Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RTN2 Gene 0 18.76 72.20 128.19 80.50 34.77 138.36 38.43 147.87 216.22 152.84 40.92 15.52 5.65 28.94 37.35 23.69 11.57 240.10 123.12 114.79 40.73 30.15 27.15 2 344680 Transcript 0 3.59 40.62 54.80 37.29 13.24 104.91 20.45 75.37 112.64 62.24 6.13 0.00 0.00 7.36 2.23 0.00 0.00 123.80 61.88 50.97 9.02 1.26 0.00 3 245923 Transcript 0 9.35 50.57 52.27 28.05 22.80 44.31 20.87 44.10 45.49 80.46 9.13 2.10 1.15 2.92 7.85 3.01 1.49 53.85 42.02 43.31 4.53 6.04 8.36 4 430715 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1b ExonRegion 0 0.51 6.40 9.60 3.66 2.33 9.02 2.59 11.26 23.28 21.44 2.36 0.00 0.00 0.62 1.42 0.58 0.00 19.19 17.72 17.90 6.12 1.18 0.57 7 E1a_E2a KnownJunction 0 3.19 5.26 42.40 11.79 7.72 26.97 4.50 59.02 103.36 78.46 6.95 0.00 7.30 4.94 4.45 0.00 0.00 79.13 73.70 96.39 29.34 2.69 0.00 8 Ix_SR1 SilentIntronRegion 0 6.94 17.39 15.95 12.56 11.34 28.91 10.01 26.73 39.57 20.28 2.12 0.51 0.25 1.19 1.82 0.58 0.85 40.83 16.01 21.53 2.04 1.75 1.26 9 Ix_AR1 ActiveIntronRegion 0 0.43 18.58 14.79 10.50 12.15 42.40 11.52 22.24 32.88 23.60 0.00 0.00 0.00 2.77 0.00 2.05 0.00 32.74 31.64 14.98 1.04 4.31 2.78 10 E2_Aa NovelBoundary 0 0.00 34.60 28.59 23.41 8.15 72.29 25.31 45.51 61.40 22.11 2.63 0.00 0.00 4.59 0.00 3.67 0.00 52.89 39.62 36.05 18.84 11.88 0.00 11 ER2a ExonRegion 0 7.06 17.40 55.80 30.20 7.67 59.70 21.24 98.33 125.54 114.74 5.93 0.67 0.10 2.60 5.67 0.00 0.00 158.58 102.92 110.21 24.14 9.58 3.72 12 E2a_E3a KnownJunction 0 9.19 40.78 74.66 53.87 16.81 112.61 44.96 154.81 164.15 134.82 10.53 5.70 0.00 4.94 9.64 0.00 0.00 338.22 126.69 117.35 22.67 11.21 11.95 13 ER3a ExonRegion 0 11.42 66.67 125.54 61.07 31.70 163.84 39.22 147.70 253.42 173.45 13.45 2.15 1.60 6.69 3.61 2.02 2.46 356.95 139.19 115.58 19.67 10.17 13.72 14 E3a_E4a KnownJunction 0 38.82 176.68 215.93 128.32 82.26 328.73 130.32 260.78 482.87 300.72 15.11 11.10 0.00 9.71 0.00 4.36 0.00 585.45 352.86 174.81 58.50 35.09 60.61 15 ER4a ExonRegion 0 15.80 95.25 168.71 90.15 46.23 204.13 59.95 195.09 295.86 211.19 16.47 1.61 0.22 10.58 6.34 2.74 3.96 339.15 192.17 170.30 27.39 17.79 20.36 16 E4_Da NovelBoundary 0 10.45 28.94 56.80 34.79 20.46 63.71 31.89 56.15 67.48 33.17 7.37 0.00 0.00 0.00 0.00 0.00 0.00 78.93 32.75 51.07 5.99 8.63 0.00 17 E4a_E5a KnownJunction 0 3.33 30.19 39.77 10.72 23.26 30.83 14.97 33.27 31.39 74.41 4.63 0.00 0.00 0.00 0.00 0.00 0.00 49.62 36.99 35.22 0.00 2.69 8.28 18 E4a_E6a KnownJunction 0 7.19 81.24 109.61 74.58 26.49 209.82 40.89 150.74 225.29 124.48 12.27 0.00 0.00 14.72 4.45 0.00 0.00 247.60 123.77 101.95 18.04 2.51 0.00 19 Ix Intron 0 3.01 23.89 13.20 13.90 15.89 27.70 18.46 21.95 25.19 16.55 2.00 0.00 0.00 0.99 1.85 0.77 0.85 18.63 15.22 20.88 3.13 2.15 3.41 20 Ix_AR1 ActiveIntronRegion 0 0.32 14.54 6.44 12.76 12.35 40.34 29.58 18.39 17.19 7.37 0.86 0.00 0.00 0.00 3.64 0.00 0.00 22.68 8.61 15.66 7.60 2.35 0.94 21 Ix_SR1 SilentIntronRegion 0 3.39 25.30 14.18 14.13 16.46 26.14 17.05 22.54 26.41 17.89 2.16 0.00 0.00 1.13 1.62 0.88 0.97 18.17 16.20 21.71 2.54 2.14 3.77 22 E5_Aa NovelBoundary 0 13.41 39.20 45.50 36.73 36.08 8.63 18.28 45.92 33.28 27.37 0.00 0.00 0.00 4.83 0.00 4.36 0.00 42.53 13.27 23.84 0.00 0.00 3.93 23 ER5a ExonRegion 0 15.37 70.94 64.78 45.38 22.34 57.78 26.77 54.94 59.58 86.50 13.64 4.20 2.30 5.84 15.70 6.02 2.98 58.07 47.06 51.40 9.06 9.38 8.45 24 E5_Ab KnownBoundary 1 43.79 111.69 83.73 32.90 75.13 87.45 50.96 58.86 69.56 97.16 81.28 0.00 0.00 31.96 117.07 41.78 26.55 92.23 42.35 74.53 75.62 32.82 36.54 25 ER5b ExonRegion 1 39.72 65.73 59.63 40.47 43.67 51.61 30.85 40.50 49.29 64.55 90.64 3.48 1.17 74.04 132.06 77.28 39.96 60.32 25.71 39.55 68.67 44.50 73.78 26 E5a_E6a KnownJunction 0 23.49 37.10 58.90 62.96 24.36 30.38 12.01 48.55 33.51 60.95 28.85 12.30 6.66 14.60 23.98 25.72 12.81 64.54 36.14 32.60 28.66 13.72 14.85 27 E6_Aa NovelBoundary 0 3.63 18.48 27.35 35.26 4.33 18.28 7.99 47.24 55.61 20.82 7.32 0.00 0.00 5.30 0.00 7.86 0.00 52.94 31.72 11.70 0.00 0.00 3.84 28 ER6a ExonRegion 0 34.68 138.35 222.92 165.97 58.75 230.26 65.05 255.35 361.56 239.06 94.29 20.86 5.39 52.06 87.11 60.81 27.20 394.99 196.85 221.98 86.92 57.04 49.89 29 E6a_E7a KnownJunction 1 99.50 181.81 307.59 213.26 104.41 371.09 77.73 331.51 419.06 274.07 108.40 6.00 0.00 44.62 92.96 84.93 31.14 561.03 293.75 283.98 83.83 61.23 83.06 30 ER7a ExonRegion 0 49.20 152.61 250.23 169.18 51.80 239.33 72.31 252.96 344.01 234.81 80.79 23.77 8.60 59.67 80.13 48.11 26.05 386.94 160.44 213.78 94.57 65.67 47.07 31 E7a_E8a KnownJunction 0 35.93 121.36 263.33 204.30 109.51 408.91 99.90 344.04 392.99 279.10 99.76 56.27 13.31 95.18 148.46 84.08 12.62 327.32 223.54 226.52 96.81 91.67 61.89 32 I7 Intron 0 1.54 16.30 0.00 0.00 3.90 8.02 5.79 0.00 0.00 0.00 9.86 0.00 2.81 1.95 3.23 4.33 2.40 0.00 9.28 4.65 0.00 0.00 0.00 33 I7_AR1 ActiveIntronRegion 0 1.59 16.78 0.00 0.00 4.01 8.25 5.96 0.00 0.00 0.00 10.15 0.00 2.90 2.01 3.33 4.46 2.43 0.00 9.56 4.79 0.00 0.00 0.00 34 ER8a ExonRegion 0 18.05 77.36 248.14 196.57 75.61 268.99 58.46 325.74 402.33 248.49 95.68 46.94 15.21 77.73 96.61 75.11 18.49 403.47 232.03 210.36 91.96 83.76 69.14 35 E8_Da NovelBoundary 0 0.00 5.59 27.38 14.15 40.15 59.00 8.52 28.79 27.66 11.26 5.00 0.00 14.93 2.24 4.45 4.02 0.00 33.29 23.44 9.27 5.07 0.00 7.94 36 E8a_E9a KnownJunction 0 34.97 90.97 276.90 224.91 94.57 156.90 54.59 336.85 454.54 257.53 107.45 96.78 61.68 66.63 76.27 118.17 17.30 543.29 399.54 232.98 73.52 92.52 113.96 37 E9_Aa NovelBoundary 0 14.52 3.35 26.17 20.11 4.33 18.85 12.37 29.78 48.32 18.80 2.68 0.00 0.00 9.18 0.00 8.12 4.21 35.69 13.46 12.66 3.15 0.00 15.62 38 ER9a ExonRegion 0 23.28 68.06 260.69 207.97 51.01 166.13 34.28 327.63 458.49 298.32 90.93 81.34 50.29 102.73 127.16 125.59 32.03 509.98 313.39 205.34 82.66 118.76 108.16 39 E9a_E10a KnownJunction 0 24.30 78.14 249.67 181.63 59.34 237.48 40.72 339.31 442.33 321.67 130.93 54.92 27.92 106.30 139.69 64.94 46.19 386.80 331.49 226.97 87.54 98.89 116.09 40 ER10a ExonRegion 0 28.12 74.69 241.42 142.59 61.95 181.64 41.02 300.99 434.40 301.11 173.08 68.02 15.66 104.93 99.58 47.81 55.72 292.16 231.67 183.59 107.27 79.49 67.19 41 E10a_E11a KnownJunction 0 28.00 105.64 182.93 114.04 35.91 194.94 32.50 222.01 368.11 237.24 99.66 41.11 6.82 60.80 106.19 35.46 29.45 186.00 100.80 114.09 95.01 49.29 38.33 42 E11_Aa NovelBoundary 0 0.00 5.59 17.39 9.82 4.16 10.33 0.00 11.67 33.97 23.58 0.00 0.00 0.00 4.83 0.00 0.00 4.21 21.22 24.85 10.61 0.00 15.00 4.01 43 ER11a ExonRegion 0 20.27 56.03 91.53 59.42 29.34 99.31 28.58 108.97 148.99 104.35 45.35 28.80 9.96 38.64 47.18 27.45 12.36 120.83 78.59 64.16 41.59 35.26 27.29 44 IG18 Intergenic 0 6.05 16.17 17.41 9.41 14.20 14.69 6.54 20.83 46.86 4.22 0.67 0.68 0.59 1.09 1.08 1.84 0.32 12.44 5.41 12.36 2.94 4.83 10.83 45 IG18_SR6 SilentIntergenicRegion 0 5.91 34.81 14.66 7.79 9.35 26.90 8.79 26.99 22.50 6.57 1.35 1.25 1.35 0.00 0.72 0.00 0.00 21.49 8.90 24.53 0.77 0.73 0.00 46 IG18_SR5 SilentIntergenicRegion 0 4.65 27.85 27.41 16.72 21.95 27.97 12.04 32.11 45.01 7.39 0.85 0.57 0.80 1.64 1.26 2.24 0.14 23.16 10.08 21.99 1.68 5.78 5.70 47 IG18_AR5 ActiveIntergenicRegion 0 21.48 9.53 9.20 2.65 4.52 0.00 5.03 16.75 85.37 0.38 3.51 0.00 0.00 4.70 5.90 19.21 1.81 2.76 0.72 5.70 5.52 29.53 69.28 48 IG18_SR4 SilentIntergenicRegion 0 4.45 4.39 8.03 1.00 6.08 0.69 0.62 10.70 52.59 0.18 0.36 0.33 0.38 0.38 0.58 0.28 0.62 1.15 0.90 2.62 1.47 2.05 5.45 49 IG18_AR4 ActiveIntergenicRegion 0 5.54 0.00 3.35 2.94 2.18 0.00 0.00 2.05 50.22 0.98 0.00 0.00 2.35 0.90 0.00 0.00 0.00 0.00 0.00 0.00 2.81 2.11 22.10 50 IG18_AR3 ActiveIntergenicRegion 0 11.58 0.00 9.99 4.90 9.47 0.00 1.07 8.70 50.98 1.92 0.00 1.72 0.00 0.43 1.04 0.00 0.53 0.00 0.00 0.00 3.90 4.03 19.36 51 IG18_SR2 SilentIntergenicRegion 0 4.81 0.00 2.45 2.11 4.38 0.00 0.00 3.77 19.76 0.94 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 11.75 52 IG18_SR1 SilentIntergenicRegion 0 3.85 0.00 6.61 2.47 11.04 0.00 0.00 5.59 41.04 1.16 0.00 0.75 0.00 0.00 0.00 0.68 0.00 1.30 0.00 0.00 14.18 1.11 21.08