Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPRED3 Gene 0 0.52 1.43 2.82 0.71 0.47 0.45 1.35 2.44 1.61 3.47 0.27 0.23 0.00 0.42 0.36 0.52 0.12 25.79 9.94 21.48 28.27 15.70 19.56 2 396877 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 3 338502 Transcript 0 0.07 0.49 0.72 1.10 0.24 0.09 1.00 2.13 1.70 4.18 0.17 0.27 0.00 0.02 0.07 0.10 0.00 20.06 8.02 21.02 23.58 8.24 14.44 4 ER1a ExonRegion 0 0.00 0.00 1.72 0.30 0.00 0.67 0.72 1.49 1.20 3.20 0.70 0.65 0.00 0.24 0.01 0.00 0.60 15.71 9.39 13.08 17.06 12.46 17.14 5 E1a_E2a KnownJunction 0 0.00 0.00 1.60 1.60 0.00 0.00 0.00 1.77 1.79 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.13 35.11 45.19 38.36 44.52 19.04 6 I1 Intron 0 2.52 1.82 3.90 1.01 2.13 1.91 1.12 2.17 1.83 2.80 0.67 0.18 0.00 0.89 0.61 0.15 0.16 8.17 4.75 8.67 7.99 10.45 7.73 7 I1_SR1 SilentIntronRegion 0 2.80 1.43 3.49 1.03 1.69 1.76 1.18 2.00 1.86 1.88 0.75 0.23 0.00 0.71 0.66 0.00 0.21 7.75 5.74 7.20 8.09 9.95 7.55 8 I1_AR1 ActiveIntronRegion 0 1.62 3.15 5.33 0.96 3.64 2.45 0.91 2.80 1.74 5.95 0.42 0.00 0.00 1.52 0.45 0.65 0.00 9.64 1.42 13.74 7.71 12.25 8.39 9 E2_Aa NovelBoundary 0 6.52 3.09 24.75 9.62 7.98 0.00 0.00 2.01 3.15 5.99 2.68 0.00 0.00 2.47 0.00 0.00 0.00 19.32 4.80 12.59 13.22 19.29 11.69 10 ER2a ExonRegion 0 1.79 6.03 15.01 3.49 2.22 1.04 5.19 11.03 5.00 7.70 0.58 0.00 0.00 2.11 1.61 2.60 0.00 91.32 21.41 62.44 74.80 51.42 46.15 11 E2a_E3a KnownJunction 0 3.04 2.63 15.85 3.30 3.74 2.10 0.00 5.79 2.78 4.65 0.00 0.00 0.00 4.89 0.00 0.00 0.00 96.05 43.20 67.94 79.69 78.01 82.63 12 ER3a ExonRegion 0 3.08 0.24 3.36 0.81 2.22 0.14 1.75 3.64 3.21 1.73 0.00 0.00 0.00 1.56 0.49 0.19 0.00 26.90 19.90 31.09 32.17 25.95 18.69 13 E3_Da NovelBoundary 0 3.26 0.00 10.97 0.00 0.00 0.00 5.39 0.00 1.71 1.61 2.68 0.00 0.00 0.00 0.00 0.00 0.00 28.48 4.80 22.69 0.00 5.76 0.00 14 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3a_E5a KnownJunction 0 0.00 0.00 1.36 1.30 0.00 0.00 2.25 4.11 2.92 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.86 13.46 20.77 26.63 5.82 16.73 16 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 17 E4_Da NovelBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.50 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 4.80 5.24 9.45 0.00 13.06 18 ER5a ExonRegion 0 0.00 0.72 0.52 1.50 0.95 0.00 0.94 1.09 1.70 5.15 0.68 1.08 0.00 0.00 0.00 0.00 0.00 25.50 6.19 24.73 30.29 12.39 13.36 19 E5a_E6a KnownJunction 0 0.00 0.00 0.00 1.50 0.00 0.00 0.00 2.22 1.27 5.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.94 4.71 23.78 14.89 5.57 11.01 20 ER6a ExonRegion 0 0.29 1.25 0.99 0.11 0.00 0.37 0.81 1.11 0.90 2.65 0.00 0.00 0.00 0.09 0.28 0.40 0.00 15.95 7.73 14.79 22.52 9.18 16.68 21 IG12 Intergenic 0 5.24 10.93 11.58 4.54 5.35 2.09 5.68 11.25 6.48 8.69 1.07 1.26 0.35 0.66 0.56 0.83 0.35 61.84 46.88 53.53 61.59 61.91 55.35 22 IG12_AR1 ActiveIntergenicRegion 0 2.04 0.65 2.49 1.77 1.11 1.85 1.77 3.93 4.25 9.74 0.18 0.00 0.27 0.52 0.82 0.00 0.00 51.84 18.78 39.00 42.04 27.30 40.25 23 IG12_SR1 SilentIntergenicRegion 0 4.29 5.87 12.68 3.87 6.19 3.43 4.81 14.16 9.91 13.40 1.42 0.76 0.99 2.17 1.29 0.49 0.00 90.25 67.65 79.36 95.30 83.42 78.99 24 IG12_AR2 ActiveIntergenicRegion 0 10.28 26.65 21.62 7.19 9.21 3.03 10.96 17.84 13.57 17.18 1.63 1.80 0.72 0.70 0.98 1.48 0.08 124.89 90.67 96.88 104.58 113.96 96.93 25 IG12_SR2 SilentIntergenicRegion 0 8.44 17.21 17.87 6.09 7.60 2.88 8.43 20.72 9.28 13.79 1.68 2.42 0.41 0.68 0.54 1.02 1.49 90.75 83.03 90.98 101.90 110.54 97.91 26 IG12_AR3 ActiveIntergenicRegion 0 4.50 7.16 10.59 5.97 5.73 2.37 4.81 10.12 3.91 5.41 1.15 1.56 0.18 0.77 0.41 1.11 0.38 43.69 30.77 37.48 51.09 46.12 41.50