Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GEMIN7 Gene 0 66.11 28.63 65.62 37.34 37.76 27.40 24.46 48.94 45.94 58.69 135.78 48.98 32.02 133.39 202.91 128.92 110.30 58.73 82.94 59.39 55.54 30.30 40.08 2 414125 Transcript 1 8.63 1.41 1.23 0.00 1.03 1.69 3.67 1.33 0.95 2.03 11.45 0.00 0.00 5.50 30.80 18.29 9.14 0.43 4.66 1.80 9.15 4.81 2.71 3 270257 Transcript 0 0.00 0.00 14.99 18.58 7.39 0.00 0.00 12.45 7.75 8.19 13.11 6.15 0.00 4.77 13.35 7.86 7.95 15.84 29.37 5.62 2.29 3.06 3.59 4 391951 Transcript 0 6.82 3.35 26.73 2.90 7.56 7.04 9.98 16.63 13.72 10.50 2.05 0.00 6.66 4.94 23.98 7.86 15.24 13.22 22.49 5.75 2.41 2.33 4.35 5 IG4 Intergenic 0 12.61 5.29 5.47 3.20 9.08 6.22 3.81 7.92 15.83 8.56 13.95 10.31 10.69 30.09 31.43 31.88 16.67 4.78 9.17 9.06 2.87 1.15 2.66 6 IG4_AR1 ActiveIntergenicRegion 0 4.84 5.97 1.94 2.06 1.26 4.89 2.81 4.07 11.43 8.75 9.17 2.79 3.47 22.37 26.67 29.89 15.77 2.34 2.84 2.51 3.30 0.70 4.77 7 IG4_SR1 SilentIntergenicRegion 0 13.72 5.21 5.98 3.37 10.18 6.42 3.96 8.48 16.48 8.56 14.65 11.38 11.71 31.23 32.17 32.24 16.83 5.13 10.07 10.00 2.81 1.22 2.38 8 ER1a ExonRegion 0 8.63 1.41 1.23 0.00 1.03 1.69 3.67 1.33 0.95 2.03 11.45 0.00 0.00 5.50 30.80 18.29 9.14 0.43 4.66 1.80 9.15 4.81 2.71 9 ER1b ExonRegion 1 31.45 9.59 8.75 6.23 11.85 16.24 14.94 5.93 3.18 10.16 35.62 0.00 0.00 33.64 92.01 59.87 44.33 16.89 27.30 10.33 34.63 10.12 26.85 10 ER1c ExonRegion 1 46.09 45.67 52.38 31.25 30.58 34.64 38.58 36.05 36.68 44.46 82.50 0.44 8.61 77.54 147.08 176.84 86.90 94.24 145.84 52.71 42.03 23.68 78.66 11 E1b_E2a KnownJunction 0 0.00 0.00 14.99 18.58 7.39 0.00 0.00 12.45 7.75 8.19 13.11 6.15 0.00 4.77 13.35 7.86 7.95 15.84 29.37 5.62 2.29 3.06 3.59 12 E1b_E3a KnownJunction 0 6.82 3.35 26.73 2.90 7.56 7.04 9.98 16.63 13.72 10.50 2.05 0.00 6.66 4.94 23.98 7.86 15.24 13.22 22.49 5.75 2.41 2.33 4.35 13 I1 Intron 0 31.39 12.81 20.04 11.76 14.95 9.69 7.80 23.03 27.11 27.26 16.89 8.26 6.05 30.30 44.44 50.73 22.13 17.55 25.23 28.97 8.95 6.56 11.93 14 I1_AR1 ActiveIntronRegion 0 31.52 12.86 20.12 11.81 15.01 9.73 7.83 23.12 27.22 27.37 16.96 8.30 6.08 30.42 44.62 50.93 22.22 17.62 25.33 29.09 8.98 6.59 11.98 15 E2_Aa NovelBoundary 0 48.23 29.34 61.97 25.07 52.38 2.90 5.43 52.49 76.50 58.40 24.59 17.41 6.66 49.39 77.01 52.12 69.28 28.60 57.98 40.01 13.22 5.63 23.73 16 ER2a ExonRegion 0 75.06 36.77 36.23 25.03 33.74 17.74 14.20 34.96 34.83 44.54 123.19 22.53 17.73 79.46 137.59 104.70 117.54 40.61 60.19 59.40 51.96 19.99 34.71 17 E2_Da NovelBoundary 0 26.38 35.45 56.92 20.71 28.61 13.17 16.21 55.70 53.96 36.21 11.21 0.00 13.31 16.60 34.37 73.06 34.41 29.18 54.68 34.32 8.83 10.65 47.46 18 E2a_E3a KnownJunction 0 59.20 6.58 58.51 43.32 20.29 8.46 6.32 35.78 20.05 41.26 104.71 19.81 13.47 139.68 201.00 184.14 90.79 43.40 83.39 24.03 54.49 40.78 78.53 19 I2 Intron 0 11.39 15.47 18.87 9.45 18.21 9.18 8.81 15.79 17.36 13.60 6.43 11.43 11.95 11.40 23.59 22.39 15.28 16.62 24.55 34.29 4.74 4.95 13.23 20 I2_AR1 ActiveIntronRegion 0 17.31 20.56 29.58 21.13 25.86 9.54 12.98 36.73 37.21 25.66 11.78 10.94 10.95 15.41 40.71 30.93 19.63 34.92 36.93 59.44 7.54 5.88 18.76 21 I2_SR2 SilentIntronRegion 0 7.18 12.28 11.19 6.99 17.84 9.35 7.59 11.54 11.97 8.14 3.54 12.03 10.28 11.11 17.78 19.93 12.51 8.41 20.80 23.03 2.85 3.50 11.20 22 I2_SR3 SilentIntronRegion 0 14.15 17.71 24.22 7.99 15.74 9.24 9.13 13.82 16.57 15.10 7.87 11.62 15.34 10.64 23.72 22.72 18.91 17.76 26.32 37.69 5.74 6.70 14.73 23 I2_AR4 ActiveIntronRegion 1 13.90 11.65 15.23 7.51 9.18 5.60 9.41 2.85 7.54 5.67 6.48 0.00 3.17 8.74 24.78 32.21 4.37 16.83 16.96 40.60 5.78 1.52 8.25 24 E3_Aa NovelBoundary 0 24.75 25.26 33.50 12.42 20.37 5.62 10.55 25.14 37.07 34.25 7.26 6.60 0.00 2.47 37.70 8.37 18.51 13.22 18.54 72.35 9.14 6.00 3.59 25 ER3a ExonRegion 0 67.41 27.09 69.96 39.32 39.07 28.03 24.61 51.69 48.17 61.66 142.19 55.32 35.32 143.59 214.56 129.07 112.55 58.59 81.56 60.62 57.31 31.98 38.29 26 IG5 Intergenic 0 2.74 4.65 8.01 6.40 6.44 5.21 6.46 4.61 5.23 6.33 3.58 3.37 4.26 6.90 12.04 8.26 4.48 7.03 5.31 13.66 2.58 1.42 2.36 27 IG5_AR1 ActiveIntergenicRegion 0 5.21 3.13 0.54 3.87 7.56 9.56 6.79 0.86 4.55 0.57 0.60 3.36 2.46 2.54 6.64 4.09 2.10 8.29 16.25 15.69 5.15 0.00 5.62 28 IG5_SR1 SilentIntergenicRegion 0 3.43 3.86 5.51 7.30 4.98 4.58 2.77 4.61 4.94 4.26 3.59 1.49 2.37 7.57 11.40 7.21 2.91 5.68 3.89 9.59 4.50 2.25 2.42 29 IG5_AR2 ActiveIntergenicRegion 0 3.31 7.54 13.68 9.72 9.91 7.25 11.10 7.50 7.73 11.37 5.48 5.94 7.87 10.12 18.12 13.89 8.11 10.74 6.46 19.68 2.10 2.05 2.86