Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM98C Gene 0 31.07 18.95 45.36 33.55 15.84 23.47 12.18 29.06 36.96 24.41 48.63 14.09 15.18 50.71 48.60 34.95 32.74 43.73 20.90 28.00 55.68 15.08 23.61 2 343358 Transcript 0 1.63 0.00 0.92 0.00 2.04 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 3.74 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 2.09 3 252530 Transcript 0 32.18 18.90 56.40 48.52 22.61 19.36 16.08 35.01 51.77 26.32 59.58 13.62 18.37 73.35 65.78 42.48 39.47 54.72 21.59 38.06 77.78 18.17 28.58 4 IG12 Intergenic 0 5.24 10.93 11.58 4.54 5.35 2.09 5.68 11.25 6.48 8.69 1.07 1.26 0.35 0.66 0.56 0.83 0.35 61.84 46.88 53.53 61.59 61.91 55.35 5 IG12_AR1 ActiveIntergenicRegion 0 2.04 0.65 2.49 1.77 1.11 1.85 1.77 3.93 4.25 9.74 0.18 0.00 0.27 0.52 0.82 0.00 0.00 51.84 18.78 39.00 42.04 27.30 40.25 6 IG12_SR1 SilentIntergenicRegion 0 4.29 5.87 12.68 3.87 6.19 3.43 4.81 14.16 9.91 13.40 1.42 0.76 0.99 2.17 1.29 0.49 0.00 90.25 67.65 79.36 95.30 83.42 78.99 7 IG12_AR2 ActiveIntergenicRegion 0 10.28 26.65 21.62 7.19 9.21 3.03 10.96 17.84 13.57 17.18 1.63 1.80 0.72 0.70 0.98 1.48 0.08 124.89 90.67 96.88 104.58 113.96 96.93 8 IG12_SR2 SilentIntergenicRegion 0 8.44 17.21 17.87 6.09 7.60 2.88 8.43 20.72 9.28 13.79 1.68 2.42 0.41 0.68 0.54 1.02 1.49 90.75 83.03 90.98 101.90 110.54 97.91 9 IG12_AR3 ActiveIntergenicRegion 0 4.50 7.16 10.59 5.97 5.73 2.37 4.81 10.12 3.91 5.41 1.15 1.56 0.18 0.77 0.41 1.11 0.38 43.69 30.77 37.48 51.09 46.12 41.50 10 ER1a ExonRegion 0 19.73 2.69 10.07 6.93 3.44 13.47 9.43 4.07 2.91 1.58 14.52 0.00 4.30 25.66 18.44 12.99 13.83 10.95 4.93 4.61 26.29 3.27 7.97 11 E1a_E2a KnownJunction 0 39.27 6.64 17.12 13.25 11.71 12.49 6.40 15.98 7.70 2.85 23.85 0.00 6.01 14.13 9.39 14.78 9.26 38.26 12.99 6.26 40.83 5.63 19.72 12 I1 Intron 0 11.79 2.61 8.61 3.48 5.73 7.86 1.13 3.31 5.52 5.13 3.31 0.00 0.00 2.29 3.88 1.27 0.00 29.14 6.83 6.38 1.89 0.89 2.52 13 I1_AR1 ActiveIntronRegion 0 11.99 2.66 8.76 3.54 5.83 7.99 1.15 3.37 5.62 5.21 3.37 0.00 0.00 2.33 3.94 1.30 0.00 29.64 6.94 6.49 1.92 0.91 2.54 14 E2_Aa NovelBoundary 0 0.00 0.00 13.87 1.56 0.00 0.00 0.00 1.85 10.47 0.00 10.63 6.15 0.00 0.00 0.00 0.00 0.00 6.47 8.85 3.26 17.11 2.57 3.59 15 ER2a ExonRegion 1 8.51 4.01 16.51 7.54 5.93 7.90 2.43 12.01 17.19 12.56 35.06 3.46 2.14 23.90 26.19 7.78 31.83 34.43 13.40 15.06 38.66 8.82 17.58 16 E2a_E3a KnownJunction 0 0.00 6.71 38.14 21.01 4.33 8.29 2.25 32.86 39.67 23.53 51.86 6.15 6.82 93.83 70.34 27.17 33.94 86.31 36.99 23.65 41.39 20.70 14.94 17 ER3a ExonRegion 0 4.11 10.89 26.61 7.83 8.54 20.92 6.79 13.64 23.84 20.12 42.52 8.37 12.02 31.40 46.63 25.49 26.95 38.32 10.85 11.44 37.19 13.10 21.69 18 E3a_E4a KnownJunction 0 16.45 29.27 47.40 30.50 35.23 66.67 11.48 35.36 49.42 41.96 74.07 5.55 26.30 43.09 37.46 19.48 53.11 68.81 3.58 14.83 43.24 18.80 24.93 19 E4_Aa NovelBoundary 0 28.82 11.31 18.18 11.15 3.31 2.78 2.25 21.19 7.18 2.39 7.95 0.00 0.00 4.71 0.00 4.19 8.42 15.30 0.00 0.00 6.18 2.63 8.19 20 ER4a ExonRegion 0 38.67 21.14 66.63 44.25 17.60 24.25 14.04 41.21 49.73 42.11 63.38 10.34 15.55 57.20 60.72 50.92 42.90 69.06 20.66 24.26 71.64 15.42 24.45 21 E4_Da NovelBoundary 0 24.30 10.00 36.07 20.84 0.00 0.00 0.00 10.72 3.85 0.00 5.37 5.85 0.00 9.77 4.45 15.81 0.00 29.35 17.98 5.75 8.46 3.12 4.01 22 E4a_E5a KnownJunction 1 31.41 13.16 50.18 33.03 29.29 12.78 15.68 22.51 55.29 26.03 66.91 0.00 26.13 64.81 62.67 47.42 49.28 66.16 16.66 30.17 72.16 19.84 47.29 23 E4a_E6a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I4 Intron 0 4.22 5.86 16.60 9.91 6.53 4.47 3.23 6.85 10.20 4.55 8.99 0.79 0.73 8.07 12.07 8.57 5.12 16.90 11.30 6.13 8.79 2.31 3.91 25 I4_SR1 SilentIntronRegion 0 4.34 6.25 15.35 8.36 6.43 4.04 2.21 5.46 12.45 4.85 8.71 1.31 0.84 9.02 11.94 8.42 3.63 16.23 8.66 8.14 9.26 2.22 5.39 26 I4_AR1 ActiveIntronRegion 0 4.14 5.39 18.93 12.54 6.82 5.25 4.89 9.19 6.92 4.18 9.64 0.00 0.58 6.77 12.52 8.98 7.57 18.31 15.64 3.13 8.25 2.50 1.68 27 E5_Aa NovelBoundary 0 29.19 29.07 34.86 31.13 0.00 5.11 9.63 17.25 19.97 11.28 12.53 0.00 0.00 18.95 0.00 24.95 14.21 72.79 13.55 15.53 12.29 11.70 12.55 28 ER5a ExonRegion 0 21.52 18.17 49.97 39.56 14.89 18.62 18.65 27.41 54.11 24.13 52.06 6.99 20.32 71.82 52.67 45.69 50.66 60.48 22.58 30.91 89.93 18.06 31.32 29 E5_Da NovelBoundary 0 6.74 2.50 19.10 27.54 7.56 0.00 2.25 4.48 10.79 11.47 4.58 0.00 6.33 7.30 13.85 3.25 4.77 26.45 4.14 0.00 8.40 2.69 7.51 30 E5a_E6a KnownJunction 0 30.45 17.89 56.98 67.56 31.41 7.95 11.79 34.95 37.38 32.13 63.02 6.30 0.00 80.52 78.25 49.90 26.93 68.23 19.01 27.80 77.47 22.23 30.90 31 E6_Aa NovelBoundary 0 6.82 15.46 17.33 22.08 0.00 0.00 4.33 22.67 14.12 9.13 5.05 7.65 0.00 22.07 13.35 3.42 22.53 15.79 4.80 6.52 2.78 0.00 7.68 32 ER6a ExonRegion 0 29.56 22.86 50.61 51.75 19.62 25.96 9.00 37.18 51.75 29.33 58.20 9.47 7.74 72.53 62.98 54.72 47.00 41.49 30.17 34.95 77.41 19.09 30.65 33 E6_Da NovelBoundary 0 9.48 6.45 24.27 35.93 7.56 4.71 13.69 3.98 20.89 8.22 9.42 12.60 6.17 9.65 24.35 22.22 13.65 44.19 7.81 2.49 19.58 0.00 12.29 34 E6a_E7a KnownJunction 0 30.23 5.72 47.40 43.15 12.56 20.67 6.76 41.32 58.97 17.89 38.38 11.70 12.50 70.22 62.80 29.22 39.93 45.52 18.26 43.72 79.69 13.96 19.38 35 E6a_E8a KnownJunction 0 3.26 0.00 0.00 0.00 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.48 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 4.18 36 I6 Intron 1 9.84 17.24 13.48 17.49 13.90 13.54 7.60 13.04 12.08 7.47 13.21 4.81 1.58 17.66 16.01 19.10 11.28 25.50 11.76 11.64 11.44 6.84 8.83 37 I6_AR1 ActiveIntronRegion 1 6.32 14.02 12.58 19.13 10.45 10.11 6.69 15.39 16.07 7.07 13.32 4.80 1.77 20.26 17.49 18.44 14.41 26.58 13.17 11.24 13.66 9.09 8.10 38 I6_AR2 ActiveIntronRegion 1 19.37 28.37 19.08 19.48 24.49 23.98 11.52 12.34 8.02 10.40 16.85 6.22 1.68 17.87 17.85 25.91 8.63 30.84 12.50 15.77 10.57 4.54 12.78 39 E7_Aa NovelBoundary 0 15.56 18.15 30.01 44.58 31.92 14.59 14.88 25.06 34.95 21.38 11.69 6.30 13.47 29.20 21.63 4.19 22.35 30.59 25.32 29.59 12.29 3.12 4.10 40 ER7a ExonRegion 0 34.29 35.49 80.35 70.60 27.67 34.15 21.80 49.96 63.46 41.44 69.76 27.14 23.48 84.71 75.14 48.95 42.07 62.91 34.77 52.01 77.34 17.83 39.26 41 E7_Da NovelBoundary 0 10.00 27.10 40.86 46.91 12.39 31.29 5.34 25.92 24.80 11.82 17.85 13.05 0.00 16.60 33.38 25.12 11.87 38.72 17.98 23.71 26.75 0.00 0.00 42 E7a_E8a KnownJunction 0 45.19 22.96 53.55 37.22 19.86 21.98 21.82 33.89 41.38 16.31 67.33 29.56 27.76 68.04 63.17 33.67 27.96 25.00 18.26 43.72 70.12 17.08 3.33 43 I7 Intron 0 14.28 18.71 11.94 16.19 7.66 20.05 8.80 5.79 9.41 4.89 11.46 6.74 11.98 11.61 12.59 12.76 3.71 20.56 11.39 11.53 7.43 3.41 7.21 44 I7_AR1 ActiveIntronRegion 0 9.00 20.38 5.54 13.57 5.69 17.26 6.43 4.69 7.82 4.67 13.50 3.25 8.04 9.28 12.07 18.05 6.01 25.37 9.67 13.56 5.35 4.43 8.93 45 I7_SR1 SilentIntronRegion 0 19.98 19.72 17.99 19.88 8.66 23.92 10.50 6.96 11.57 5.58 10.42 10.13 16.44 13.91 13.72 11.85 2.69 21.76 12.21 11.49 8.49 3.44 6.95 46 I7_AR2 ActiveIntronRegion 0 4.99 10.71 4.10 8.31 8.91 12.03 8.21 4.02 4.88 2.78 10.78 2.10 4.25 8.58 9.70 3.02 2.01 3.55 12.89 6.72 8.71 0.72 3.99 47 E8_Aa NovelBoundary 0 21.49 15.06 32.91 47.68 25.47 25.61 11.92 15.16 19.47 16.92 18.11 30.16 34.25 16.25 8.90 12.99 17.86 17.82 23.91 26.91 17.48 11.82 4.35 48 ER8a ExonRegion 0 51.09 22.08 41.11 29.30 18.17 28.32 13.01 28.71 29.34 16.13 41.92 23.59 21.95 43.20 40.26 30.16 20.26 30.06 21.84 33.40 41.97 17.93 18.42