Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPP5C Gene 0 75.86 106.09 178.57 106.39 68.92 79.45 62.34 151.48 162.50 179.52 232.34 92.95 81.75 262.74 294.80 206.95 227.48 233.31 136.22 179.87 149.30 157.27 133.06 2 12443 Transcript 1 8.64 11.10 6.13 3.49 4.34 10.82 7.62 7.40 7.37 7.52 35.68 0.00 0.54 12.01 36.67 24.31 33.17 15.78 10.03 23.02 29.52 18.89 21.86 3 451918 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 478046 Transcript 0 1.18 0.00 3.78 3.47 0.00 0.48 0.16 7.53 5.17 3.29 3.45 0.42 0.46 3.18 0.14 1.19 0.37 1.09 0.12 0.00 3.51 1.42 2.69 5 391919 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 467902 Transcript 0 9.36 49.56 54.67 33.04 34.43 127.53 84.42 65.71 72.45 83.27 124.91 34.31 35.98 139.45 142.09 81.85 143.50 116.97 49.64 112.25 104.34 64.59 62.24 7 486994 Transcript 0 59.99 70.65 44.83 65.46 43.09 24.35 37.00 59.67 80.18 66.25 52.14 54.48 75.40 61.81 64.07 61.72 55.56 57.04 42.49 49.40 32.20 53.57 42.15 8 493347 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 487483 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 491003 Transcript 0 5.42 4.52 21.99 14.06 2.25 6.96 3.81 16.90 15.32 16.31 17.47 2.14 6.79 17.63 29.26 16.87 20.20 30.38 5.99 12.32 15.12 6.11 8.56 11 492109 Transcript 0 25.08 5.61 14.05 4.38 5.76 10.11 11.30 8.08 11.43 11.13 28.93 15.70 12.27 44.41 70.54 56.32 30.01 17.69 18.98 12.74 11.06 11.70 14.36 12 467502 Transcript 0 6.82 6.53 13.16 9.75 2.52 3.78 4.53 7.54 9.95 12.22 6.73 0.36 2.73 7.56 13.98 9.36 14.65 17.89 6.82 8.00 8.49 3.41 9.62 13 ER1a ExonRegion 0 8.64 11.10 6.13 3.49 4.34 10.82 7.62 7.40 7.37 7.52 35.68 0.00 0.54 12.01 36.67 24.31 33.17 15.78 10.03 23.02 29.52 18.89 21.86 14 E1_Ab KnownBoundary 0 3.19 2.83 0.00 1.63 0.00 0.00 0.00 4.23 1.24 3.22 6.63 0.00 0.00 7.24 5.19 3.67 7.95 2.03 0.00 0.00 14.70 2.51 8.02 15 E1_Ac KnownBoundary 0 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Ad KnownBoundary 1 129.65 258.11 98.55 53.14 96.77 326.52 196.44 104.41 121.27 164.05 460.96 0.00 31.65 223.91 669.26 434.25 573.73 437.21 284.53 479.83 303.33 167.66 298.60 17 ER1b ExonRegion 1 74.08 160.14 57.29 36.80 50.84 190.72 101.61 70.87 76.89 110.39 293.32 0.00 16.42 133.58 459.12 268.98 368.05 270.70 163.25 289.89 196.13 104.70 198.96 18 ER1c ExonRegion 1 95.55 226.89 91.73 52.37 82.95 282.93 160.01 95.31 115.75 167.12 450.92 0.00 40.20 256.38 636.20 391.90 552.19 401.49 259.83 406.99 277.35 164.60 273.11 19 ER1d ExonRegion 1 80.70 160.41 144.56 76.80 98.73 252.31 163.33 156.86 194.31 225.04 385.41 58.43 107.57 228.27 330.85 326.52 473.06 507.11 251.50 338.08 277.79 181.99 257.64 20 E1a_E2a KnownJunction 0 3.33 16.84 122.47 51.64 23.77 18.51 11.61 108.64 150.40 134.98 210.21 47.87 71.75 119.84 158.23 93.22 199.06 131.24 25.60 117.86 219.87 76.24 43.96 21 ER2a ExonRegion 1 18.82 30.06 195.03 102.09 18.95 32.89 18.55 205.60 253.11 280.25 441.14 62.02 100.16 362.64 479.29 348.93 485.64 418.87 234.70 418.82 339.33 220.93 263.29 22 E2_Da KnownBoundary 1 31.86 68.21 173.86 100.02 26.91 49.40 26.19 166.97 227.23 195.90 278.12 91.98 228.23 330.04 269.11 250.19 218.42 411.76 116.24 282.51 165.87 144.76 187.29 23 E2a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER2b ExonRegion 0 23.93 88.19 192.43 94.46 72.30 147.06 90.31 191.19 229.38 235.36 274.88 211.23 183.09 458.28 432.12 276.58 284.89 372.64 132.50 295.99 205.67 177.62 165.69 25 E2_Ab NovelBoundary 0 52.38 130.63 227.14 111.47 181.66 375.64 262.46 244.76 248.84 291.05 360.78 164.90 94.47 626.94 629.83 301.37 401.78 454.08 190.78 446.91 324.83 218.24 209.40 26 E2b_E3b KnownJunction 1 40.67 227.26 246.09 131.52 202.29 607.83 389.78 253.43 285.41 321.83 434.74 66.32 134.08 472.54 443.42 244.98 506.97 359.94 156.24 408.69 352.44 265.63 206.15 27 ER2c ExonRegion 0 39.01 149.67 223.02 110.71 143.15 474.16 291.36 231.09 248.38 285.31 394.76 125.41 99.90 560.97 518.55 274.53 452.11 374.54 167.66 416.24 343.26 243.70 203.51 28 ER3a ExonRegion 0 15.87 95.58 105.99 55.88 61.54 238.39 156.89 124.45 125.98 151.39 223.25 54.12 60.97 248.49 258.21 135.23 244.27 185.70 76.45 182.98 179.60 115.64 93.97 29 ER3b ExonRegion 0 97.14 247.21 259.13 127.78 86.59 181.96 141.93 274.98 270.18 324.39 458.31 170.82 147.40 550.25 521.18 385.12 471.53 469.91 187.55 350.25 305.73 280.31 206.68 30 E3a_E4a KnownJunction 0 233.08 293.90 259.98 159.22 127.59 152.13 105.64 335.33 349.76 436.26 634.21 250.58 349.81 861.62 777.68 555.07 673.77 660.10 317.94 489.29 365.97 411.80 330.44 31 ER4a ExonRegion 0 121.63 214.48 375.39 203.15 156.27 150.91 120.60 370.19 392.78 435.89 703.46 332.02 240.31 765.92 664.08 610.26 676.28 645.00 429.48 457.86 374.56 491.74 373.80 32 E4_Da KnownBoundary 0 3.56 3.35 7.36 22.87 16.89 32.25 20.80 11.83 25.38 17.35 52.12 6.30 13.47 36.67 19.28 51.10 56.10 89.83 44.90 65.32 23.48 18.55 19.80 33 E4a_E5c KnownJunction 0 136.91 207.66 420.51 191.02 207.13 182.28 130.15 442.16 417.07 487.36 748.19 326.66 161.68 662.20 514.62 531.66 756.61 546.65 298.55 422.43 434.11 504.81 300.14 34 E4a_E5e KnownJunction 0 10.96 0.00 4.32 7.36 0.00 0.00 4.50 4.64 9.84 7.71 12.53 12.15 6.82 40.08 24.85 49.82 25.90 8.71 0.00 8.31 0.00 2.94 0.00 35 ER4b ExonRegion 0 2.84 3.55 3.34 10.20 7.32 16.66 11.95 6.97 18.91 15.14 26.57 14.50 10.98 30.42 25.98 28.48 42.73 48.24 22.84 41.53 29.08 13.53 30.50 36 E4_Db NovelBoundary 0 17.04 3.35 13.10 19.05 7.72 10.73 10.20 15.12 43.98 31.67 32.27 0.00 6.82 35.49 56.49 38.54 65.73 109.06 8.75 65.96 40.40 22.41 44.30 37 I4 Intron 0 14.54 11.56 6.63 15.07 11.83 13.32 12.23 17.08 28.77 23.07 25.94 14.32 11.46 39.57 20.26 38.95 38.31 57.44 27.40 31.08 28.18 17.44 26.89 38 I4_AR1 ActiveIntronRegion 0 13.20 7.89 3.54 11.26 13.72 12.20 10.09 14.99 29.84 22.50 27.32 6.88 11.85 41.73 17.22 42.00 39.34 72.83 28.68 35.98 33.89 17.90 31.74 39 I4_SR3 SilentIntronRegion 0 20.07 19.28 13.19 24.75 10.87 16.97 17.63 24.41 33.65 29.32 27.92 26.61 13.45 41.48 27.11 42.95 43.20 45.19 30.91 26.89 23.37 20.22 22.53 40 E5_Aa NovelBoundary 1 46.60 64.33 86.90 128.19 98.98 34.24 70.09 156.04 137.12 94.07 98.02 113.89 294.62 50.86 90.98 46.65 104.91 49.08 52.05 80.22 19.09 66.07 22.45 41 ER5a ExonRegion 1 102.53 126.94 76.76 101.98 78.41 38.70 59.10 91.90 104.76 86.95 71.65 98.23 134.18 68.83 70.50 73.73 69.10 60.22 55.66 68.28 33.50 76.89 63.24 42 E5_Ab KnownBoundary 0 28.00 27.56 50.86 44.32 11.29 17.09 11.75 25.01 57.99 37.12 30.43 40.21 39.45 52.86 53.53 37.08 29.08 51.69 9.32 52.48 66.41 16.96 20.66 43 ER5b ExonRegion 0 24.12 24.54 37.89 33.47 14.84 21.55 16.01 25.83 51.57 35.85 48.63 24.11 24.20 49.92 51.40 41.34 40.51 45.16 17.59 43.18 41.44 25.83 25.93 44 E5_Ac KnownBoundary 1 67.79 70.97 199.08 109.88 60.02 63.54 66.55 202.41 225.14 230.02 198.21 66.02 20.29 170.05 85.54 198.24 202.99 307.29 62.68 179.93 141.04 145.92 113.96 45 ER5c ExonRegion 0 131.45 207.17 408.78 221.84 168.82 161.21 132.54 382.28 439.95 471.01 791.27 343.09 264.88 697.17 590.78 609.19 608.63 663.17 299.03 439.51 414.09 473.54 359.63 46 E5_Da KnownBoundary 0 42.16 20.85 13.81 32.06 12.22 14.37 20.23 29.20 48.67 33.60 38.43 12.60 48.70 32.14 38.45 48.96 27.40 47.22 26.07 31.89 19.09 14.08 19.72 47 E5a_E5e KnownJunction 0 117.80 264.36 454.01 228.78 167.32 132.31 111.95 333.69 415.97 469.90 681.49 383.22 227.91 729.89 642.44 472.87 600.28 565.47 394.55 376.54 257.98 469.72 396.85 48 ER5d ExonRegion 0 17.44 14.37 12.89 28.95 7.77 10.01 14.91 27.43 55.61 45.55 32.63 10.73 16.62 54.80 57.65 49.72 42.01 53.87 29.33 30.53 30.90 30.26 21.07 49 E5_Ad KnownBoundary 1 17.63 32.95 35.95 40.19 19.19 11.13 17.49 42.68 69.41 85.15 53.80 17.11 32.63 53.45 50.07 30.76 92.85 63.55 12.61 54.01 56.96 27.13 26.72 50 ER5e ExonRegion 0 39.36 21.47 33.19 45.39 26.71 24.59 17.10 45.69 58.43 60.55 43.69 19.61 22.45 55.16 58.30 69.82 66.95 67.62 41.18 45.75 50.05 42.00 39.09 51 E5_Ae KnownBoundary 0 27.34 19.14 19.63 38.46 12.65 22.37 12.14 23.21 21.87 18.00 23.16 27.91 40.74 40.38 25.34 43.83 22.63 31.46 13.18 49.79 32.31 19.78 23.22 52 E5_Af KnownBoundary 1 104.91 230.68 386.12 236.33 148.98 100.28 123.21 314.50 328.44 403.79 399.00 264.39 66.23 564.31 517.96 352.47 437.12 364.17 288.57 310.89 211.59 401.75 239.96 53 ER5f ExonRegion 0 129.56 260.01 479.56 314.53 179.47 154.96 137.98 429.27 464.67 536.26 746.79 440.99 237.18 886.07 744.38 579.14 692.72 618.86 398.40 441.79 344.72 566.87 395.82 54 ER5g ExonRegion 0 163.25 346.56 587.33 383.85 178.61 260.64 176.35 553.78 563.67 632.15 800.45 397.64 218.59 898.51 731.60 696.50 825.89 669.83 581.56 500.63 458.53 656.46 465.95 55 E5_Db NovelBoundary 0 17.26 3.35 12.03 2.06 20.37 5.56 18.06 8.34 7.12 8.89 35.22 24.46 19.15 37.55 40.79 77.50 39.64 26.78 12.33 24.35 23.85 28.90 15.19 56 E5b_E6b KnownJunction 1 220.19 368.55 493.89 277.12 225.38 271.66 222.80 446.64 500.49 533.61 682.54 463.50 191.55 817.53 715.99 574.98 637.87 520.12 403.21 369.63 408.53 576.21 371.93 57 I5_AR1 ActiveIntronRegion 0 15.90 5.47 8.17 2.43 9.24 5.19 2.70 2.82 4.96 6.75 10.05 9.71 11.78 23.53 30.91 33.82 20.28 12.84 7.66 10.48 14.17 0.95 11.15 58 I5_AR2 ActiveIntronRegion 0 8.14 2.94 12.42 5.57 5.20 4.50 7.69 7.14 11.96 9.74 26.98 8.14 11.14 36.27 52.02 46.19 30.74 25.78 10.64 15.57 8.39 10.46 12.75 59 ER6a ExonRegion 0 25.08 5.61 14.05 4.38 5.76 10.11 11.30 8.08 11.43 11.13 28.93 15.70 12.27 44.41 70.54 56.32 30.01 17.69 18.98 12.74 11.06 11.70 14.36 60 E6_Ab KnownBoundary 0 36.45 11.58 5.20 5.53 15.37 12.15 11.79 2.09 12.15 14.26 18.37 6.30 0.00 46.50 64.03 31.10 46.00 31.92 13.08 23.59 11.12 11.02 11.61 61 ER6b ExonRegion 0 262.23 341.66 576.34 338.19 282.92 237.66 206.59 470.63 533.10 599.72 754.31 412.33 245.80 811.46 765.99 610.76 723.52 728.45 398.08 497.26 446.35 511.12 394.63 62 E6a_E7a KnownJunction 0 394.00 471.69 657.52 439.10 419.10 390.06 278.09 532.57 561.92 641.09 719.92 403.03 344.78 1238.69 1259.41 798.51 870.69 818.29 639.64 719.00 458.70 728.13 516.96 63 ER7a ExonRegion 0 322.18 373.19 689.87 393.95 310.16 291.70 199.40 515.97 520.72 620.22 808.06 384.24 268.18 969.94 893.18 699.94 707.13 759.19 448.34 552.54 443.59 603.99 429.20 64 E7_Da KnownBoundary 0 401.18 393.55 640.72 379.81 336.59 263.43 193.65 454.07 438.13 503.23 820.52 349.76 218.98 820.42 892.52 596.94 794.20 573.80 344.10 536.97 369.31 417.67 405.99 65 ER7b ExonRegion 0 250.99 321.43 574.01 317.75 215.40 207.00 155.88 386.67 431.38 511.49 657.24 329.93 196.71 686.57 827.11 530.26 589.79 587.26 277.50 473.47 399.07 368.91 286.32 66 E7_Ab KnownBoundary 0 236.04 320.80 437.21 213.66 161.38 190.17 164.06 272.77 325.86 367.20 401.52 241.13 191.87 530.46 857.53 402.37 370.64 410.84 242.64 389.19 353.86 287.74 176.27 67 ER7c ExonRegion 0 194.61 295.91 497.17 249.37 164.52 206.87 151.54 318.04 389.16 415.02 464.78 267.96 214.09 603.43 914.37 472.33 456.95 535.10 269.89 435.54 330.79 294.28 218.26 68 E7b_E8a KnownJunction 0 232.63 376.45 554.74 270.43 198.30 229.02 204.47 380.39 408.76 407.36 524.61 319.00 252.58 761.38 1041.97 543.45 522.95 563.14 320.48 551.22 341.07 342.97 294.25 69 ER8a ExonRegion 0 229.71 382.50 650.57 399.20 225.55 254.04 197.57 504.59 494.79 543.18 584.72 238.47 216.81 834.80 1022.99 624.25 608.12 772.74 413.08 563.42 363.81 474.66 395.98 70 E8_Da KnownBoundary 0 6.82 3.09 17.39 14.12 0.00 14.14 5.61 9.32 12.27 9.48 4.42 0.00 0.00 4.71 15.20 10.17 8.13 14.88 3.48 3.26 10.93 0.00 10.76 71 E8a_E9a KnownJunction 0 221.22 354.67 548.12 454.45 164.60 135.38 159.82 381.95 457.14 489.05 537.45 206.47 161.19 749.02 1103.41 745.53 497.90 659.85 422.22 485.32 312.66 586.49 492.29 72 ER8b ExonRegion 0 6.82 6.53 13.16 9.75 2.52 3.78 4.53 7.54 9.95 12.22 6.73 0.36 2.73 7.56 13.98 9.36 14.65 17.89 6.82 8.00 8.49 3.41 9.62 73 ER9a ExonRegion 0 128.13 199.89 573.59 377.02 110.88 105.29 90.09 417.53 445.88 479.10 477.71 132.42 146.31 562.14 846.32 539.98 380.41 596.82 337.73 440.06 284.44 401.31 346.09 74 E9a_E10a KnownJunction 1 160.92 192.20 507.37 234.57 155.43 113.51 103.91 387.90 362.18 400.97 454.96 92.43 63.15 480.02 639.97 412.28 370.83 501.01 241.98 445.50 298.38 290.49 218.79 75 ER10a ExonRegion 0 141.27 214.90 612.57 281.93 121.47 134.51 96.96 438.50 431.14 456.01 459.54 172.98 90.42 524.14 783.34 476.23 452.30 594.80 324.02 440.28 308.72 295.76 259.45 76 E10_Da KnownBoundary 0 102.76 215.22 508.47 202.67 125.72 132.48 105.95 342.11 320.66 340.80 338.14 140.75 64.77 474.37 718.71 447.75 429.64 457.40 267.87 355.06 248.34 216.71 232.87 77 E10_Db KnownBoundary 0 336.36 304.02 436.44 274.49 226.06 274.22 191.09 345.93 334.17 333.71 475.23 144.20 134.41 629.29 936.90 636.41 509.58 513.23 457.42 460.72 270.34 393.79 300.39 78 ER10b ExonRegion 0 214.55 289.09 630.03 308.80 183.08 234.44 162.43 471.14 443.86 464.44 540.50 176.60 140.45 685.21 967.64 673.11 605.80 694.85 457.69 513.32 336.36 386.33 334.31 79 ER10c ExonRegion 0 239.44 230.82 540.34 278.54 173.99 227.67 155.74 404.00 419.16 457.82 604.44 147.39 143.55 626.24 897.08 548.19 529.86 647.96 355.05 429.80 386.85 366.65 317.63 80 E10c_E11a KnownJunction 1 305.02 183.85 474.94 227.84 160.02 173.99 130.94 296.76 349.42 298.38 485.86 77.58 140.25 590.91 624.51 556.26 371.29 609.70 334.69 350.52 260.76 314.86 333.86 81 ER11a ExonRegion 0 239.61 237.48 589.72 297.23 144.65 139.73 108.79 453.87 396.97 435.77 561.04 112.51 111.36 630.97 774.32 501.53 481.73 623.71 391.72 397.53 331.74 334.99 312.82 82 E11_Da KnownBoundary 0 3.19 9.54 37.02 19.11 7.39 5.05 16.65 32.20 30.27 27.86 32.64 6.00 20.94 16.60 27.32 14.78 26.93 61.31 4.80 8.25 22.55 5.20 13.74 83 E11a_E11b KnownJunction 1 401.40 409.60 588.18 263.37 179.37 145.31 121.14 475.68 397.22 438.04 663.27 98.43 118.99 609.57 1042.34 564.04 479.85 494.58 348.53 482.57 423.61 335.01 338.55 84 E11a_E12a KnownJunction 0 2.89 0.00 1.83 0.00 0.00 0.00 0.00 17.17 6.25 1.67 4.63 0.00 0.00 4.53 0.00 0.00 0.00 3.94 0.00 0.00 5.44 0.00 0.00 85 ER11b ExonRegion 0 5.42 4.52 21.99 14.06 2.25 6.96 3.81 16.90 15.32 16.31 17.47 2.14 6.79 17.63 29.26 16.87 20.20 30.38 5.99 12.32 15.12 6.11 8.56 86 ER11c ExonRegion 1 253.98 293.85 528.75 251.45 120.41 113.70 92.68 440.76 355.71 411.74 605.00 90.92 96.15 591.99 837.01 490.40 463.78 480.41 318.54 414.89 397.77 292.73 325.97 87 ER11d ExonRegion 1 60.36 79.72 175.65 73.65 55.85 58.41 44.44 113.10 117.00 157.97 204.59 36.44 27.99 318.86 402.73 164.82 192.62 160.99 115.41 159.46 158.76 144.94 114.37 88 E11_Dc KnownBoundary 0 10.30 14.54 73.65 23.21 7.81 15.67 4.33 39.55 48.73 59.50 48.49 6.30 12.66 47.27 127.82 33.32 31.23 33.58 15.34 23.78 41.70 51.25 18.01 89 ER11e ExonRegion 1 16.27 24.46 45.34 15.30 5.48 28.78 14.90 36.20 26.41 34.90 57.51 2.39 7.33 80.32 104.91 50.10 31.44 18.79 17.63 32.14 50.64 33.59 34.20 90 ER11f ExonRegion 0 0.00 0.00 1.23 2.73 0.00 5.50 1.32 3.46 1.24 0.00 1.93 0.00 0.00 3.25 2.90 0.00 0.00 1.85 0.00 0.00 4.41 0.00 0.00 91 E12_Aa NovelBoundary 0 3.19 0.00 55.68 0.00 0.00 0.00 0.00 2.18 7.87 7.20 0.00 0.00 6.01 0.00 8.90 7.26 4.58 3.94 4.42 29.34 19.34 0.00 22.96 92 ER12a ExonRegion 0 1.84 0.00 5.17 5.57 0.00 1.65 0.63 8.15 7.78 3.28 3.96 1.68 1.82 2.62 0.24 0.44 1.44 0.43 0.00 0.00 2.29 1.68 1.33 93 E12a_E13a KnownJunction 0 0.00 0.00 6.12 6.76 0.00 0.00 0.00 4.39 5.84 7.06 4.32 0.00 0.00 4.83 0.00 4.02 0.00 0.00 0.00 0.00 5.25 3.00 7.68 94 ER13a ExonRegion 0 0.00 0.00 1.99 1.56 0.00 0.27 0.00 0.43 0.81 1.15 0.91 0.00 0.00 0.76 0.30 0.30 0.04 0.00 0.47 0.00 1.07 1.01 1.75