Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SAMD4B Gene 0 114.79 164.57 191.84 103.85 89.12 101.74 88.29 160.27 137.92 249.75 160.72 79.17 72.20 173.29 140.56 157.48 135.01 259.88 202.44 146.22 390.34 257.14 211.99 2 314471 Transcript 0 18.43 16.64 26.16 10.30 27.85 23.41 28.60 21.35 14.97 35.92 33.15 21.59 20.76 31.31 22.54 25.38 27.51 43.50 35.02 33.81 68.81 24.42 33.82 3 429637 Transcript 0 3.63 6.39 13.13 5.84 10.32 5.50 7.75 7.16 5.29 18.35 14.08 4.33 4.69 21.11 9.12 8.92 12.73 21.12 14.56 16.11 41.24 9.52 18.04 4 392067 Transcript 1 10.89 41.18 127.88 78.28 24.87 38.33 42.66 77.79 81.83 156.04 76.02 7.35 0.00 13.83 28.68 53.49 53.86 164.11 54.12 55.35 186.75 99.63 93.30 5 ER1a ExonRegion 0 11.36 14.27 3.17 5.75 8.79 11.15 10.65 2.85 9.51 14.29 23.27 2.54 7.49 21.69 31.09 25.09 16.99 5.75 71.77 16.94 96.92 39.85 87.10 6 E1a_E2a KnownJunction 0 5.78 0.00 1.69 0.00 0.00 0.00 0.00 3.70 2.46 2.93 4.84 6.30 6.82 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.76 7.00 7 E1a_E4a NovelJunction 0 0.00 0.00 13.63 1.76 0.00 0.00 1.90 3.33 7.87 16.84 15.74 12.30 6.66 17.36 13.35 8.29 8.60 13.72 8.00 8.37 44.91 19.17 6.91 8 I1 Intron 0 21.07 18.97 19.74 10.68 16.60 13.76 29.47 24.43 20.23 27.22 17.47 30.91 45.53 26.21 17.29 26.24 29.05 54.57 38.36 59.78 27.94 17.57 28.66 9 I1_SR1 SilentIntronRegion 0 9.91 4.54 13.91 4.43 5.97 8.00 13.49 15.11 14.00 21.02 12.52 10.68 19.64 22.07 18.76 19.98 18.92 48.83 28.35 37.68 26.05 9.30 20.94 10 I1_AR1 ActiveIntronRegion 0 18.77 17.67 23.31 7.28 16.99 9.23 25.84 22.77 19.31 20.64 15.06 25.39 36.58 21.88 18.00 28.25 18.78 49.67 41.52 59.22 27.90 18.26 27.96 11 I1_SR2 SilentIntronRegion 0 32.70 29.50 22.88 14.69 13.96 3.97 28.31 32.25 21.94 26.32 15.99 43.43 56.32 25.46 14.20 23.06 19.34 50.28 61.13 81.05 15.34 23.27 27.39 12 I1_AR2 ActiveIntronRegion 0 37.86 40.23 30.76 19.92 25.66 18.29 49.69 43.09 37.84 52.95 24.75 63.75 88.93 35.61 26.02 37.52 33.77 60.69 48.42 91.15 33.32 32.67 40.92 13 I1_SR3 SilentIntronRegion 0 21.35 19.43 18.51 11.71 18.85 17.23 32.54 23.98 19.37 26.74 18.71 32.28 48.11 27.25 15.41 26.22 35.54 57.26 36.73 59.76 29.03 16.98 29.50 14 E2_Aa NovelBoundary 0 42.38 12.76 21.29 21.58 34.38 65.25 66.73 28.51 15.65 32.93 30.22 48.92 8.28 15.48 0.00 28.54 56.47 38.43 34.45 68.39 35.03 19.59 47.12 15 ER2a ExonRegion 1 13.55 5.36 18.58 11.17 24.21 20.17 45.47 11.12 11.93 15.66 28.67 48.30 13.20 24.68 24.60 28.88 21.29 30.52 22.27 52.50 33.10 14.71 23.18 16 E2_Da NovelBoundary 0 48.75 5.85 18.95 33.40 30.14 35.77 42.93 9.45 19.50 28.88 25.37 36.01 19.97 25.84 0.00 47.42 43.48 57.79 25.41 83.80 29.47 23.64 36.96 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.59 0.00 0.00 0.00 0.00 0.00 0.00 3.83 11.36 0.00 0.00 0.00 0.00 0.00 18 E2a_E4a NovelJunction 0 0.00 0.00 12.36 1.50 0.00 2.90 0.00 0.00 4.83 4.46 6.74 12.60 19.32 2.47 14.59 15.21 13.09 7.71 14.40 17.58 20.45 25.29 45.41 19 I2 Intron 0 26.14 33.92 30.29 24.55 37.90 28.96 47.32 28.07 23.15 35.21 21.58 38.32 28.83 25.49 18.79 32.78 30.29 41.68 28.53 62.05 26.44 20.04 22.15 20 I2_SR1 SilentIntronRegion 0 24.94 32.68 33.91 28.14 39.56 27.63 48.71 30.54 24.99 40.16 20.85 42.89 29.53 24.23 19.89 35.03 30.66 42.01 29.58 67.78 24.23 21.28 22.43 21 I2_AR1 ActiveIntronRegion 0 28.08 35.92 24.44 18.75 35.21 31.11 45.07 24.08 20.18 27.22 22.75 30.92 27.69 27.53 17.01 29.15 29.70 41.14 26.83 52.79 30.01 18.03 21.70 22 E3_Aa NovelBoundary 1 70.75 76.63 79.33 58.90 80.90 43.44 74.72 71.84 59.66 75.99 49.28 84.03 59.09 57.74 33.13 57.08 21.04 171.00 59.39 86.35 46.77 45.13 34.40 23 ER3a ExonRegion 1 87.38 57.52 54.54 34.32 89.77 62.30 80.13 61.88 33.42 59.24 40.20 59.99 62.50 41.44 26.41 56.70 38.48 88.61 49.88 77.90 40.29 25.36 41.93 24 E3_Da NovelBoundary 0 17.93 43.94 70.84 56.77 73.68 32.48 62.80 72.87 46.21 74.78 32.53 20.26 34.09 34.79 9.02 39.56 38.24 17.04 49.88 91.15 26.19 21.55 18.44 25 E3a_E4a KnownJunction 0 0.00 0.00 17.62 1.40 0.00 10.85 9.94 4.15 2.26 18.10 0.00 0.00 0.00 3.00 0.00 4.02 0.00 26.28 4.80 14.13 0.00 0.00 0.00 26 I3 Intron 0 41.53 35.09 21.75 17.37 39.43 30.94 44.78 27.33 17.84 27.01 18.15 31.27 31.30 23.55 18.38 34.72 22.69 34.38 29.43 45.48 16.81 24.34 23.54 27 I3_SR1 SilentIntronRegion 0 41.53 35.09 21.75 17.37 39.42 30.94 44.78 27.33 17.84 27.01 18.15 31.27 31.30 23.55 18.38 34.72 22.69 34.38 29.42 45.48 16.81 24.34 23.54 28 E4_Aa NovelBoundary 0 71.27 73.54 68.48 46.75 39.05 62.75 83.60 52.70 25.64 89.69 36.59 46.07 27.27 49.80 52.78 44.77 35.72 124.82 25.79 83.28 37.81 43.41 24.67 29 ER4a ExonRegion 0 11.69 18.67 34.87 8.36 48.43 34.45 38.11 22.55 16.70 60.35 53.55 43.01 30.14 54.47 40.00 37.76 54.11 64.34 56.76 51.90 144.65 44.13 34.04 30 E4_Da NovelBoundary 0 42.97 81.17 41.04 33.43 117.40 34.53 62.93 39.76 27.69 14.80 15.85 38.11 33.11 7.00 27.44 45.54 34.97 31.42 44.90 55.03 32.31 33.80 36.36 31 E4a_E5b KnownJunction 1 17.71 37.30 78.77 21.44 51.61 48.38 44.47 64.53 43.52 111.24 114.66 12.60 45.94 102.18 58.22 50.59 85.37 121.17 74.64 57.14 235.50 65.58 77.34 32 I4 Intron 0 19.29 23.41 29.43 21.76 18.57 9.56 18.50 18.20 19.83 18.09 11.80 10.56 15.48 10.28 13.57 21.10 18.26 49.23 26.48 28.30 29.87 10.06 24.88 33 I4_SR1 SilentIntronRegion 0 20.79 21.38 27.83 16.89 18.43 10.06 20.84 17.80 15.54 14.86 11.76 10.67 12.90 10.31 11.74 19.89 18.47 44.47 24.25 25.57 29.29 9.49 20.55 34 I4_AR1 ActiveIntronRegion 0 20.64 29.51 27.80 34.18 22.15 9.39 16.78 20.91 25.37 24.92 10.31 11.35 20.88 11.64 14.51 25.49 16.55 56.48 29.46 33.49 33.42 12.58 27.26 35 I4_SR2 SilentIntronRegion 0 11.08 22.74 38.64 23.32 13.78 7.78 11.46 15.87 29.41 21.28 14.28 8.97 18.13 8.13 19.84 19.56 20.04 58.29 31.36 31.93 27.01 8.67 39.41 36 ER5a ExonRegion 0 3.63 6.39 13.13 5.84 10.32 5.50 7.75 7.16 5.29 18.35 14.08 4.33 4.69 21.11 9.12 8.92 12.73 21.12 14.56 16.11 41.24 9.52 18.04 37 ER5b ExonRegion 0 41.15 43.66 87.22 46.30 33.43 50.42 52.05 79.12 74.40 145.11 102.75 39.58 42.76 125.40 105.39 103.89 93.62 170.98 153.52 120.08 299.44 149.79 151.20 38 E5_Ac KnownBoundary 1 62.97 47.03 87.84 66.56 64.60 84.78 105.99 89.95 65.45 176.86 141.88 12.00 38.63 158.40 122.63 120.82 96.12 206.06 109.37 128.98 341.26 106.49 178.15 39 ER5c ExonRegion 1 62.59 54.10 138.97 58.70 42.94 70.33 63.71 113.65 103.39 216.71 183.85 23.31 32.90 188.72 127.51 150.77 125.59 289.62 156.10 160.63 433.22 201.27 193.10 40 E5a_E6a KnownJunction 1 42.01 51.83 170.07 83.07 42.36 55.08 38.02 142.28 134.95 256.10 173.20 12.00 34.58 125.02 159.71 152.10 127.26 358.49 203.11 173.79 445.11 174.09 152.97 41 I5 Intron 0 18.50 18.45 20.79 24.52 13.32 8.55 14.32 13.90 13.80 16.30 5.98 10.99 8.13 5.40 8.65 13.95 11.43 30.52 22.54 23.64 20.01 9.11 17.35 42 I5_SR1 SilentIntronRegion 0 14.11 20.18 32.41 24.79 13.09 9.18 13.56 13.46 14.27 11.41 9.46 8.13 9.74 5.99 8.76 14.12 12.72 31.60 23.86 25.87 17.63 7.45 18.40 43 I5_AR1 ActiveIntronRegion 0 47.84 33.06 32.21 40.51 12.77 7.84 15.47 10.27 20.29 23.80 9.22 13.18 13.78 6.78 10.19 12.45 14.00 32.89 22.02 29.42 16.12 10.92 20.38 44 I5_SR2 SilentIntronRegion 0 23.35 18.76 19.92 20.87 13.86 8.96 15.17 14.97 12.79 18.50 5.53 11.37 6.93 4.79 10.46 17.77 10.56 30.30 27.50 20.52 22.73 10.97 14.35 45 I5_AR8 ActiveIntronRegion 0 18.24 18.68 27.71 26.08 16.02 8.74 13.89 17.01 15.69 20.92 4.75 7.10 2.49 5.33 7.35 13.25 16.23 39.06 21.74 32.01 26.27 10.29 23.39 46 I5_SR3 SilentIntronRegion 0 18.04 17.57 17.55 28.60 9.26 11.32 16.51 19.35 14.91 18.83 4.89 11.04 5.15 6.66 8.55 19.48 7.08 45.05 20.44 33.35 28.36 12.50 19.90 47 I5_AR9 ActiveIntronRegion 0 21.64 19.66 17.78 29.08 14.16 8.36 17.19 15.89 17.86 19.52 6.18 15.22 14.50 6.30 9.80 17.19 14.78 42.13 28.11 27.18 25.57 11.34 19.07 48 I5 Intron 0 17.32 24.96 22.41 29.36 16.05 9.00 14.44 7.02 13.05 20.51 4.74 7.22 1.05 7.19 7.73 6.48 6.30 15.54 20.85 15.67 16.22 9.66 8.81 49 I5_SR1 SilentIntronRegion 0 11.43 25.69 26.74 35.31 24.05 10.94 20.90 7.91 11.99 19.55 5.55 1.63 2.32 8.50 9.45 9.79 6.17 18.74 21.66 24.56 9.39 8.78 7.26 50 I5_AR1 ActiveIntronRegion 0 22.44 24.58 18.99 24.64 9.48 7.46 9.15 6.35 14.08 21.52 4.11 12.00 0.00 6.16 6.35 3.77 6.47 13.01 20.37 8.34 22.12 10.50 10.21 51 E6_Aa NovelBoundary 0 15.04 65.38 34.50 50.21 8.23 17.21 15.63 13.06 18.00 33.20 7.48 6.30 6.82 7.95 0.00 23.84 13.00 38.22 13.18 23.52 11.37 16.84 20.32 52 ER6a ExonRegion 0 63.13 62.95 167.32 83.05 48.78 86.19 72.76 154.96 154.30 245.69 182.38 49.94 43.11 201.39 137.22 175.72 143.51 330.42 215.62 183.46 485.05 274.68 214.90 53 E6a_E7a KnownJunction 0 255.30 161.22 255.82 120.53 150.42 265.59 202.66 241.27 242.30 387.11 208.84 145.25 71.91 322.45 182.21 279.50 221.69 486.58 513.71 216.93 638.84 407.02 403.94 54 I6_AR1 ActiveIntronRegion 0 23.48 10.55 11.31 14.34 15.42 7.40 22.51 11.51 6.36 9.11 2.78 5.25 9.94 5.56 7.67 7.71 9.04 10.06 10.10 11.65 13.02 3.60 11.85 55 ER7a ExonRegion 0 71.95 82.49 194.14 94.01 78.59 115.15 84.44 196.79 185.40 310.98 214.56 68.66 61.77 231.82 141.51 181.78 162.58 398.44 250.83 162.47 561.53 303.93 256.87 56 E7a_E8a KnownJunction 0 43.79 87.22 296.86 126.89 95.42 171.32 84.97 237.45 252.05 403.49 297.13 95.73 87.17 288.60 176.03 233.78 281.91 463.45 305.80 186.00 709.76 319.09 251.99 57 ER8a ExonRegion 0 49.93 88.81 229.01 129.24 73.66 126.10 71.29 204.04 214.29 366.62 257.53 106.31 127.70 275.89 211.00 312.18 224.97 644.14 356.64 222.34 671.07 421.61 401.23 58 E8a_E9a KnownJunction 0 89.35 94.65 252.74 146.37 51.78 70.02 64.43 218.72 201.16 387.48 255.43 92.58 65.90 286.36 276.78 360.16 187.84 658.57 420.81 236.43 479.52 628.32 546.67 59 ER9a ExonRegion 0 53.91 81.32 245.82 114.89 70.80 123.05 69.99 222.81 202.50 372.64 339.70 114.41 89.97 252.58 179.91 220.72 224.88 495.75 280.39 206.41 713.82 395.29 289.14 60 E9a_E10a KnownJunction 0 48.30 106.89 326.57 165.71 100.17 112.83 79.49 279.55 211.40 404.33 279.54 80.73 107.46 312.56 218.68 222.33 242.45 568.33 324.34 233.75 671.33 363.79 295.95 61 ER10a ExonRegion 0 52.61 81.39 248.13 104.74 77.49 114.15 73.91 194.10 190.66 343.89 191.51 75.84 108.93 215.23 175.15 178.67 196.48 385.23 239.30 170.85 502.21 319.02 249.16 62 E10a_E11a KnownJunction 0 87.50 106.30 366.28 138.84 96.43 124.08 95.04 256.63 269.62 460.20 300.81 110.59 121.58 254.70 201.50 254.63 308.56 437.66 275.02 255.16 672.26 316.76 295.95 63 ER11a ExonRegion 0 71.17 86.19 269.57 122.87 63.84 125.91 83.46 226.01 220.70 375.78 266.34 86.29 114.03 209.83 205.72 199.58 211.60 353.54 213.42 189.01 635.72 308.17 233.05 64 E11a_E12a KnownJunction 0 66.09 107.81 266.49 129.95 88.96 137.42 85.68 212.02 238.68 363.31 230.37 81.63 100.97 210.73 238.46 175.34 186.16 392.02 187.58 209.01 475.25 268.02 270.86 65 ER12a ExonRegion 0 61.36 100.62 287.58 146.87 83.17 115.28 72.21 238.70 218.14 403.19 233.07 127.34 132.90 226.07 195.53 220.36 220.97 356.21 245.06 205.72 576.50 294.56 254.70 66 E12a_E13a KnownJunction 1 47.34 124.32 235.15 127.02 87.01 124.30 63.73 192.19 180.41 349.50 216.00 55.37 141.06 196.30 238.21 190.38 162.60 295.56 199.35 163.88 495.76 285.29 153.82 67 ER13a ExonRegion 0 43.29 69.29 183.98 112.09 52.44 90.59 53.84 163.87 144.54 273.84 167.16 82.64 85.23 166.77 143.29 158.98 134.59 274.65 163.96 134.09 416.29 204.30 198.84 68 E13_Da NovelBoundary 0 45.86 111.56 205.05 124.26 54.92 112.44 100.16 152.14 139.90 261.10 178.10 97.83 94.47 195.89 181.35 110.91 132.30 294.24 143.06 144.71 402.66 226.38 197.44 69 E13a_E13b KnownJunction 1 10.89 41.18 127.88 78.28 24.87 38.33 42.66 77.79 81.83 156.04 76.02 7.35 0.00 13.83 28.68 53.49 53.86 164.11 54.12 55.35 186.75 99.63 93.30 70 E13b_E14a KnownJunction 0 43.42 75.84 205.26 86.44 68.93 84.10 90.80 166.23 143.14 233.22 115.45 93.48 93.66 164.81 157.49 182.35 138.20 391.44 214.88 170.79 344.47 251.12 266.25 71 ER13b ExonRegion 0 39.51 94.90 205.86 115.85 42.81 98.41 74.14 138.28 157.68 256.14 175.25 111.12 89.11 188.40 176.01 133.75 114.43 319.04 172.01 153.90 400.34 222.94 233.95 72 ER13c ExonRegion 0 32.30 79.76 205.77 101.56 48.96 79.33 75.86 154.15 146.93 259.67 146.11 89.48 100.92 191.04 162.90 127.25 122.99 337.66 165.76 143.50 351.37 224.02 227.86 73 ER14a ExonRegion 0 57.85 83.85 256.65 123.36 74.45 99.08 73.75 192.74 169.22 311.66 191.43 58.66 87.52 190.99 180.88 153.81 183.04 368.09 198.57 162.37 469.07 248.80 245.19 74 E14a_E15a KnownJunction 0 90.31 124.65 226.34 108.54 70.97 86.09 74.63 171.48 150.55 281.76 152.72 81.03 86.20 188.24 174.05 180.12 199.81 330.38 175.63 158.39 450.73 201.46 310.38 75 ER15a ExonRegion 0 71.77 85.78 218.23 105.81 55.10 82.94 65.54 177.32 143.67 269.42 158.59 64.15 69.28 199.03 154.43 190.22 188.60 327.30 212.55 151.84 461.38 217.25 288.99 76 ER15b ExonRegion 0 56.46 84.46 222.72 121.98 44.45 111.54 59.34 162.34 127.71 241.79 174.27 50.91 57.57 213.07 131.02 162.27 162.81 254.57 264.54 100.82 447.42 239.00 273.58 77 E15_Db NovelBoundary 0 62.83 27.76 181.28 39.76 65.96 55.08 29.72 118.75 92.22 155.18 142.88 31.51 41.23 136.74 114.72 135.86 128.56 344.60 246.88 176.79 245.07 287.98 256.00 78 E15b_E16a KnownJunction 0 46.08 101.03 188.70 122.83 35.99 145.65 83.11 137.76 105.21 214.41 119.14 56.27 64.28 158.57 129.55 99.12 166.62 172.65 179.68 77.34 318.59 213.09 169.79 79 I15 Intron 1 9.91 16.03 53.99 23.52 14.50 22.14 18.59 39.35 39.45 64.43 54.77 13.18 21.00 59.15 52.22 52.72 43.10 106.36 56.51 57.14 126.50 71.88 73.08 80 I15_AR1 ActiveIntronRegion 1 10.00 16.19 54.50 23.74 14.64 22.35 18.77 39.72 39.82 65.04 55.30 13.31 21.21 59.72 52.72 53.21 43.52 107.39 57.06 57.70 127.72 72.57 73.79 81 E16_Aa NovelBoundary 0 18.74 14.80 46.04 20.04 33.19 32.82 21.51 32.37 28.59 44.78 37.22 5.25 12.66 38.61 33.38 50.50 48.15 38.59 79.81 45.19 75.31 77.64 35.51 82 ER16a ExonRegion 0 239.11 386.30 272.60 162.89 148.45 141.78 132.98 213.64 167.06 312.37 180.62 116.85 84.00 206.62 186.85 192.72 149.31 232.64 267.49 160.26 424.13 370.85 275.70 83 IG39 Intergenic 0 131.39 169.54 241.69 104.16 92.96 89.04 60.47 143.59 102.88 200.15 115.82 76.26 79.60 144.41 190.19 142.39 93.55 205.70 179.19 111.12 329.31 228.71 217.99 84 IG39_AR1 ActiveIntergenicRegion 0 131.58 169.78 242.03 104.31 93.10 89.16 60.56 143.79 103.03 200.43 115.98 76.37 79.70 144.61 190.46 142.58 93.68 205.99 179.44 111.27 329.77 229.03 218.30