39 10.79 3.93 62.19 28.24 64.60 71.97 0.00 6.33 90.29 78.13 86.05 90.60 84.07 40.66 35.73 78.89 22.66 30.47 27 E3a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER3c ExonRegion 1 10.43 8.61 22.43 9.32 11.19 18.61 6.35 28.14 26.75 54.06 64.16 13.94 7.66 95.78 94.89 69.08 88.68 64.54 32.48 34.61 70.17 18.88 29.72 29 E3_Ac KnownBoundary 1 23.34 8.55 36.43 16.88 27.50 30.38 18.77 33.97 40.88 78.65 97.81 33.46 5.84 114.66 143.15 126.89 155.12 111.68 66.26 50.11 111.08 26.27 66.41 30 ER3d ExonRegion 0 6.94 6.40 25.99 10.33 14.32 11.76 10.23 29.03 26.92 66.88 63.36 11.11 14.22 103.88 108.02 74.03 76.28 46.90 35.67 36.37 68.73 19.60 25.40 31 E3_Db NovelBoundary 0 0.00 3.16 17.06 9.79 3.90 0.00 3.67 9.65 8.83 17.06 10.16 6.90 0.00 19.19 4.82 19.31 13.00 29.02 0.00 14.83 3.15 2.82 22.45 32 E3b_E4a KnownJunction 0 6.82 6.25 39.24 14.08 27.25 10.45 7.99 43.78 48.38 59.36 71.07 26.11 20.45 99.89 134.12 84.76 41.42 54.76 25.69 42.82 82.78 22.60 21.94 33 I3 Intron 0 10.71 6.08 16.91 7.52 13.91 7.05 4.34 13.03 13.11 20.70 13.08 5.59 3.97 17.79 22.37 29.64 16.22 24.34 12.48 15.31 13.18 7.87 10.88 34 I3_AR1 ActiveIntronRegion 1 5.78 5.56 2.77 2.47 12.18 5.01 2.01 7.82 6.15 9.86 11.74 8.66 2.35 12.50 12.17 9.92 14.03 11.16 12.57 9.04 3.34 3.16 9.81 35 I3_AR2 ActiveIntronRegion 0 12.79 6.62 22.45 9.50 15.30 8.17 5.16 15.54 15.98 25.36 14.24 4.86 4.58 20.31 26.56 36.99 17.59 29.75 12.93 17.69 17.10 9.85 11.69 36 E4_Aa NovelBoundary 0 32.52 0.00 23.89 12.35 3.57 2.27 8.04 32.20 16.61 15.10 10.48 0.00 0.00 18.78 49.08 40.84 39.46 31.67 27.48 15.15 17.05 12.68 16.05 37 ER4a ExonRegion 0 29.22 16.46 70.88 34.19 26.04 13.01 11.82 72.64 52.25 108.20 99.40 26.55 26.45 151.88 176.34 141.10 113.75 92.38 52.39 61.69 102.78 36.46 47.30 38 E4a_E5a KnownJunction 0 39.41 24.34 105.91 46.25 19.19 22.77 3.75 77.26 61.46 115.43 108.13 43.21 38.80 178.94 212.00 140.31 135.30 103.76 72.10 68.52 123.80 53.09 51.22 39 E5_Aa NovelBoundary 0 6.37 3.22 13.57 4.03 3.74 2.38 3.89 6.20 5.90 4.16 0.00 0.00 0.00 0.00 5.07 0.00 0.00 2.07 0.00 5.31 11.80 0.00 0.00 40 ER5a ExonRegion 0 31.26 15.95 75.32 35.51 14.34 16.85 9.35 84.24 70.82 113.24 114.77 55.05 56.13 187.17 219.67 150.14 153.65 99.53 65.82 73.03 126.01 49.87 46.06 41 E5_Da NovelBoundary 0 7.48 0.00 11.15 1.30 0.00 0.00 2.25 7.93 4.37 15.10 5.05 0.00 0.00 4.59 18.54 25.29 13.18 6.51 14.02 6.14 2.53 2.82 0.00 42 E5a_E6a KnownJunction 0 20.67 18.75 71.08 46.38 15.96 20.44 10.11 87.45 58.68 128.00 115.92 50.12 55.19 229.03 240.19 145.77 185.13 104.34 84.71 86.10 107.18 56.58 44.22 43 E6_Aa NovelBoundary 0 10.96 3.09 6.50 0.00 3.48 2.78 0.00 7.43 2.60 7.52 2.68 7.65 0.00 4.94 10.63 3.42 0.00 15.09 3.48 8.56 0.00 5.27 4.35 44 ER6a ExonRegion 0 15.55 9.76 88.29 31.05 15.99 20.74 10.79 98.72 55.90 119.61 117.69 48.86 50.98 170.39 200.64 138.51 162.60 143.42 70.90 66.60 121.17 51.32 62.68 45 E6_Da NovelBoundary 0 6.89 9.93 22.32 5.73 3.99 0.00 12.59 21.15 6.80 18.67 38.54 6.30 13.64 57.27 79.49 69.04 33.75 19.98 27.39 8.56 17.67 10.90 7.00 46 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 E6a_E8a KnownJunction 0 12.82 5.13 89.68 37.69 42.11 30.04 18.64 107.94 57.32 95.28 81.97 30.61 39.77 95.12 84.93 110.31 84.81 140.32 87.44 55.74 94.21 46.90 64.02 48 E6a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.58 0.00 0.00 7.59 0.00 4.36 3.83 0.00 0.00 0.00 0.00 0.00 0.00 49 E7_Aa NovelBoundary 0 14.22 6.05 8.43 3.50 16.21 10.45 1.81 13.84 12.15 25.55 28.38 11.85 13.15 92.94 79.12 68.44 48.71 14.01 23.81 11.38 22.30 18.06 16.56 50 ER7a ExonRegion 0 16.65 4.17 11.78 2.38 11.72 5.91 1.16 24.09 6.96 24.31 26.58 12.99 13.02 50.13 58.06 58.14 44.33 23.38 12.05 8.73 14.86 15.23 24.07 51 E7_Da NovelBoundary 0 26.38 6.64 24.16 13.72 22.50 10.73 5.74 19.80 12.90 25.76 34.01 30.31 36.69 106.89 68.36 101.34 82.47 31.46 36.42 9.46 12.54 29.82 32.18 52 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 I7 Intron 0 16.13 4.17 9.10 7.14 14.12 4.84 3.49 21.16 8.09 26.56 23.23 14.03 18.27 56.70 62.38 48.78 43.54 20.99 13.07 16.21 16.79 16.49 17.21 54 I7_AR1 ActiveIntronRegion 0 16.22 4.20 9.15 7.18 14.20 4.87 3.51 21.28 8.14 26.71 23.35 14.11 18.38 57.02 62.74 49.05 43.79 21.12 13.15 16.31 16.89 16.58 17.31 55 E8_Aa NovelBoundary 1 27.71 12.63 20.90 18.11 24.53 10.56 10.95 24.52 18.58 50.10 42.54 49.37 76.46 84.23 89.13 95.53 47.78 38.30 26.45 12.14 40.46 22.90 19.97 56 ER8a ExonRegion 0 15.67 11.35 91.33 44.78 22.13 21.12 11.84 98.88 52.62 162.71 136.88 73.96 109.89 206.62 257.65 175.27 178.45 182.49 104.20 73.17 131.24 65.49 70.45 57 E8_Ab KnownBoundary 0 24.60 11.05 86.60 52.71 19.02 8.46 7.73 95.42 65.36 174.63 134.03 57.02 78.73 220.03 244.76 177.22 233.85 123.41 119.72 55.22 130.66 67.23 107.73 58 ER8b ExonRegion 0 16.14 10.37 43.14 22.49 18.36 15.84 7.31 45.96 30.87 83.21 78.54 24.62 43.11 125.36 158.42 95.14 91.71 84.40 56.12 44.98 73.49 31.90 43.71 59 E8_Da KnownBoundary 1 29.86 17.96 45.80 34.56 24.53 13.34 17.22 55.66 31.48 87.60 81.23 19.36 0.00 121.14 168.12 85.62 70.13 95.18 44.61 63.66 69.81 45.07 58.22 60 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER8c ExonRegion 1 25.62 21.03 39.45 27.17 20.61 13.03 10.79 46.82 30.83 88.68 87.80 8.94 2.69 123.85 139.38 64.82 69.04 72.89 44.87 37.48 68.78 32.05 53.05 62 E8_Db KnownBoundary 1 32.30 27.50 33.06 15.95 27.67 17.09 6.36 39.80 26.85 74.68 86.97 0.00 11.85 119.20 167.50 75.54 96.77 44.02 29.18 34.45 67.28 22.41 41.91 63 ER8d ExonRegion 1 16.05 17.17 32.18 29.47 20.25 14.49 9.83 39.75 29.73 61.82 55.96 6.65 3.99 87.98 122.57 73.26 61.48 57.72 43.63 36.79 53.77 25.32 32.65 64 E8_Dc NovelBoundary 0 21.11 6.45 3.46 4.10 20.63 2.61 9.98 7.64 2.89 5.00 7.84 19.66 0.00 0.00 15.58 8.03 4.77 4.35 4.52 3.13 3.15 2.69 17.07 65 E9_Aa NovelBoundary 0 0.00 6.64 1.21 2.03 0.00 6.47 0.00 9.61 15.22 4.22 4.74 0.00 13.64 2.65 13.23 3.85 13.00 2.16 8.94 0.00 3.15 0.00 3.93 66 ER9a ExonRegion 0 7.25 1.83 4.28 2.20 1.45 0.33 1.67 3.24 2.65 3.98 5.54 3.29 1.39 8.98 8.54 4.01 8.82 2.15 1.72 3.45 1.60 1.88 1.06