Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PAK4 Gene 0 19.91 32.97 107.40 38.07 23.03 31.91 20.77 67.52 60.49 154.59 67.83 16.52 15.91 79.50 98.50 51.52 48.68 137.76 103.01 53.42 112.95 64.12 55.11 2 321944 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 358301 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 360442 Transcript 0 0.94 0.01 0.61 0.45 0.00 0.00 0.44 0.57 2.47 2.28 1.71 0.40 0.00 0.13 1.16 0.99 0.73 3.48 2.12 0.24 0.24 0.23 0.65 5 435673 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 457838 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 1 3.08 2.96 33.59 3.33 2.92 11.36 3.38 17.57 20.82 50.56 12.87 2.60 4.79 6.81 34.75 12.59 9.62 21.95 31.88 13.01 23.72 5.94 17.93 8 E1a_E3b KnownJunction 0 0.00 0.00 12.63 2.06 0.00 0.00 0.00 2.01 6.48 17.16 0.00 0.00 6.82 0.00 0.00 4.27 0.00 16.71 4.71 9.14 8.71 2.57 3.59 9 I1_AR4 ActiveIntronRegion 0 3.70 7.25 13.62 3.53 12.99 2.75 4.19 14.22 10.46 16.27 2.29 8.98 2.68 2.60 6.35 6.09 5.88 21.43 10.98 21.31 1.78 4.17 9.51 10 I1_AR5 ActiveIntronRegion 0 8.88 8.34 21.06 8.08 12.15 1.60 5.37 22.23 15.97 13.61 2.25 8.34 5.25 3.71 7.83 8.98 10.71 32.76 12.67 21.62 2.70 3.24 8.00 11 I1_AR6 ActiveIntronRegion 0 9.58 8.09 11.91 4.60 4.99 2.53 3.49 15.51 8.33 12.30 1.99 2.60 2.25 1.30 10.69 4.66 5.01 21.13 9.35 11.43 6.59 2.93 8.86 12 I1_SR5 SilentIntronRegion 0 7.89 3.00 14.77 7.48 3.62 0.84 2.44 20.20 11.88 18.16 0.83 1.08 3.18 3.45 10.57 6.26 6.37 43.05 11.15 19.52 9.43 3.35 4.34 13 ER2a ExonRegion 0 1.88 0.02 1.21 0.90 0.00 0.00 0.88 1.14 3.59 4.56 0.74 0.79 0.00 0.26 2.32 1.98 1.46 5.02 4.24 0.47 0.49 0.46 1.30 14 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 15 ER3a ExonRegion 0 0.00 0.51 4.90 1.70 0.00 0.00 0.00 2.59 8.65 16.06 4.35 0.00 1.17 17.05 14.51 3.72 0.00 18.94 13.54 4.26 6.06 10.42 8.81 16 ER3b ExonRegion 0 3.42 16.17 64.47 11.63 15.29 36.96 15.69 42.68 48.74 98.04 43.09 12.93 12.07 66.52 76.84 52.96 40.58 138.96 120.90 48.29 96.61 53.32 54.27 17 E3_Da NovelBoundary 0 10.82 3.09 1.83 0.00 0.00 0.00 0.00 2.42 1.79 8.68 0.00 0.00 0.00 2.47 0.00 4.02 7.85 16.54 8.66 6.33 16.74 0.00 0.00 18 E3a_E4a KnownJunction 0 20.67 32.56 32.29 9.26 4.33 47.70 10.73 22.80 7.99 65.11 43.48 5.70 13.64 67.16 51.55 23.58 29.36 106.08 47.15 30.42 85.75 26.33 11.18 19 E3a_E5a KnownJunction 0 3.26 0.00 12.71 1.90 7.22 2.38 0.00 38.57 27.57 12.60 5.32 0.00 0.00 2.47 0.00 0.00 0.00 4.19 0.00 8.44 14.27 2.63 3.59 20 ER4a ExonRegion 0 7.45 16.60 53.36 12.42 7.78 20.48 9.79 19.20 12.11 87.90 42.65 5.35 8.33 67.29 76.30 30.12 36.85 99.97 63.46 29.38 77.44 35.26 29.16 21 E4a_E5a KnownJunction 1 10.74 18.88 52.93 9.09 3.99 29.07 14.00 27.27 9.98 111.15 64.02 0.00 6.82 57.45 62.55 28.28 30.67 61.02 39.15 28.51 70.36 29.33 35.51 22 ER5a ExonRegion 0 10.19 24.03 74.44 20.95 12.34 22.35 15.62 50.78 41.32 132.13 55.62 9.75 10.31 75.65 78.05 34.37 51.44 96.67 66.11 49.40 97.68 45.73 47.88 23 E5a_E6a KnownJunction 0 27.19 40.72 185.92 80.78 49.07 42.76 23.98 132.38 102.43 257.61 105.55 31.21 6.82 130.73 149.08 70.24 102.10 184.51 108.71 102.97 173.22 103.18 115.41 24 ER6a ExonRegion 0 27.01 61.46 197.19 69.41 32.59 41.63 28.67 113.29 122.05 274.26 126.88 16.93 19.99 124.66 158.85 81.78 85.08 248.56 119.97 104.99 191.33 99.25 92.35 25 E6a_E7a KnownJunction 1 37.71 49.20 210.84 78.25 25.21 27.03 31.49 105.81 119.33 312.38 147.20 0.00 8.12 112.60 176.03 96.30 114.73 257.59 134.12 107.06 181.07 127.49 76.91 26 ER7a ExonRegion 0 49.65 45.99 223.16 88.08 28.53 42.47 30.11 143.57 150.85 319.10 118.97 17.90 27.14 141.54 182.12 85.79 83.80 225.05 165.51 123.67 168.30 148.83 110.48 27 E7a_E8a KnownJunction 0 83.79 62.29 304.81 89.53 58.74 85.24 46.06 203.15 173.70 398.20 148.88 31.96 35.55 166.64 200.01 97.50 80.32 327.85 272.48 108.28 255.63 196.38 90.66 28 E8_Aa NovelBoundary 0 3.33 6.18 5.14 8.46 3.40 2.67 2.25 8.46 6.45 16.41 5.05 0.00 0.00 0.00 8.90 7.01 3.74 15.88 0.00 0.00 5.68 3.00 24.16 29 ER8a ExonRegion 0 34.23 59.73 238.67 90.50 55.68 68.77 47.11 150.09 148.53 330.42 153.36 37.01 26.69 122.99 146.97 103.76 92.63 301.71 169.00 118.83 236.74 139.30 105.46 30 E8a_E9a KnownJunction 0 13.93 25.46 234.44 81.41 70.46 77.23 69.20 179.25 158.97 350.12 95.23 50.42 29.06 101.60 127.94 65.79 88.45 387.96 136.95 77.53 231.36 93.01 108.16 31 ER9a ExonRegion 0 41.33 78.62 256.89 94.79 51.61 73.27 37.41 159.15 153.90 311.71 125.60 33.80 42.70 144.10 187.10 114.66 86.04 405.48 245.04 113.57 224.94 168.07 135.83 32 E9a_E10a KnownJunction 0 27.93 23.55 289.61 83.64 38.71 41.23 49.29 135.75 150.14 340.61 108.82 37.36 40.26 199.42 300.64 96.04 103.04 303.15 240.20 115.37 222.40 140.90 106.02 33 ER10a ExonRegion 0 30.92 45.26 128.26 52.24 34.88 37.75 28.60 86.85 69.25 177.40 80.89 26.04 21.12 90.41 117.40 62.18 51.39 137.19 128.97 53.20 130.40 71.96 58.91